BO22341.complete Sequence
2038 bp assembled on 2010-01-25
GenBank Submission: KX799320
> BO22341.complete
GAAGTTATCAGTCGACATGTTGACGCACAAAACTTGTCAGGCACGTAAGA
AAATGCAGGTTTCCTTCGTGATACGGGACGCCGAGGAGAAACAGCACCGG
AATGGCGTAAACGCTCTGCAGCTGGATGCCAATAACGGCAAGTTGTACTC
CGCCGGTCGCGACGCCATAATCCGTGTGTGGAATACACGGACGGACTCCA
GCGAGAAGTACATACAATCGATGGAGCACCACAACGACTGGGTCAACGAC
ATAGTACTTTGCTGTAATGGCAGGAACCTTATTAGCGCCAGCTGTGATAC
CACGGTGAAGGTGTGGAACGCCCAGAAAGGCTTCTGCATGTCCACCCTGC
GGACCCATCGCGACTACGTGCAGGCGTTGGCCTACGCCAAGGATCGGGAA
CAGGTGGCCAGCGCTGGACTGGACAAGGCCATCTTCCTGTGGGACGTGAA
CACACTGACCGCGCTCACGGCGAGCAATAACACGGTTACCACCTCTAGTC
TAACCGGGTCCAAGGACTCAATCTACAGCTTGGCCATGAATCCATCGGGC
ACCGTGATTGTGAGCGGGTCCACGGAGAATATACTGCGTATCTGGGATCC
CCGCACCTGTATGCGCAGAATGAAGCTGCGAGGCCATACGGAGAACGTGC
GCTGCTTGGTGGTGTCGCCCGATGGAAACCAGGTGGTGTCTGGCAGTTCC
GACGGCACGATCAAGGTGTGGAACCTGGGCCAACAGCGCTGTGTTCAAAC
CATCCACGTGCACAAGGAGGGCGTGTGGTCGCTGCTGATGAGCGAGAACT
TCCAGTACATCATCTCCGGCAGTCGGGATCGCAACATCATTGTGACCGAG
ATGCGGAACCCTAGTAACAAAACGCTTGTGTGCGAGGAGCAGGCGCCCGT
GCTGAGTCTGGGCTACAACATCGACAAGACTGGGGTGTGGGCCACCACCT
GGAACTCGGACATTCGCTGTTGGAAGCTGCCCATGTACGACAGGTGCACA
CTAAATTCCTCGGGCGGAATGGACGCACAATGGACACAGGGCGGCACTGA
GGTGGCCTGCATAAAAGGTGGAGCCGCCATCAAGGAGTGCGCGGTGCTGA
ACGACAAACGTTATATCATAACCAAGGACTCACAAGATCAGGTCGTGGTG
TACGATGTGCTGAGAGTTGTCAAAAAAGAGCAATTGGGCGCTGTTGATTT
CGAAGCGGAGGTGAAGAAGCGTAATAAGCAGGTCTACATTCCAAACTGGT
TCACTGTTGATCTGAAAACCGGGATGCCAACGATTGTATTGGGTCAGGAG
GAAGTGGATTGCTTTTCCGCTTGGGTTTCCATTGAAGCTGGACTGCCGGA
GTGCGTCGATCCCACAACAGAGATTAAGATCAACTATGGCAAATTACTTT
TAGAAGCCCTGCTAGAGTACTGGACACCACCGCATAGCATACCACCAAAC
GAAATGGAACCCGATATGCACGGCAATGGCTACTTCCAAGTGCCCAAGCA
CACGCCCGTCATCTTTAGTGAAGTGGGTGGCCGCACTGTTTGCCGACTTT
TGGTACGCGACGCAGCTGGCGATAGCGAAAGTACCCTGCTCCACGAAACG
GCGCCTCAGTGGGTGACCGACGTGGTGATCGAGAAGAACATTCCCAAGTT
CCTCAAAATACCGTTCTTCCTGCAGCCTCACCCGCAAATGACCAAGCCTG
AACGAACGAAGAAGGATCGTCTTGTGGCTAATGAATTTATTCAGTGTCGC
AAGGTCTGCGAGCACGTGCTTGAAAAGGTGCTGAATGCGGAAACTACCCC
AAGTGGGGGCAATGCTAACAATTCACTGCAGAATAGCCAGAGCGATGCTA
ATTCGGAGGGATCCCAACTGCCAGCTGAGGAACGAATTGAACTGTGGTGT
AACGATGTGGTTGTGGACCCCAACATGGACCTGCGCACGGTGCGCCACTT
TATCTGGAAGCAGTCGACCGATCTAACGTTTCAGTACAAGACCAAACAGA
ATTTCAACTACGATGGTAAAGCAAGCTTTCTAGACCAT
BO22341.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:08:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9062-RB | 2007 | CG9062-PB | 1..2004 | 17..2020 | 10020 | 100 | Plus |
CG9062-RC | 2043 | CG9062-PC | 1..2001 | 17..2017 | 10005 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:08:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9062-RB | 3035 | CG9062-RB | 243..2250 | 13..2020 | 10040 | 100 | Plus |
CG9062-RC | 2849 | CG9062-RC | 180..2184 | 13..2017 | 10025 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:08:48
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11282329..11283323 | 1273..279 | 4975 | 100 | Minus |
2R | 25286936 | 2R | 11283386..11283608 | 278..56 | 1115 | 100 | Minus |
2R | 25286936 | 2R | 11281436..11281634 | 1911..1713 | 995 | 100 | Minus |
2R | 25286936 | 2R | 11281694..11281892 | 1715..1517 | 995 | 100 | Minus |
2R | 25286936 | 2R | 11281960..11282101 | 1518..1377 | 710 | 100 | Minus |
2R | 25286936 | 2R | 11281269..11281380 | 2020..1909 | 560 | 100 | Minus |
2R | 25286936 | 2R | 11282164..11282269 | 1378..1273 | 530 | 100 | Minus |
2R | 25286936 | 2R | 11283682..11283729 | 60..13 | 240 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:08:49 has no hits.
BO22341.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:33 Download gff for
BO22341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9062-RB | 237..2235 | 22..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:36:33 Download gff for
BO22341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9062-RB | 252..2250 | 22..2022 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:53 Download gff for
BO22341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9062-RB | 252..2250 | 22..2022 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:53 Download gff for
BO22341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11281438..11281632 | 1715..1909 | 100 | <- | Minus |
2R | 11281695..11281890 | 1519..1714 | 100 | <- | Minus |
2R | 11281960..11282099 | 1379..1518 | 100 | <- | Minus |
2R | 11282164..11282268 | 1274..1378 | 100 | <- | Minus |
2R | 11281267..11281379 | 1910..2022 | 98 | <- | Minus |
2R | 11282329..11283323 | 279..1273 | 100 | <- | Minus |
2R | 11283386..11283605 | 59..278 | 100 | <- | Minus |
2R | 11283684..11283720 | 22..58 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:36:33 Download gff for
BO22341.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7168772..7168884 | 1910..2022 | 98 | <- | Minus |
arm_2R | 7168943..7169137 | 1715..1909 | 100 | <- | Minus |
arm_2R | 7169200..7169395 | 1519..1714 | 100 | <- | Minus |
arm_2R | 7169465..7169604 | 1379..1518 | 100 | <- | Minus |
arm_2R | 7169669..7169773 | 1274..1378 | 100 | <- | Minus |
arm_2R | 7169834..7170828 | 279..1273 | 100 | <- | Minus |
arm_2R | 7170891..7171110 | 59..278 | 100 | <- | Minus |
arm_2R | 7171189..7171225 | 22..58 | 100 | | Minus |
BO22341.pep Sequence
Translation from 16 to 2038
> BO22341.pep
MLTHKTCQARKKMQVSFVIRDAEEKQHRNGVNALQLDANNGKLYSAGRDA
IIRVWNTRTDSSEKYIQSMEHHNDWVNDIVLCCNGRNLISASCDTTVKVW
NAQKGFCMSTLRTHRDYVQALAYAKDREQVASAGLDKAIFLWDVNTLTAL
TASNNTVTTSSLTGSKDSIYSLAMNPSGTVIVSGSTENILRIWDPRTCMR
RMKLRGHTENVRCLVVSPDGNQVVSGSSDGTIKVWNLGQQRCVQTIHVHK
EGVWSLLMSENFQYIISGSRDRNIIVTEMRNPSNKTLVCEEQAPVLSLGY
NIDKTGVWATTWNSDIRCWKLPMYDRCTLNSSGGMDAQWTQGGTEVACIK
GGAAIKECAVLNDKRYIITKDSQDQVVVYDVLRVVKKEQLGAVDFEAEVK
KRNKQVYIPNWFTVDLKTGMPTIVLGQEEVDCFSAWVSIEAGLPECVDPT
TEIKINYGKLLLEALLEYWTPPHSIPPNEMEPDMHGNGYFQVPKHTPVIF
SEVGGRTVCRLLVRDAAGDSESTLLHETAPQWVTDVVIEKNIPKFLKIPF
FLQPHPQMTKPERTKKDRLVANEFIQCRKVCEHVLEKVLNAETTPSGGNA
NNSLQNSQSDANSEGSQLPAEERIELWCNDVVVDPNMDLRTVRHFIWKQS
TDLTFQYKTKQNFNYDGKASFLDH
BO22341.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:56:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9062-PB | 668 | CG9062-PB | 1..668 | 1..668 | 3556 | 100 | Plus |
CG9062-PC | 680 | CG9062-PC | 1..667 | 1..667 | 3551 | 100 | Plus |
Lis-1-PG | 411 | CG8440-PG | 107..411 | 27..280 | 307 | 27.9 | Plus |
Lis-1-PF | 411 | CG8440-PF | 107..411 | 27..280 | 307 | 27.9 | Plus |
Lis-1-PB | 411 | CG8440-PB | 107..411 | 27..280 | 307 | 27.9 | Plus |
Lis-1-PG | 411 | CG8440-PG | 103..222 | 161..279 | 185 | 35 | Plus |
Lis-1-PF | 411 | CG8440-PF | 103..222 | 161..279 | 185 | 35 | Plus |