BO22338.complete Sequence
1774 bp assembled on 2010-01-25
GenBank Submission: KX796188
> BO22338.complete
GAAGTTATCAGTCGACATGCAGCGAAAACTGAGCAACGGATCCCATCATC
CGCACTACAAATATAACGACGAGAGCCCCAAGAAGGAGTCCATGTTTAGT
AGCATCGGTGGGTTTGGCTCTATAGATTTAGATTTAGAAAAAAAAAAAGA
ATACTCTACCAACTCATCACTTGCAGGTCAATCGATTCTACGCAATCTGA
CAACATCGCCCTTCAGCCAAAAGAAACACAATTCAACTGCAACAACAATA
CCACTGCCGCACAACAACCAAACATTGATCACGGATGCAGCAACAGCAGC
AGCAGCGGCGGCAACAGCAACAACACCGCCAAATATTGCAGCTACAGTGC
TCACGACAACGCCAACGACCACGCCCACTTGGCGCCTGCCAACGGAAAAT
TCCCAAGCCTACGACAGCTGTGATAGTAGTAGTAATGCGACCACGACGAC
CTTGAATTTGGGCCTCTCCTCACCCTCCCCCTCGTTGCCGCGCAAGCAAT
TCCCCACAGAATCGCCGACCCTGCAACTCACGAGTCAGCAGCAGCAGCAG
CCACAGCGATTGCAGCCGGGCAATCAGAGCCCCATAGTGCTGCAGCGCTT
CTACCACCAGCAGAATCAGCTGCGCGAGAAGGAGGCGGCTGAGCGGTATC
AGCAGCAGCGCCAGCAGCCGCCCGTTGGAGTGACCAGCACGAATCCGTTT
CACAGCAACTATGTGCCGCCGCCGCCATCAACGCACTCCACCTCTAGTCA
GTCCTCCACGCAGTCGACGTGTTCGCAAATCGCCATCAATCCCGCCAGCA
TATCCCCATCGTCTGGTTCCGGAACGGGAAACATGGCGGGATTGGGAATC
GGTTCGGCTCCGGCATCGGGATTGGGGGCAGCTGGTCACTTTGGAGCGGG
CGGCACTGGCGAGCAGCTGCAGTATCAGCCGCTGCCCATCGCCGCCGAGG
CAACGGGAACGAGTCCCACGCTCCAGTCTAGATCACCGGAACAGCAGTCG
GATTATGGAGGAAACGGCAACATGGTGGCCAGTAAGCTGAGCAAGCTGTA
CGCACGCCGACAACTTTTGGGCCAGAGCTCCAGCAGCGGAGCGAGCAATA
GCAGCCTGGACGGTTGCAGTCGGGAGCAACACGATGCAGGCTGGTTCAAC
ACTCTTGCCGGTGCCATGAAGCGACAGTTTGCCACCTATGTTAAAACCCA
ATTGAATTCCACAGCCACGTCGCCGGTGGCGTCCAGCATGGATCGAGACC
AGGAGCCAGTGCATCCGCAGCCGCCGGCGTACAGGAGCGTTGTGAATAAC
GGCAGCGGTGGCAAGTCTTACTACTATCGCACCTTGTCGGCGGCCAGCAG
CAGTAGCAATACCAGCCAGAGCACCTCGCCCACGACGGAACCGCTGCCCG
GCGGTGGCACCAGTAGCTTTCTGCGTCGCTATGCAAGCAGTGGACCGGGA
GGTAGCATCAGCACGCCGCCCAGTCCGCATATCTTGGCGGGATTGGATCG
CAGGCATCGAAGTCCAGATCCGCCGCCACGCTACAATCGCGGACAGTCAC
CGCTATTGCTGCGCAAGAATCTGCTGGAGCTGAGTGGCCAGCCGCCCGGC
TCTCCGCTGCTGCACCGAAGATACGTTTCGGCTTCGCCGCCGCTGCCGCC
ACCGCGTCGAGGCTCTGAAAGCGTGCCGGGATCACCGCAGCATTTCCGCA
CTCGCATCCACTATACACCCGAGCCCCAGAGACGCATCTACCGTACGATA
GATCAAGCAAGCTTTCTAGACCAT
BO22338.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hep-RA | 3537 | CG4353-PA | 1954..3534 | 176..1756 | 7905 | 100 | Plus |
| hep-RD | 3489 | CG4353-PD | 1954..2917 | 176..1139 | 4820 | 100 | Plus |
| hep-RF | 3462 | CG4353-PF | 1954..2917 | 176..1139 | 4820 | 100 | Plus |
| hep-RD | 3489 | CG4353-PD | 2915..3459 | 1212..1756 | 2725 | 100 | Plus |
| hep-RA | 3537 | CG4353-PA | 1863..1956 | 16..109 | 470 | 100 | Plus |
| hep-RD | 3489 | CG4353-PD | 1863..1956 | 16..109 | 470 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hep-RE | 5689 | CG4353-RE | 3408..4988 | 176..1756 | 7905 | 100 | Plus |
| hep-RA | 4893 | CG4353-RA | 2612..4192 | 176..1756 | 7905 | 100 | Plus |
| hep-RD | 5344 | CG4353-RD | 2612..3575 | 176..1139 | 4820 | 100 | Plus |
| hep-RE | 5689 | CG4353-RE | 3317..3410 | 16..109 | 470 | 100 | Plus |
| hep-RA | 4893 | CG4353-RA | 2521..2614 | 16..109 | 470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13082128..13082699 | 587..16 | 2860 | 100 | Minus |
| X | 23542271 | X | 13081512..13082066 | 1140..586 | 2775 | 100 | Minus |
| X | 23542271 | X | 13080638..13081121 | 1620..1137 | 2420 | 100 | Minus |
| X | 23542271 | X | 13080432..13080569 | 1756..1619 | 690 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 03:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2520 | 234..447 | 231 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2364..2538 | 201..378 | 205 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6840 | 234..346 | 201 | 68.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2415..2886 | 214..668 | 199 | 55.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6743..6893 | 234..378 | 199 | 62.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6845 | 243..372 | 198 | 63.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6721..6924 | 217..419 | 189 | 60.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6733..6821 | 281..369 | 184 | 67.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6785..6920 | 234..369 | 184 | 62.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2430 | 251..378 | 180 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2331..2446 | 234..346 | 178 | 66.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1072..1166 | 239..333 | 178 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1593 | 241..335 | 175 | 67.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2490 | 200..372 | 174 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2879..2983 | 239..346 | 172 | 66.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2342..2526 | 200..378 | 170 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6793..6943 | 200..347 | 169 | 64.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6755..6890 | 536..671 | 166 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6779..6914 | 536..671 | 166 | 59.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1075..1157 | 287..366 | 165 | 68.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6708..6828 | 229..346 | 164 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6797 | 285..366 | 158 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1025..1140 | 219..331 | 158 | 64.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1102..1165 | 281..344 | 158 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6797..6928 | 536..664 | 156 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6865 | 536..670 | 155 | 59.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2889 | 240..360 | 153 | 62.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2740..2874 | 243..372 | 150 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6772..7006 | 200..435 | 150 | 58 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2304..2400 | 285..378 | 144 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1553..1632 | 535..615 | 132 | 65.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 981..1165 | 136..323 | 130 | 57.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2625..2664 | 288..327 | 128 | 80 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3239..3323 | 236..323 | 126 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2321..2472 | 508..668 | 125 | 59.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1574 | 291..347 | 123 | 68.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1127 | 301..369 | 120 | 63.8 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3160..3306 | 235..372 | 120 | 60 | Plus |
| Dyak\TART | 8444 | Dyak\TART TARTYAK 8444bp | 6016..6094 | 239..319 | 120 | 65.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2716..2893 | 201..376 | 119 | 55.8 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1011 | 288..327 | 119 | 77.5 | Plus |
BO22338.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:30 Download gff for
BO22338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hep-RB | 22..1761 | 17..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:27 Download gff for
BO22338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hep-RA | 2522..2611 | 17..106 | 100 | == | Plus |
| hep-RA | 2612..4192 | 176..1758 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:47 Download gff for
BO22338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hep-RA | 2522..2611 | 17..106 | 100 | == | Plus |
| hep-RA | 2612..4192 | 176..1758 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:47 Download gff for
BO22338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13080429..13080567 | 1621..1758 | 98 | <- | Minus |
| X | 13080638..13081118 | 1140..1620 | 100 | <- | Minus |
| X | 13081513..13082064 | 588..1139 | 100 | <- | Minus |
| X | 13082128..13082698 | 17..587 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:27 Download gff for
BO22338.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 12974462..12974600 | 1621..1758 | 98 | <- | Minus |
| arm_X | 12974671..12975151 | 1140..1620 | 100 | <- | Minus |
| arm_X | 12975546..12976097 | 588..1139 | 100 | <- | Minus |
| arm_X | 12976161..12976731 | 17..587 | 100 | | Minus |
BO22338.pep Sequence
Translation from 16 to 1774
> BO22338.pep
MQRKLSNGSHHPHYKYNDESPKKESMFSSIGGFGSIDLDLEKKKEYSTNS
SLAGQSILRNLTTSPFSQKKHNSTATTIPLPHNNQTLITDAATAAAAAAT
ATTPPNIAATVLTTTPTTTPTWRLPTENSQAYDSCDSSSNATTTTLNLGL
SSPSPSLPRKQFPTESPTLQLTSQQQQQPQRLQPGNQSPIVLQRFYHQQN
QLREKEAAERYQQQRQQPPVGVTSTNPFHSNYVPPPPSTHSTSSQSSTQS
TCSQIAINPASISPSSGSGTGNMAGLGIGSAPASGLGAAGHFGAGGTGEQ
LQYQPLPIAAEATGTSPTLQSRSPEQQSDYGGNGNMVASKLSKLYARRQL
LGQSSSSGASNSSLDGCSREQHDAGWFNTLAGAMKRQFATYVKTQLNSTA
TSPVASSMDRDQEPVHPQPPAYRSVVNNGSGGKSYYYRTLSAASSSSNTS
QSTSPTTEPLPGGGTSSFLRRYASSGPGGSISTPPSPHILAGLDRRHRSP
DPPPRYNRGQSPLLLRKNLLELSGQPPGSPLLHRRYVSASPPLPPPRRGS
ESVPGSPQHFRTRIHYTPEPQRRIYRTIDQASFLDH
BO22338.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:56:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hep-PA | 1178 | CG4353-PA | 622..1178 | 1..580 | 2876 | 96 | Plus |
| hep-PD | 1162 | CG4353-PD | 622..1153 | 1..580 | 2708 | 91.7 | Plus |
| hep-PF | 1153 | CG4353-PF | 622..1153 | 1..580 | 2708 | 91.7 | Plus |
| Muc68D-PB | 1514 | CG6004-PB | 307..790 | 6..486 | 166 | 20.3 | Plus |
