Clone BO22343 Report

Search the DGRC for BO22343

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:223
Well:43
Vector:pDNR-Dual
Associated Gene/Transcriptpnt-RB
Protein status:BO22343.pep: Imported from assembly
Sequenced Size:2188

Clone Sequence Records

BO22343.complete Sequence

2188 bp assembled on 2010-01-08

GenBank Submission: KX793983

> BO22343.complete
GAAGTTATCAGTCGACATGGAATTGGCGATTTGTAAAACAGATCTGTCTG
CCACGAAATTTATGCTGCCGCCCGCTTTGCCCTCCTCAGCGGCCATTGGT
TCCTCGTCGGCGGTCGCCTCCACGGCCTCGCATTTCCTGGATAAGGCGGC
CCACGAGCTCTTTCAACTGAACGCCATCAACGGACACCTGTTCAAGTCGC
CGGCCAGCAGCCACCTCAATTCGGTCGGCAGTCCGTCGATACTTAGCCAA
TTGAACGGCATCGGCAACAGCGGCAACCATTCGGGCCAAGTTAGCACCAT
GAGGCTCAAGAAGAACCGCAAAGTCACCTTTCTGTCCAGCCTAGTTGAGT
CGAAAAATATTTTCATCAAGGAGGAGCCGATCCATGGATGCAAGGATCTG
TGCAGTTTGTCGGATATTTCAGATCATGAGGCATCATTAGAAGTTCCCAC
CGCCTTGCCACCCCTCACGCCGGGCACCAATCGCAAGGTCAACGAGGTAC
TGAAGGCATCCTTTGCCTCCTGGGAAAAGGAGGTCCAAAAATGCAACATA
ACCAAAGATCCGCGTGAATGGACGGAGGAGCATGTCATCTACTGGCTCAA
TTGGGCTAAAAATGAGTTCTCATTGGTCTCCATGAACCTGGACCCCTTCT
ACAAGATGAAGGGACGCGCCATGGTGGATCTGGGCAAGGAGAAGTTCCTG
GCCATCACGCCGCCCTTCACCGGCGACATACTGTGGGAGCACTTGGACAT
CCTGCAAAAAGATTGCGAGAAACCAAATGAGGATATTGTGCACGGCAATT
CCTTTGAGTCGGCCACCACGGCCTCGGTCTGTGGATCGGACCACCAGGTG
GCCAATTACCCCAACGAGACGCACGCCAACAGCAACAACAGCAGCATAAA
CAGCCGCCTGTCCATGGATTATGTGACGTCGGCGGGGAATAGTGATAATA
AAAACTTCCACCGCGCCACGCCCCACTCCCACAATGGCTACAACACCAGC
AACACACACGACCGCATCAACAACAGCACGCCCCCGCAGCAGCAGCAATC
GCAGCAGCCGACTGTCAATGGCAGCGGTAGCGCCAGCAGCAACAACAATA
ACTCCATGCTACCGCCCGCTGTACAGCAAAGCAACAACGAAAATAACAAC
ACCAGCAGCAGCAACACAAACAACAGCAGCAACAACAACAACAACAGCGG
TGGCAGCAACAATTCGAATGCGGGCAGCAATAACAACAATAATAACAACA
ATAATATTAACTTTATGGCAGCGGCGGCGATCTTCCAACATCACCTCAAA
GAGGAGCCGGGCACCCAGAATGGTAATATCGGTGGCTATGGTGGTGGCAG
TAATAGCCAGAACGATCCCACGGATCTCAGTAGTTATGGATTGCCCGCCC
ACCTGGCCGCTTACGGTGGTGGGAGTGGCAGTGGGCCAACCGGCGGCAGG
AGCTCCGGTGGCGGTGGCGATGAAAGCGATTATCACAGCACGATCTCGGC
GCAGGATCACCAGAGTCAGCAATCGAGTGGAGGAAATGGCAGTGGAGGAG
CCAGCGGTGGAAGCACCGGAAACAGCAACGGTTACTTGGACAGCAGCTCG
GAGTTCTATGGCAGTTACGCGGGCAGGAATCGATTCCACGATGGTTATCC
ACCGGAATTTACGCCCTATGATGCTCAATCCTTCCAGTCGATGGGCCCCC
AGCCCACGGCCATGGATCAGTGGGGAGCAGCCCATGCCCACCAGCATCCG
GCAGCGTATATGAGCACCTTGGGTCTGGATAAGGGCCTGCTGGGTGGCTA
TACGACGCAGGGCGGAGTGCCGTGCTTCACGGGATCGGGTCCCATTCAAC
TGTGGCAATTCCTGCTCGAATTGCTGCTGGACAAGACGTGTCAGAGTTTC
ATTTCGTGGACCGGCGATGGCTGGGAGTTCAAGCTAACAGATCCTGATGA
GGTGGCTCGTCGTTGGGGAATTCGCAAAAACAAACCGAAGATGAACTACG
AGAAGCTGAGTCGCGGTCTGCGCTACTATTATGACAAAAACATCATCCAC
AAGACGGCAGGCAAACGATATGTCTACCGCTTTGTCTGTGATCTCCAGAA
TCTAGTTGGGCACACACCCGAGGAGCTGGTGGCCAAGTATGATCTTAAGA
TTGAGAAAAAAGATGTGGATGCAAGCTTTCTAGACCAT

BO22343.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:48:52
Subject Length Description Subject Range Query Range Score Percent Strand
pnt-RB 2157 CG17077-PB 1..2154 17..2170 10770 100 Plus
pnt-RD 1911 CG17077-PD 177..1908 439..2170 8660 100 Plus
pnt-RE 1878 CG17077-PE 691..1875 986..2170 5925 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:54
Subject Length Description Subject Range Query Range Score Percent Strand
pnt-RB 4074 CG17077-RB 784..2937 17..2170 10770 100 Plus
pnt-RD 2805 CG17077-RD 650..2381 439..2170 8660 100 Plus
pnt-RE 3715 CG17077-RE 1394..2578 986..2170 5925 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:48
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 23291715..23292682 1953..986 4840 100 Minus
3R 32079331 3R 23340182..23340514 349..17 1665 100 Minus
3R 32079331 3R 23311981..23312208 987..760 1140 100 Minus
3R 32079331 3R 23312887..23313092 761..556 1030 100 Minus
3R 32079331 3R 23291495..23291660 2110..1945 815 99.4 Minus
3R 32079331 3R 23313442..23313560 557..439 595 100 Minus
3R 32079331 3R 23337896..23337988 440..348 465 100 Minus
3R 32079331 3R 23291368..23291429 2170..2109 310 100 Minus
Blast to na_te.dros performed 2014-11-28 02:48:51
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2319..2543 988..1215 377 65.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2292..2532 1051..1295 367 64.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2307..2545 1021..1262 362 65.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2316..2668 859..1214 332 59.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6535..6920 873..1261 324 58.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6717..6923 989..1189 317 66.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6912 1020..1211 311 65.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2340..2666 862..1191 308 58.5 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2769..3034 973..1232 304 63.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2718..2973 992..1252 300 60.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2320..2543 947..1167 292 61.9 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6728..7005 979..1256 291 59 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6921 1038..1250 283 62.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6766..7112 858..1210 250 56.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..7028 947..1198 201 59.1 Plus
roo 9092 roo DM_ROO 9092bp 1045..1178 1065..1196 187 64 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 22..56 1226..1260 121 82.9 Plus
mdg1 7480 mdg1 DMRTMGD1 7480bp Derived from X59545 (g8507) (Rel. 49, Last updated, Version 4). 7060..7094 1226..1260 121 82.9 Plus

BO22343.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:39 Download gff for BO22343.complete
Subject Subject Range Query Range Percent Splice Strand
pnt-RB 779..2932 17..2172 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:58 Download gff for BO22343.complete
Subject Subject Range Query Range Percent Splice Strand
pnt-RB 784..2937 17..2172 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:32 Download gff for BO22343.complete
Subject Subject Range Query Range Percent Splice Strand
pnt-RB 784..2937 17..2172 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:32 Download gff for BO22343.complete
Subject Subject Range Query Range Percent Splice Strand
3R 23291364..23291428 2110..2172 96 <- Minus
3R 23291496..23291653 1952..2109 100 <- Minus
3R 23291717..23292681 987..1951 100 <- Minus
3R 23311982..23312206 762..986 100 <- Minus
3R 23312887..23313090 558..761 100 <- Minus
3R 23313442..23313558 441..557 100 <- Minus
3R 23337896..23337986 350..440 100 <- Minus
3R 23340182..23340514 17..349 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:58 Download gff for BO22343.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 19117086..19117150 2110..2172 96 <- Minus
arm_3R 19117218..19117375 1952..2109 100 <- Minus
arm_3R 19117439..19118403 987..1951 100 <- Minus
arm_3R 19137704..19137928 762..986 100 <- Minus
arm_3R 19138609..19138812 558..761 100 <- Minus
arm_3R 19139164..19139280 441..557 100 <- Minus
arm_3R 19163618..19163708 350..440 100 <- Minus
arm_3R 19165904..19166236 17..349 100   Minus

BO22343.pep Sequence

Translation from 16 to 2188

> BO22343.pep
MELAICKTDLSATKFMLPPALPSSAAIGSSSAVASTASHFLDKAAHELFQ
LNAINGHLFKSPASSHLNSVGSPSILSQLNGIGNSGNHSGQVSTMRLKKN
RKVTFLSSLVESKNIFIKEEPIHGCKDLCSLSDISDHEASLEVPTALPPL
TPGTNRKVNEVLKASFASWEKEVQKCNITKDPREWTEEHVIYWLNWAKNE
FSLVSMNLDPFYKMKGRAMVDLGKEKFLAITPPFTGDILWEHLDILQKDC
EKPNEDIVHGNSFESATTASVCGSDHQVANYPNETHANSNNSSINSRLSM
DYVTSAGNSDNKNFHRATPHSHNGYNTSNTHDRINNSTPPQQQQSQQPTV
NGSGSASSNNNNSMLPPAVQQSNNENNNTSSSNTNNSSNNNNNSGGSNNS
NAGSNNNNNNNNNINFMAAAAIFQHHLKEEPGTQNGNIGGYGGGSNSQND
PTDLSSYGLPAHLAAYGGGSGSGPTGGRSSGGGGDESDYHSTISAQDHQS
QQSSGGNGSGGASGGSTGNSNGYLDSSSEFYGSYAGRNRFHDGYPPEFTP
YDAQSFQSMGPQPTAMDQWGAAHAHQHPAAYMSTLGLDKGLLGGYTTQGG
VPCFTGSGPIQLWQFLLELLLDKTCQSFISWTGDGWEFKLTDPDEVARRW
GIRKNKPKMNYEKLSRGLRYYYDKNIIHKTAGKRYVYRFVCDLQNLVGHT
PEELVAKYDLKIEKKDVDASFLDH

BO22343.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:52
Subject Length Description Subject Range Query Range Score Percent Strand
pnt-PB 718 CG17077-PB 1..718 1..718 3847 100 Plus
pnt-PD 636 CG17077-PD 53..636 135..718 3144 99 Plus
pnt-PC 623 CG17077-PC 144..623 253..718 2153 85 Plus
pnt-PE 625 CG17077-PE 228..625 321..718 2151 99.5 Plus
Ets65A-PA 490 CG7018-PA 222..405 491..700 354 42.9 Plus