BO22285.complete Sequence
2884 bp assembled on 2010-01-08
GenBank Submission: KX797909
> BO22285.complete
GAAGTTATCAGTCGACATGCAGTTGCTCCTTAAATCGATATTCACCTGCG
CACTATTCGTGATCTTTGTGTATGCCACCGCCCAGTCGCTGCTCAAAGTC
CAGGAGACAGAAGCGCGGCAGGCGTACCTTAATGTTACCTCCTCCAGCAG
TAGTAATCTCAGCCAGGACGATGGCCACTTCCTCAGCCGGCGACTAAGGC
AAGTCAGCCATGGCGAGGAGGGCGACGAGGGCGCGCCGTCCCAAATGGAC
GACGAGTTGGAACAGATGACCAAGGTGCATGGAGAAGCACCGGACGCGGA
GGAGCTGCGCGAATGTAGCGAGGGTCTTGTCCTGCCACTCTGGATGCCGC
AACGCAACATTTCGGTGGGTGACCGCCTCGTCCGCGGCTTTGTTTACTTC
GTCCTACTGATCTACCTGTTTGTGGGTGTGTCCATCATTGCGGATCGCTT
CATGGCCGCCATCGAGGCAATCACATCGATTGAACGGGCGGTGGTGGTCA
AGGGACCCAACAACACCAAGCAGGTGATGCACGTGCGCATCTGGAACGAA
ACGGTGGCGAATCTAACGCTAATGGCCCTGGGATCGAGTGCCCCCGAGAT
CCTGCTCTCGGTTATTGAGATTTATGCGAAGGACTTCGAGAGCGGTGACT
TGGGACCTGGCACCATCGTGGGATCAGCTGCCTACAACCTGTTTATGATT
ATCGCCGTATGCATGATCTGGATACCGGCGGGCGAGGTACGAAGGATCCG
GCATCTGCGAGTCTTCTTCGTTACCGCCCTCTTCTCGGTCTTCGCCTATG
TGTGGCTGTGGCTCATCCTATCCGTGTTCACGCCCGGCGTGATCCTGGTC
TGGGAGGCGATCGTGACCTTGCTATTCTTCCCGCTGACCGTGCTGTGGGC
CTACATCGCCGAGCGGCGTCTTCTGGTCTACAAATACATGGACAAGAACT
ACCGGGTCAATAAGCGCGGCACCGTGGTGGCCGGCGAGCACGACCAGGTG
GAGATGGATGCGGAGAAGGGCCCCAAACAACCAATGGTCACATCCGCTCG
CGGAAACGACGCCGAGGCCTTCGACGAGGCCCGTCGCGAGTACATCACTT
TGCTGACGGAGCTACGCCAGAAGTACCCCGACGCCGATCTCGAGCAGCTG
GAGATGATGGCCCAGGAGCAGGTGCTGGCGCGGAGCAGCAAGTCGCGCGC
CTTTTATCGCATCCAGGCCACCCGCAAGATGGTCGGCAGCGGCAACCTGA
TGCGCAAGATCCAGGAACGCGCTCACAGCGATCTCACCGAGGTTAAAGCC
CAGCTGCATGCGGGCGATGACGAGGAGGCGGACGATCCCATCCGAATGTA
CTTCGAGCCGGGTCACTACACCGTCATGGAGAACTGCGGCGAGTTTGAGG
TGCGCGTGGTGCGCCGTGGCGACATCTCCACCTACGCCAGCGTGGAGTAC
GAAACGCAGGACGGCACCGCCTCCGCCGGCACCGATTTCGTCGGACGGAA
GGGACTGCTTAGCTTCCCGCCGGGGGTCGACGAGCAGCGCTTCCGCATCG
AGGTGATCGACGATGACGTATTTGAGGAGGACGAGTGCTTCTACATTCGT
CTCTTCAATCCCTCCGAGGGCGTGAAGCTAGCCGTGCCAATGATCGCCAC
CGTCATGATCCTGGACGACGACCACGCGGGCATTTTTGCCTTCACAGACT
CGGTATTCGAGATCACCGAGTCCGTCGGCCGGTTCGAGCTGAAGGTAATG
CGCTACTCCGGCGCCCGCGGCACCGTCATAGTGCCCTACTGGACAGAGAA
CGACACGGCCACCGAATCCAAGGACTACGAGGGGGCCCGCGGCGAACTTG
TCTTCGAAAACAATGAATCCGAGAAATTCATCGATCTGTTCATCCTGGAG
GAGAGCAGCTACGAGAAGGATGTCAGCTTCAAGGTGCACATCGGAGAACC
TCGATTGGCGCCAGACGATGAATTGGCAGCCAAAATCAAGGAGGTCGAGA
AAAAACCCGTTCAGGATCTGACCGAACTGGATCGCATCCTGCTGCTGAGT
AAGCCGAGAAACGGAGAACTGACCACCGCATATGTGCGCATTCGAGAGAG
CCAGGAATTCAAGGCTACAGTCGACAAGCTGGTGGCAAAAGCGAACGTTT
CTGCCGTCCTTGGCACTTCATCGTGGAAGGAACAGTTCAAAGATGCCCTC
ACCGTTATCCCAGCCGATGAAAGTGAGTTTGATAACGATGATGAGGAGGA
GGAGGTGCCCAGTTGCTTCAGCTACGTGAGCCACTTCGTCTGCCTCTTTT
GGAAGGTTCTCTTTGCATTTGTGCCGCCCACTGACATTTGCGGCGGCTAT
GTTACCTTTGTGGTATCCATATTCGTGATTGGCGTCATCACTGCCATCAT
AGGAGATGCCGCCTCCTATTTCGGCTGCGCCCTCAACATCAAGGACTCGG
TAACGGCCATCCTGTTTGTCGCCCTGGGCACAAGCATACCAGATACATTC
GCCAGCATGATTGCCGCCAAGCATGACGAGGGTGCCGATAATTGCATCGG
CAATGTCACGGGCAGCAATGCGGTCAACGTGTTCCTGGGCATCGGCCTGG
CCTGGACCATCGCCGCCGTCTACCACAGCTCCCATGGCATGACCTTCAAC
GTGGAGCCGGGAACCATTGGATTCGCCGTGGCGCTCTTCTGCGGCGAGGC
CCTGATTGCCATAATGCTCATCATGTTCCGGCGCTGGCACAAGGGCATTG
GCGCCGAGCTGGGCGGTCCGAAAGTATCGAAGTACATCAGCGCAGCGATC
CTGGTATTCCTGTGGGTGTTCTACGTGGTTATATGCATACTGGAAGCCTA
CGACGTCATCCGGGTTGCAAGCTTTCTAGACCAT
BO22285.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:49:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Calx-RC | 2853 | CG5685-PC | 1..2850 | 17..2866 | 14100 | 99.6 | Plus |
| Calx-RB | 2853 | CG5685-PB | 1..2850 | 17..2866 | 14100 | 99.6 | Plus |
| Calx-RA | 2853 | CG5685-PA | 1..2850 | 17..2866 | 14100 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Calx-RC | 4728 | CG5685-RC | 510..3360 | 16..2866 | 14105 | 99.6 | Plus |
| Calx-RB | 3786 | CG5685-RB | 668..3518 | 16..2866 | 14105 | 99.6 | Plus |
| Calx-RA | 6137 | CG5685-RA | 1265..4115 | 16..2866 | 14105 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20992567..20994424 | 16..1873 | 9155 | 99.5 | Plus |
| 3R | 32079331 | 3R | 21012891..21013092 | 2665..2866 | 1010 | 100 | Plus |
| 3R | 32079331 | 3R | 21012490..21012665 | 2489..2664 | 880 | 100 | Plus |
| 3R | 32079331 | 3R | 21012266..21012425 | 2333..2492 | 785 | 99.4 | Plus |
| 3R | 32079331 | 3R | 21011264..21011416 | 1962..2114 | 765 | 100 | Plus |
| 3R | 32079331 | 3R | 21012088..21012210 | 2211..2333 | 615 | 100 | Plus |
| 3R | 32079331 | 3R | 21011923..21012024 | 2112..2213 | 510 | 100 | Plus |
| 3R | 32079331 | 3R | 21008149..21008240 | 1873..1964 | 460 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:49:07 has no hits.
BO22285.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:45 Download gff for
BO22285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Calx-RC | 509..3358 | 17..2868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:03 Download gff for
BO22285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Calx-RA | 1173..4022 | 17..2868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:38 Download gff for
BO22285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Calx-RA | 1266..4115 | 17..2868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:38 Download gff for
BO22285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21012891..21013092 | 2665..2868 | 99 | | Plus |
| 3R | 21012494..21012665 | 2493..2664 | 100 | -> | Plus |
| 3R | 20992568..20994423 | 17..1872 | 99 | -> | Plus |
| 3R | 21008149..21008240 | 1873..1964 | 100 | -> | Plus |
| 3R | 21011267..21011415 | 1965..2113 | 100 | -> | Plus |
| 3R | 21011925..21012024 | 2114..2213 | 100 | -> | Plus |
| 3R | 21012091..21012210 | 2214..2333 | 100 | -> | Plus |
| 3R | 21012267..21012425 | 2334..2492 | 99 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:03 Download gff for
BO22285.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16833871..16833962 | 1873..1964 | 100 | -> | Plus |
| arm_3R | 16836989..16837137 | 1965..2113 | 100 | -> | Plus |
| arm_3R | 16837647..16837746 | 2114..2213 | 100 | -> | Plus |
| arm_3R | 16837813..16837932 | 2214..2333 | 100 | -> | Plus |
| arm_3R | 16837989..16838147 | 2334..2492 | 99 | -> | Plus |
| arm_3R | 16818290..16820145 | 17..1872 | 99 | -> | Plus |
| arm_3R | 16838216..16838387 | 2493..2664 | 100 | -> | Plus |
| arm_3R | 16838613..16838814 | 2665..2868 | 99 | | Plus |
BO22285.pep Sequence
Translation from 16 to 2884
> BO22285.pep
MQLLLKSIFTCALFVIFVYATAQSLLKVQETEARQAYLNVTSSSSSNLSQ
DDGHFLSRRLRQVSHGEEGDEGAPSQMDDELEQMTKVHGEAPDAEELREC
SEGLVLPLWMPQRNISVGDRLVRGFVYFVLLIYLFVGVSIIADRFMAAIE
AITSIERAVVVKGPNNTKQVMHVRIWNETVANLTLMALGSSAPEILLSVI
EIYAKDFESGDLGPGTIVGSAAYNLFMIIAVCMIWIPAGEVRRIRHLRVF
FVTALFSVFAYVWLWLILSVFTPGVILVWEAIVTLLFFPLTVLWAYIAER
RLLVYKYMDKNYRVNKRGTVVAGEHDQVEMDAEKGPKQPMVTSARGNDAE
AFDEARREYITLLTELRQKYPDADLEQLEMMAQEQVLARSSKSRAFYRIQ
ATRKMVGSGNLMRKIQERAHSDLTEVKAQLHAGDDEEADDPIRMYFEPGH
YTVMENCGEFEVRVVRRGDISTYASVEYETQDGTASAGTDFVGRKGLLSF
PPGVDEQRFRIEVIDDDVFEEDECFYIRLFNPSEGVKLAVPMIATVMILD
DDHAGIFAFTDSVFEITESVGRFELKVMRYSGARGTVIVPYWTENDTATE
SKDYEGARGELVFENNESEKFIDLFILEESSYEKDVSFKVHIGEPRLAPD
DELAAKIKEVEKKPVQDLTELDRILLLSKPRNGELTTAYVRIRESQEFKA
TVDKLVAKANVSAVLGTSSWKEQFKDALTVIPADESEFDNDDEEEEVPSC
FSYVSHFVCLFWKVLFAFVPPTDICGGYVTFVVSIFVIGVITAIIGDAAS
YFGCALNIKDSVTAILFVALGTSIPDTFASMIAAKHDEGADNCIGNVTGS
NAVNVFLGIGLAWTIAAVYHSSHGMTFNVEPGTIGFAVALFCGEALIAIM
LIMFRRWHKGIGAELGGPKVSKYISAAILVFLWVFYVVICILEAYDVIRV
ASFLDH
BO22285.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Calx-PC | 950 | CG5685-PC | 1..950 | 1..950 | 4860 | 100 | Plus |
| Calx-PB | 950 | CG5685-PB | 1..950 | 1..950 | 4860 | 100 | Plus |
| Calx-PA | 950 | CG5685-PA | 1..950 | 1..950 | 4860 | 100 | Plus |
| Calx-PH | 955 | CG5685-PH | 1..955 | 1..950 | 4844 | 99.5 | Plus |
| Calx-PE | 963 | CG5685-PE | 1..963 | 1..950 | 4836 | 98.7 | Plus |
