BO22319.complete Sequence
1162 bp assembled on 2009-12-07
GenBank Submission: KX797498
> BO22319.complete
GAAGTTATCAGTCGACATGGAGGAATTTAATTCGAGCGGATCAGTAGTTA
ATGGTACAGGATCTACGGAAGTTCCTCAATCTAATGCTGAAGTTATAAGG
GGACAAATATTTGAAGTTGGTCCTAGGTATATTAAACTCGCCTATATAGG
TGAAGGAGCTTATGGCATGGTTGTGTCTGCGGATGACACGCTAACAAACC
AAAGAGTTGCAATAAAAAAAATATCGCCCTTTGAACACCAAACTTATTGT
CAAAGGACTCTCAGAGAAATAACCATATTGACCAGATTTAAACATGAAAA
CATTATTGATATTCGAGATATTCTTCGAGTTGATAGCATAGACCAAATGA
GAGATGTTTATATTGTACAGTGTTTGATGGAGACTGATTTGTATAAACTA
CTTAAAACACAGAGGCTAAGTAATGATCACATCTGTTACTTCTTATATCA
GATATTGCGTGGACTCAAGTACATTCATTCCGCAAACGTCTTGCATCGGG
ACCTTAAGCCAAGTAATTTACTGTTGAACAAGACGTGCGACTTAAAAATT
TGCGACTTTGGATTGGCTCGTATTGCAGATCCCGAGCACGATCATACTGG
CTTTCTCACAGAATACGTTGCTACCCGATGGTATAGAGCACCTGAAATAA
TGCTTAACTCAAAAGGATACACCAAATCTATAGACATATGGTCCGTTGGC
TGCATTTTGGCTGAAATGTTAAGTAATCGGCCAATATTTCCTGGAAAACA
TTACCTGGATCAACTTAATCATATTCTTGGAGTATTGGGTTCACCGTCCC
GGGACGATTTAGAGTGTATTATTAATGAAAAGGCACGGAACTATTTGGAA
TCTTTACCATTTAAGCCAAATGTACCCTGGGCGAAACTATTTCCAAATGC
TGATGCGTTGGCTTTAGATCTCCTTGGAAAAATGTTAACATTTAACCCGC
ATAAACGGATTCCTGTCGAGGAAGCTCTTGCACATCCCTATTTAGAGCAA
TATTATGATCCTGGAGATGAGCCTGTCGCTGAAGTGCCATTTCGGATTAA
TATGGAAAATGATGACATTTCTCGAGATGCCCTGAAGTCGTTGATTTTTG
AAGAAACCTTAAAATTTAAGGAACGACAACCAGACAATGCGCCTGCAAGC
TTTCTAGACCAT
BO22319.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 10:15:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rl-RI | 1131 | CG12559-PI | 1..1128 | 17..1144 | 5640 | 100 | Plus |
rl-RC | 1131 | CG12559-PC | 1..1128 | 17..1144 | 5640 | 100 | Plus |
rl-RD | 1131 | CG12559-PD | 1..1128 | 17..1144 | 5640 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 10:15:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rl-RI | 2072 | CG12559-RI | 102..1230 | 16..1144 | 5645 | 100 | Plus |
rl-RC | 1614 | CG12559-RC | 126..1254 | 16..1144 | 5645 | 100 | Plus |
rl-RD | 1795 | CG12559-RD | 307..1435 | 16..1144 | 5645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 10:15:12
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 1113198..1113485 | 548..835 | 1440 | 100 | Plus |
2R | 25286936 | 2R | 1212216..1212504 | 548..835 | 1290 | 97.2 | Plus |
2R | 25286936 | 2R | 1207919..1208207 | 548..835 | 1260 | 96.5 | Plus |
U | 3151297 | U | 1722541..1722804 | 574..835 | 1100 | 96.2 | Plus |
2R | 25286936 | 2R | 1113535..1113725 | 831..1021 | 955 | 100 | Plus |
2R | 25286936 | 2R | 1208257..1208447 | 831..1021 | 955 | 100 | Plus |
U | 3151297 | U | 1722854..1723044 | 831..1021 | 955 | 100 | Plus |
2R | 25286936 | 2R | 1212554..1212744 | 831..1021 | 895 | 97.9 | Plus |
2R | 25286936 | 2R | 1072281..1072441 | 16..176 | 805 | 100 | Plus |
2R | 25286936 | 2R | 1105844..1105981 | 410..547 | 690 | 100 | Plus |
2R | 25286936 | 2R | 1076635..1076761 | 175..301 | 635 | 100 | Plus |
2R | 25286936 | 2R | 1129252..1129376 | 1020..1144 | 625 | 100 | Plus |
2R | 25286936 | 2R | 1133392..1133516 | 1020..1144 | 625 | 100 | Plus |
2R | 25286936 | 2R | 1137600..1137724 | 1020..1144 | 625 | 100 | Plus |
2R | 25286936 | 2R | 1141916..1142040 | 1020..1144 | 625 | 100 | Plus |
2R | 25286936 | 2R | 1146059..1146183 | 1020..1144 | 625 | 100 | Plus |
2R | 25286936 | 2R | 1120623..1120747 | 1020..1144 | 625 | 100 | Plus |
2R | 25286936 | 2R | 1124961..1125085 | 1020..1144 | 625 | 100 | Plus |
U | 3151297 | U | 2631246..2631370 | 1144..1020 | 625 | 100 | Minus |
2R | 25286936 | 2R | 1080331..1080441 | 302..412 | 555 | 100 | Plus |
2R | 25286936 | 2R | 1150145..1150219 | 1020..1094 | 360 | 98.7 | Plus |
Blast to na_te.dros performed on 2014-11-27 10:15:13 has no hits.
BO22319.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2009-12-08 09:38:52 Download gff for
BO22319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rl-RE | 81..1208 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:16:54 Download gff for
BO22319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rl-RE | 86..1213 | 17..1146 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 11:16:59 Download gff for
BO22319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
rl-RD | 308..1435 | 17..1146 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 11:16:59 Download gff for
BO22319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 1113198..1113482 | 548..832 | 100 | -> | Plus |
2R | 1072282..1072439 | 17..174 | 100 | -> | Plus |
2R | 1076635..1076761 | 175..301 | 100 | -> | Plus |
2R | 1080331..1080441 | 302..412 | 100 | -> | Plus |
2R | 1105847..1105981 | 413..547 | 100 | -> | Plus |
2R | 1113537..1113725 | 833..1021 | 100 | -> | Plus |
2R | 1120625..1120747 | 1022..1146 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:16:54 Download gff for
BO22319.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2RHet | 198996..199153 | 17..174 | 100 | -> | Plus |
2RHet | 203349..203475 | 175..301 | 100 | -> | Plus |
2RHet | 207045..207155 | 302..412 | 100 | -> | Plus |
2RHet | 232561..232695 | 413..547 | 100 | -> | Plus |
2RHet | 239912..240196 | 548..832 | 100 | -> | Plus |
2RHet | 240251..240439 | 833..1021 | 100 | -> | Plus |
2RHet | 247339..247461 | 1022..1146 | 98 | | Plus |
BO22319.pep Sequence
Translation from 16 to 1162
> BO22319.pep
MEEFNSSGSVVNGTGSTEVPQSNAEVIRGQIFEVGPRYIKLAYIGEGAYG
MVVSADDTLTNQRVAIKKISPFEHQTYCQRTLREITILTRFKHENIIDIR
DILRVDSIDQMRDVYIVQCLMETDLYKLLKTQRLSNDHICYFLYQILRGL
KYIHSANVLHRDLKPSNLLLNKTCDLKICDFGLARIADPEHDHTGFLTEY
VATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLDQL
NHILGVLGSPSRDDLECIINEKARNYLESLPFKPNVPWAKLFPNADALAL
DLLGKMLTFNPHKRIPVEEALAHPYLEQYYDPGDEPVAEVPFRINMENDD
ISRDALKSLIFEETLKFKERQPDNAPASFLDH
BO22319.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 06:07:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
rl-PI | 376 | CG12559-PI | 1..376 | 1..376 | 1980 | 100 | Plus |
rl-PC | 376 | CG12559-PC | 1..376 | 1..376 | 1980 | 100 | Plus |
rl-PD | 376 | CG12559-PD | 1..376 | 1..376 | 1980 | 100 | Plus |
rl-PE | 376 | CG12559-PE | 1..376 | 1..376 | 1980 | 100 | Plus |
rl-PG | 331 | CG12559-PG | 6..331 | 51..376 | 1713 | 99.1 | Plus |