BO22266.complete Sequence
694 bp assembled on 2009-12-07
GenBank Submission: KX797474
> BO22266.complete
GAAGTTATCAGTCGACATGGAATTTTCACTGCTCAACAAGGCGAACTTCG
ACAAGGATTGTTTGTACACCGCGAACTCGGAGTTCTACAACAGCGGCGCC
AATGGAGGAGGACTCTCCGTGGCCAATCACATAAATCACTACAACCTCAT
GATTGACTCCAGTTACAAGCTCTGCGCCAACGAGTCCGCAATCCGGGGTT
CCCTCAACCAGGAGTCGAGCTTATTGTTCTCCAAAATCACCACTGTCTCC
GAGTTTTACCCGGCCACCCATAACATTGGCTCCTACAACACGGACTTCCA
TTTGAAGTCCTATGGAGACGACGGCTTGAGCCTGACCGACAAATCAAAAC
AGAGGCGCATTCGCACCACTTTCACGTCCAACCAGCTGAACGAGCTGGAG
AAGATCTTCCTGGAAACCCACTACCCAGATATCTACACCAGGGAAGAGAT
CGCATCCAAGCTGCACTTGACGGAAGCTCGAGTTCAGGTCTGGTTCCAGA
ACAGAAGAGCCAAGTTTCGCAAGCAGGAGAGGCATGCCATTTACATAATG
AAGGACAAGTCGAGCAAATTGGATGGCCGGAAGAATCCTGTAGCAGGATC
GAAATACCTGGGCCCATCTCTCAAGGGACCCCAGAATGGCCATGGCCGTC
AAATGAAATGCTTATACGATCAAATAGCAAGCTTTCTAGACCAT
BO22266.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:07:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PHDP-RA | 663 | CG11182-PA | 1..660 | 17..676 | 3300 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:07:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PHDP-RA | 942 | CG11182-RA | 129..788 | 17..676 | 3300 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:07:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23884036..23884312 | 293..17 | 1385 | 100 | Minus |
| 2R | 25286936 | 2R | 23883745..23883941 | 489..293 | 985 | 100 | Minus |
| 2R | 25286936 | 2R | 23883290..23883480 | 676..486 | 955 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-27 10:07:50 has no hits.
BO22266.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:38:43 Download gff for
BO22266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHDP-RA | 1..660 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:15:54 Download gff for
BO22266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHDP-RA | 129..788 | 17..678 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:13:50 Download gff for
BO22266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| PHDP-RA | 129..788 | 17..678 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:13:50 Download gff for
BO22266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23884036..23884312 | 17..293 | 100 | | Minus |
| 2R | 23883288..23883478 | 488..678 | 98 | <- | Minus |
| 2R | 23883747..23883940 | 294..487 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:15:54 Download gff for
BO22266.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19770811..19771001 | 488..678 | 98 | <- | Minus |
| arm_2R | 19771270..19771463 | 294..487 | 100 | <- | Minus |
| arm_2R | 19771559..19771835 | 17..293 | 100 | | Minus |
BO22266.pep Sequence
Translation from 16 to 694
> BO22266.pep
MEFSLLNKANFDKDCLYTANSEFYNSGANGGGLSVANHINHYNLMIDSSY
KLCANESAIRGSLNQESSLLFSKITTVSEFYPATHNIGSYNTDFHLKSYG
DDGLSLTDKSKQRRIRTTFTSNQLNELEKIFLETHYPDIYTREEIASKLH
LTEARVQVWFQNRRAKFRKQERHAIYIMKDKSSKLDGRKNPVAGSKYLGP
SLKGPQNGHGRQMKCLYDQIASFLDH
BO22266.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:07:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| PHDP-PA | 220 | CG11182-PA | 1..220 | 1..220 | 1156 | 100 | Plus |
| al-PA | 408 | CG3935-PA | 82..145 | 109..172 | 255 | 75 | Plus |
| CG34340-PF | 587 | CG34340-PF | 19..119 | 73..184 | 250 | 49.1 | Plus |
| CG34340-PE | 587 | CG34340-PE | 19..119 | 73..184 | 250 | 49.1 | Plus |
| otp-PJ | 374 | CG10036-PJ | 47..176 | 27..172 | 241 | 39.7 | Plus |
