BO22315.complete Sequence
1042 bp assembled on 2009-12-07
GenBank Submission: KX797582
> BO22315.complete
GAAGTTATCAGTCGACATGGAGAAGCTAACGAATGTTCAGGCACAGCAGG
AAGAGGAGGAGGAAGAAGGTCCACTCAGCGTGACTAAGTTAATAGGCGGC
AGCATCACGGCCAAGGACATCAAGCTGCTCCAGCAGGCCAGTCTGCACAC
CGTGGAGTCGGTGGCCAATGCCACCAAGAAGCAACTGATGGCCATTCCCG
GCTTGGGCGGCGGCAAGGTGGAGCAGATCATCACGGAGGCTAACAAACTG
GTGCCTCTGGGCTTCCTTAGTGCTCGCACCTTCTATCAAATGCGTGCCGA
TGTCGTGCAGCTGAGCACGGGCTCCAAGGAGCTGGATAAACTGCTGGGCG
GCGGCATTGAGACGGGATCCATTACCGAGATCTTTGGCGAGTTCCGCTGC
GGAAAGACCCAATTGTGCCACACTCTGGCAGTAACCTGCCAGCTGCCCAT
CAGCCAGAAGGGCGGCGAGGGCAAGTGCATGTACATCGACACGGAGAACA
CCTTCCGTCCGGAGCGTTTGGCTGCCATCGCGCAAAGGTACAAACTGAAT
GAATCCGAGGTGCTGGACAATGTGGCCTTCACCCGTGCCCACAACTCAGA
TCAGCAGACCAAGCTCATCCAGATGGCGGCGGGCATGCTCTTTGAGTCCA
GATACGCTTTGCTGATTGTGGACAGTGCCATGGCGCTCTACAGATCCGAT
TATATTGGTCGCGGGGAGCTGGCCGCCAGGCAAAACCATTTGGGCTTATT
TCTGCGCATGCTTCAACGCCTGGCCGATGAGTTCGGAGTGGCTGTGGTAA
TTACTAACCAGGTTACTGCCTCGCTGGACGGCGCACCCGGCATGTTTGAT
GCCAAGAAGCCCATTGGCGGGCACATCATGGCCCACTCCTCAACCACGCG
GCTGTATCTGCGCAAGGGTAAAGGCGAAACCCGCATCTGCAAGATCTACG
ACTCGCCCTGTTTGCCGGAATCGGAGGCCATGTTCGCCATTCTGCCGGAT
GGAATAGGAGACGCCAGGGAGAGCGCAAGCTTTCTAGACCAT
BO22315.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 01:42:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-A-RA | 1011 | CG7948-PA | 1..1008 | 17..1024 | 5040 | 100 | Plus |
| spn-A-RB | 840 | CG7948-PB | 1..837 | 188..1024 | 4185 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 01:42:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-A-RA | 1279 | CG7948-RA | 99..1106 | 17..1024 | 5040 | 100 | Plus |
| spn-A-RB | 1342 | CG7948-RB | 240..1169 | 95..1024 | 4650 | 100 | Plus |
| spn-A-RB | 1342 | CG7948-RB | 99..177 | 17..95 | 395 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 01:42:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30054869..30055798 | 1024..95 | 4650 | 100 | Minus |
| 3R | 32079331 | 3R | 30055861..30055939 | 95..17 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 01:42:47 has no hits.
BO22315.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:38:53 Download gff for
BO22315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 107..1114 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 20:55:31 Download gff for
BO22315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 99..1106 | 17..1026 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:55:04 Download gff for
BO22315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| spn-A-RA | 99..1106 | 17..1026 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 02:55:04 Download gff for
BO22315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30054867..30055798 | 95..1026 | 99 | <- | Minus |
| 3R | 30055862..30055939 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 20:55:31 Download gff for
BO22315.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25880589..25881520 | 95..1026 | 99 | <- | Minus |
| arm_3R | 25881584..25881661 | 17..94 | 100 | | Minus |
BO22315.pep Sequence
Translation from 16 to 1042
> BO22315.pep
MEKLTNVQAQQEEEEEEGPLSVTKLIGGSITAKDIKLLQQASLHTVESVA
NATKKQLMAIPGLGGGKVEQIITEANKLVPLGFLSARTFYQMRADVVQLS
TGSKELDKLLGGGIETGSITEIFGEFRCGKTQLCHTLAVTCQLPISQKGG
EGKCMYIDTENTFRPERLAAIAQRYKLNESEVLDNVAFTRAHNSDQQTKL
IQMAAGMLFESRYALLIVDSAMALYRSDYIGRGELAARQNHLGLFLRMLQ
RLADEFGVAVVITNQVTASLDGAPGMFDAKKPIGGHIMAHSSTTRLYLRK
GKGETRICKIYDSPCLPESEAMFAILPDGIGDARESASFLDH
BO22315.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:08:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| spn-A-PA | 336 | CG7948-PA | 1..336 | 1..336 | 1697 | 100 | Plus |
| spn-A-PB | 279 | CG7948-PB | 1..279 | 58..336 | 1424 | 100 | Plus |
| spn-B-PA | 341 | CG3325-PA | 87..328 | 98..335 | 185 | 30.9 | Plus |
| spn-D-PA | 270 | CG31069-PA | 45..267 | 98..309 | 171 | 27.8 | Plus |
