BO22311.complete Sequence
874 bp assembled on 2010-01-06
GenBank Submission: KX799960
> BO22311.complete
GAAGTTATCAGTCGACATGAAAATGGATGTTATTGCTCGGGAACAAATCA
TCTACGGTAGCCTGCAGGGATCAAACAAAAATAAAGATTGGACCAGCAGA
CTGCCACCGCCGTCGGCATACACTCTGGACCTGATGTCCAAGAAGGCCAA
GACGACAACCGGGGGCAGCAGCAATGGCAGCAATGCTACCGCCACATCCA
CAACCACATCCACATCCAGCAGTATTAAGCACAAGCAGCCGGCGGGCAGC
AGCAACAACAATGTTGGCCAAAGTCAGAGCAAGAAGACAAAGCCCAGCGG
CAGCTATAATAGCAATAGCAACTACTACTACTACGCTGCTGACGAGGAGG
AGGGCGGTAGCGCTGACTATGCACTGAGCAACTACGATAAGAAGGCTGTC
GAGGAGCTGTCCCTGCGATTGCTCGACGAACTGAGGGCGGCCAAGTCGCG
TCATTTGACCTGTACGGAAGTGTCGCTACCCTGTGATCTCACGCCGAGCG
TGGCCCGGGAAATAATCCGCGTGTCGGAGAAGGAGCCCCGCGGCATACGC
GGCTGCACCATCTACATTGAGTTCGAGGATGAGCCGAAGAATTCGCGTCG
CATTGCCTCGATCAAGGTCGATTCGGATACGGTGTCCACATTCGAAGTGT
ATCTGACCCTCAGGCAGGATCATCGCGGCTGGACGTCGCTGTTGCCGCAG
TTCATGAAGAGTTTGGCCCGCACGATCACCATCAGTCCGGAGTATACGAT
CACCAAGAATAAGCTATATTCCGCTGATGGTTTGGGTGCACGCAGGAGCT
ATAGCTTCGGCAGCCACGCCCATAGACCCAGTGCGGCCATCGCCACGCCC
ACCAACGCAAGCTTTCTAGACCAT
BO22311.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 13:42:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scyl-RC | 843 | CG7590-PC | 1..840 | 17..856 | 4200 | 100 | Plus |
| scyl-RA | 843 | CG7590-PA | 1..840 | 17..856 | 4200 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 13:42:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scyl-RC | 3124 | CG7590-RC | 585..1424 | 17..856 | 4200 | 100 | Plus |
| scyl-RA | 2195 | CG7590-RA | 585..1424 | 17..856 | 4200 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 13:41:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 11253701..11254472 | 85..856 | 3860 | 100 | Plus |
| 3L | 28110227 | 3L | 11252891..11252960 | 17..86 | 350 | 100 | Plus |
Blast to na_te.dros performed 2014-11-27 13:41:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2472 | 164..334 | 207 | 61 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2448 | 176..334 | 179 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6868 | 181..334 | 143 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6845 | 246..331 | 131 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6809 | 246..322 | 126 | 64.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2314..2409 | 228..325 | 116 | 59.2 | Plus |
BO22311.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-01-06 09:25:59 Download gff for
BO22311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scyl-RA | 583..1422 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 07:53:14 Download gff for
BO22311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scyl-RA | 585..1424 | 17..858 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:24:33 Download gff for
BO22311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| scyl-RA | 585..1424 | 17..858 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:24:33 Download gff for
BO22311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 11252891..11252960 | 17..86 | 100 | -> | Plus |
| 3L | 11253703..11254472 | 87..858 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 07:53:14 Download gff for
BO22311.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 11245991..11246060 | 17..86 | 100 | -> | Plus |
| arm_3L | 11246803..11247572 | 87..858 | 99 | | Plus |
BO22311.pep Sequence
Translation from 16 to 874
> BO22311.pep
MKMDVIAREQIIYGSLQGSNKNKDWTSRLPPPSAYTLDLMSKKAKTTTGG
SSNGSNATATSTTTSTSSSIKHKQPAGSSNNNVGQSQSKKTKPSGSYNSN
SNYYYYAADEEEGGSADYALSNYDKKAVEELSLRLLDELRAAKSRHLTCT
EVSLPCDLTPSVAREIIRVSEKEPRGIRGCTIYIEFEDEPKNSRRIASIK
VDSDTVSTFEVYLTLRQDHRGWTSLLPQFMKSLARTITISPEYTITKNKL
YSADGLGARRSYSFGSHAHRPSAAIATPTNASFLDH
BO22311.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:13:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| scyl-PC | 280 | CG7590-PC | 1..280 | 1..280 | 1434 | 100 | Plus |
| scyl-PA | 280 | CG7590-PA | 1..280 | 1..280 | 1434 | 100 | Plus |
| chrb-PE | 233 | CG7533-PE | 26..233 | 49..254 | 419 | 45.6 | Plus |
| chrb-PC | 299 | CG7533-PC | 92..299 | 49..254 | 419 | 45.6 | Plus |
