Clone BO22341 Report

Search the DGRC for BO22341

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:223
Well:41
Vector:pDNR-Dual
Associated Gene/TranscriptCG9062-RB
Protein status:BO22341.pep: full length peptide match
Sequenced Size:2038

Clone Sequence Records

BO22341.complete Sequence

2038 bp assembled on 2010-01-25

GenBank Submission: KX799320

> BO22341.complete
GAAGTTATCAGTCGACATGTTGACGCACAAAACTTGTCAGGCACGTAAGA
AAATGCAGGTTTCCTTCGTGATACGGGACGCCGAGGAGAAACAGCACCGG
AATGGCGTAAACGCTCTGCAGCTGGATGCCAATAACGGCAAGTTGTACTC
CGCCGGTCGCGACGCCATAATCCGTGTGTGGAATACACGGACGGACTCCA
GCGAGAAGTACATACAATCGATGGAGCACCACAACGACTGGGTCAACGAC
ATAGTACTTTGCTGTAATGGCAGGAACCTTATTAGCGCCAGCTGTGATAC
CACGGTGAAGGTGTGGAACGCCCAGAAAGGCTTCTGCATGTCCACCCTGC
GGACCCATCGCGACTACGTGCAGGCGTTGGCCTACGCCAAGGATCGGGAA
CAGGTGGCCAGCGCTGGACTGGACAAGGCCATCTTCCTGTGGGACGTGAA
CACACTGACCGCGCTCACGGCGAGCAATAACACGGTTACCACCTCTAGTC
TAACCGGGTCCAAGGACTCAATCTACAGCTTGGCCATGAATCCATCGGGC
ACCGTGATTGTGAGCGGGTCCACGGAGAATATACTGCGTATCTGGGATCC
CCGCACCTGTATGCGCAGAATGAAGCTGCGAGGCCATACGGAGAACGTGC
GCTGCTTGGTGGTGTCGCCCGATGGAAACCAGGTGGTGTCTGGCAGTTCC
GACGGCACGATCAAGGTGTGGAACCTGGGCCAACAGCGCTGTGTTCAAAC
CATCCACGTGCACAAGGAGGGCGTGTGGTCGCTGCTGATGAGCGAGAACT
TCCAGTACATCATCTCCGGCAGTCGGGATCGCAACATCATTGTGACCGAG
ATGCGGAACCCTAGTAACAAAACGCTTGTGTGCGAGGAGCAGGCGCCCGT
GCTGAGTCTGGGCTACAACATCGACAAGACTGGGGTGTGGGCCACCACCT
GGAACTCGGACATTCGCTGTTGGAAGCTGCCCATGTACGACAGGTGCACA
CTAAATTCCTCGGGCGGAATGGACGCACAATGGACACAGGGCGGCACTGA
GGTGGCCTGCATAAAAGGTGGAGCCGCCATCAAGGAGTGCGCGGTGCTGA
ACGACAAACGTTATATCATAACCAAGGACTCACAAGATCAGGTCGTGGTG
TACGATGTGCTGAGAGTTGTCAAAAAAGAGCAATTGGGCGCTGTTGATTT
CGAAGCGGAGGTGAAGAAGCGTAATAAGCAGGTCTACATTCCAAACTGGT
TCACTGTTGATCTGAAAACCGGGATGCCAACGATTGTATTGGGTCAGGAG
GAAGTGGATTGCTTTTCCGCTTGGGTTTCCATTGAAGCTGGACTGCCGGA
GTGCGTCGATCCCACAACAGAGATTAAGATCAACTATGGCAAATTACTTT
TAGAAGCCCTGCTAGAGTACTGGACACCACCGCATAGCATACCACCAAAC
GAAATGGAACCCGATATGCACGGCAATGGCTACTTCCAAGTGCCCAAGCA
CACGCCCGTCATCTTTAGTGAAGTGGGTGGCCGCACTGTTTGCCGACTTT
TGGTACGCGACGCAGCTGGCGATAGCGAAAGTACCCTGCTCCACGAAACG
GCGCCTCAGTGGGTGACCGACGTGGTGATCGAGAAGAACATTCCCAAGTT
CCTCAAAATACCGTTCTTCCTGCAGCCTCACCCGCAAATGACCAAGCCTG
AACGAACGAAGAAGGATCGTCTTGTGGCTAATGAATTTATTCAGTGTCGC
AAGGTCTGCGAGCACGTGCTTGAAAAGGTGCTGAATGCGGAAACTACCCC
AAGTGGGGGCAATGCTAACAATTCACTGCAGAATAGCCAGAGCGATGCTA
ATTCGGAGGGATCCCAACTGCCAGCTGAGGAACGAATTGAACTGTGGTGT
AACGATGTGGTTGTGGACCCCAACATGGACCTGCGCACGGTGCGCCACTT
TATCTGGAAGCAGTCGACCGATCTAACGTTTCAGTACAAGACCAAACAGA
ATTTCAACTACGATGGTAAAGCAAGCTTTCTAGACCAT

BO22341.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG9062-RB 2007 CG9062-PB 1..2004 17..2020 10020 100 Plus
CG9062-RC 2043 CG9062-PC 1..2001 17..2017 10005 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG9062-RB 3035 CG9062-RB 243..2250 13..2020 10040 100 Plus
CG9062-RC 2849 CG9062-RC 180..2184 13..2017 10025 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:48
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11282329..11283323 1273..279 4975 100 Minus
2R 25286936 2R 11283386..11283608 278..56 1115 100 Minus
2R 25286936 2R 11281436..11281634 1911..1713 995 100 Minus
2R 25286936 2R 11281694..11281892 1715..1517 995 100 Minus
2R 25286936 2R 11281960..11282101 1518..1377 710 100 Minus
2R 25286936 2R 11281269..11281380 2020..1909 560 100 Minus
2R 25286936 2R 11282164..11282269 1378..1273 530 100 Minus
2R 25286936 2R 11283682..11283729 60..13 240 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:08:49 has no hits.

BO22341.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:33 Download gff for BO22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG9062-RB 237..2235 22..2022 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:33 Download gff for BO22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG9062-RB 252..2250 22..2022 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:53 Download gff for BO22341.complete
Subject Subject Range Query Range Percent Splice Strand
CG9062-RB 252..2250 22..2022 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:53 Download gff for BO22341.complete
Subject Subject Range Query Range Percent Splice Strand
2R 11281438..11281632 1715..1909 100 <- Minus
2R 11281695..11281890 1519..1714 100 <- Minus
2R 11281960..11282099 1379..1518 100 <- Minus
2R 11282164..11282268 1274..1378 100 <- Minus
2R 11281267..11281379 1910..2022 98 <- Minus
2R 11282329..11283323 279..1273 100 <- Minus
2R 11283386..11283605 59..278 100 <- Minus
2R 11283684..11283720 22..58 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:33 Download gff for BO22341.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7168772..7168884 1910..2022 98 <- Minus
arm_2R 7168943..7169137 1715..1909 100 <- Minus
arm_2R 7169200..7169395 1519..1714 100 <- Minus
arm_2R 7169465..7169604 1379..1518 100 <- Minus
arm_2R 7169669..7169773 1274..1378 100 <- Minus
arm_2R 7169834..7170828 279..1273 100 <- Minus
arm_2R 7170891..7171110 59..278 100 <- Minus
arm_2R 7171189..7171225 22..58 100   Minus

BO22341.pep Sequence

Translation from 16 to 2038

> BO22341.pep
MLTHKTCQARKKMQVSFVIRDAEEKQHRNGVNALQLDANNGKLYSAGRDA
IIRVWNTRTDSSEKYIQSMEHHNDWVNDIVLCCNGRNLISASCDTTVKVW
NAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTAL
TASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMR
RMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCVQTIHVHK
EGVWSLLMSENFQYIISGSRDRNIIVTEMRNPSNKTLVCEEQAPVLSLGY
NIDKTGVWATTWNSDIRCWKLPMYDRCTLNSSGGMDAQWTQGGTEVACIK
GGAAIKECAVLNDKRYIITKDSQDQVVVYDVLRVVKKEQLGAVDFEAEVK
KRNKQVYIPNWFTVDLKTGMPTIVLGQEEVDCFSAWVSIEAGLPECVDPT
TEIKINYGKLLLEALLEYWTPPHSIPPNEMEPDMHGNGYFQVPKHTPVIF
SEVGGRTVCRLLVRDAAGDSESTLLHETAPQWVTDVVIEKNIPKFLKIPF
FLQPHPQMTKPERTKKDRLVANEFIQCRKVCEHVLEKVLNAETTPSGGNA
NNSLQNSQSDANSEGSQLPAEERIELWCNDVVVDPNMDLRTVRHFIWKQS
TDLTFQYKTKQNFNYDGKASFLDH

BO22341.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:56:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG9062-PB 668 CG9062-PB 1..668 1..668 3556 100 Plus
CG9062-PC 680 CG9062-PC 1..667 1..667 3551 100 Plus
Lis-1-PG 411 CG8440-PG 107..411 27..280 307 27.9 Plus
Lis-1-PF 411 CG8440-PF 107..411 27..280 307 27.9 Plus
Lis-1-PB 411 CG8440-PB 107..411 27..280 307 27.9 Plus
Lis-1-PG 411 CG8440-PG 103..222 161..279 185 35 Plus
Lis-1-PF 411 CG8440-PF 103..222 161..279 185 35 Plus