BO22275.complete Sequence
1108 bp assembled on 2010-01-06
GenBank Submission: KX799435
> BO22275.complete
GAAGTTATCAGTCGACATGCAGCGACGAGAACGGCAAGCAAGTGGCGGTG
GCCCACAAACGACAACTGCCGGTCCATCCGCTGGTAATGTGGCAAATGCC
ACCACAGCCCTAGCCGGTGGTAAAAGCTCAAGCAATAACATGTATTCCAC
CCGCCAATCTGTAAGCACCACGACCGGTGTACTTATGGTCGGACCAAATT
TTCGTGTCGGTAAAAAAATTGGCTGTGGTAATTTTGGCGAATTGCGTTTA
GGCAAAAACCTTTACAACAATGAACATGTAGCAATAAAAATGGAGCCTAT
GAAGTCAAAGGCTCCGCAACTACACTTAGAGTATAGGTTTTATAAACTAT
TAGGATCACATGCCGATAACGCCCCAGATGGCATACCACGCATTTATCAT
TTGGGCACTTGCGGTGGCCGTTATAATGCCATGGTTTTAGAGTTATTGGG
ATTATCATTAGAAGATCTCTTCAATATTTGCGCCCGTAAATTTTCACTTA
AGACTGTATTGATGATAGCGAAACAACTTCTCCACCGGATCGAATATGTT
CATAGTCGGCACTTAATATATAGGGATGTGAAACCAGAGAACTTTCTCAT
TGGCAGAACGTCAACAAAACGTGAAAAAATTATACATATAATTGATTTCG
GTTTGGCCAAAGAATACATTGATTTAGATACAAATAGGCATATACCATAT
CGGGAGCATAAATCCCTAACTGGAACGGCACGTTATATGTCAATCAACAC
GCACATGGGGCGTGAGCAGTCGCGACGCGATGATCTGGAGGCATTGGGGC
ATATGTTTATGTATTTCTTAAGGGGTTCACTGCCGTGGCAAGGCCTAAAG
GCTGATACACTCAAGGAGAGATATCAAAAAATCGGTGATACGAAACGAGC
AACGCCCATCGAGGTGCTTTGTGATGGACATCCGGAAGAGTTTGCGACAT
ATTTGCGTTATGTACGGCGGTTAGATTTTTTCGAAACTCCCGACTATGAT
TTTCTGCGAAGACTGTTTCAAGACTTATTCGATCGTAAGGGATACACCGA
CGAGGGCGAGTTCGACTGGACAGGGAAGACAATGGAGACAGCAAGCTTTC
TAGACCAT
BO22275.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:18:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-RF | 1077 | CG6963-PF | 1..1074 | 17..1090 | 5355 | 99.9 | Plus |
| gish-RM | 1407 | CG6963-PM | 1..1068 | 17..1084 | 5325 | 99.9 | Plus |
| gish-RL | 1614 | CG6963-PL | 1..1068 | 17..1084 | 5325 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:18:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-RF | 2171 | CG6963-RF | 596..1673 | 13..1090 | 5360 | 99.8 | Plus |
| gish-RM | 5623 | CG6963-RM | 1319..2390 | 13..1084 | 5330 | 99.8 | Plus |
| gish-RL | 2945 | CG6963-RL | 1037..2108 | 13..1084 | 5330 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16296835..16297107 | 644..916 | 1365 | 100 | Plus |
| 3R | 32079331 | 3R | 16289629..16289840 | 41..252 | 1060 | 100 | Plus |
| 3R | 32079331 | 3R | 16297173..16297346 | 912..1085 | 870 | 100 | Plus |
| 3R | 32079331 | 3R | 16293986..16294153 | 362..529 | 825 | 99.4 | Plus |
| 3R | 32079331 | 3R | 16296662..16296776 | 530..644 | 575 | 100 | Plus |
| 3R | 32079331 | 3R | 16292722..16292834 | 250..362 | 565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:18:17 has no hits.
BO22275.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-06 09:26:01 Download gff for
BO22275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RF | 564..1637 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:16:06 Download gff for
BO22275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RF | 600..1673 | 17..1092 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:26:16 Download gff for
BO22275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| gish-RF | 600..1673 | 17..1092 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:26:16 Download gff for
BO22275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16296836..16297104 | 645..913 | 100 | -> | Plus |
| 3R | 16297175..16297351 | 914..1092 | 98 | | Plus |
| 3R | 16275144..16275169 | 17..42 | 100 | -> | Plus |
| 3R | 16289631..16289839 | 43..251 | 100 | -> | Plus |
| 3R | 16292724..16292834 | 252..362 | 100 | -> | Plus |
| 3R | 16293987..16294153 | 363..529 | 99 | -> | Plus |
| 3R | 16296662..16296776 | 530..644 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:16:06 Download gff for
BO22275.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 12100866..12100891 | 17..42 | 100 | -> | Plus |
| arm_3R | 12115353..12115561 | 43..251 | 100 | -> | Plus |
| arm_3R | 12118446..12118556 | 252..362 | 100 | -> | Plus |
| arm_3R | 12119709..12119875 | 363..529 | 99 | -> | Plus |
| arm_3R | 12122384..12122498 | 530..644 | 100 | -> | Plus |
| arm_3R | 12122558..12122826 | 645..913 | 100 | -> | Plus |
| arm_3R | 12122897..12123073 | 914..1092 | 98 | | Plus |
BO22275.pep Sequence
Translation from 16 to 1108
> BO22275.pep
MQRRERQASGGGPQTTTAGPSAGNVANATTALAGGKSSSNNMYSTRQSVS
TTTGVLMVGPNFRVGKKIGCGNFGELRLGKNLYNNEHVAIKMEPMKSKAP
QLHLEYRFYKLLGSHADNAPDGIPRIYHLGTCGGRYNAMVLELLGLSLED
LFNICARKFSLKTVLMIAKQLLHRIEYVHSRHLIYRDVKPENFLIGRTST
KREKIIHIIDFGLAKEYIDLDTNRHIPYREHKSLTGTARYMSINTHMGRE
QSRRDDLEALGHMFMYFLRGSLPWQGLKADTLKERYQKIGDTKRATPIEV
LCDGHPEEFATYLRYVRRLDFFETPDYDFLRRLFQDLFDRKGYTDEGEFD
WTGKTMETASFLDH
BO22275.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:02:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gish-PF | 358 | CG6963-PF | 1..358 | 1..358 | 1894 | 100 | Plus |
| gish-PM | 468 | CG6963-PM | 1..358 | 1..358 | 1889 | 99.7 | Plus |
| gish-PH | 468 | CG6963-PH | 1..358 | 1..358 | 1889 | 99.7 | Plus |
| gish-PD | 468 | CG6963-PD | 1..358 | 1..358 | 1889 | 99.7 | Plus |
| gish-PB | 468 | CG6963-PB | 1..358 | 1..358 | 1889 | 99.7 | Plus |
