BO22344.complete Sequence
2242 bp assembled on 2010-01-08
GenBank Submission: KX797538
> BO22344.complete
GAAGTTATCAGTCGACATGAGCAGGACCTCCAGCCGCTCGCTCTTCCTGC
CGCTCTGCCTGCTCGTCCTGTCCGCGCTAAATGGCCCAGCGGCGGCGGCA
TCTCGCGTCCGCGTCAGCTCCTCGACCACCATGACCAGGAACATCGAGGA
GGAGAATGCCCTACTTTTACTTTTAGCTGGACCTCCCGTGCTATCTGAGT
CCATAATGGGTACGGTCGGCCGGCTGCCCTGCAACGTCACCCCGCCCATT
TACGAGGATCGAGTGGCGCTGGTTATCTGGTACAAAGTTGGCCTGAAGAC
TCCCATTTACAGTGTGGACACACGCGACTCGAACTTCGCCCAGGGAACGC
ACTGGTCGGATGAGACCTACCGGGAGCGGCTCTCCTTCCACGTGGAAGGA
CGTGCTGGCACGCTGACCATCAAGTCAACCACGGAGGACGACACGGGCGA
GTATCGCTGCCGCGTCGACTTCCAGAAGAGTCCGACTCGCAACTCCAAAG
TGAATTTAACTGTCATAATTCCGCCCGAGTCGGTGATTATATTGGACAGC
AAGGGTGTGACCATCGAGGATCACACGCTGGGTCCTTACAACGAGGGCTC
TGGGATAAACATCACGTGCGTGGCCATCGGCGGCCGCCCGCAGCCGAGGG
TTACCTGGCTGCATGGAAACACCGTCTACAAGAATGCCAGTGTGGGCCAA
CCCCTGTCCGAGCGACGGGTGGGCAATACCCTGTCCTTGGCTCGACTGGA
GCGCAGGAATCTTCACATGCAGCTAACGTGCCGGGCGGAGAACAATAATT
TGACAACGCCAATTATCAGCAGCGTCGTCCTCGACATGAACCTGCGTCCT
TTGATTGTGAAGCTGCAGGGGGAGAATCGAGCTCTGTCGGCGGGGAATTC
TTATCAGCTCAGTTGCGTTGTCATCGGAGCACGTCCAGCGCCGACGATTA
CCTGGTGGAAGGGCAGTACCCCCATGAAGAATACTCACGAGATTGCTACA
CCGGACGGTAATCTGACTACCTCGGTGCTGACATTCACGCCCACCATCGA
TGACCGCGGCAAGTTCCTCTCGTGTCGCGCGGAGCAGAGCATGATACCCG
AGTCCGGAATGGAGGACGGCTGGAAATTGGACATATATCACATACCGGTG
GTGAGCCTGGAGCTGGGAACCAATTCGCTTAACTCAACTCTGCGCGAGGG
AATCGATGTCTTCTTCGAGTGCAACATCAAATCGAATCCCTGGATATACG
AAGTTAGCTGGCGGCACAATGGTAAGATTCTAACCAACAATCCAGCCGAA
GGCATCGCCGTCTCCAACCAGAGTCTGGTGCTTCAAAATGCCAGCCGGGC
GAGAAGTGGCATCTACACCTGTGTGGGCAGTAATCGGGAGGGCGACGGCG
AGAGCAATCCCGTTCAGCTGGACATACGATTTGCTCCTGTTTGCCGACCT
CGCCAGCGTCTCTCCTATAGCTCGGGCAGGCATGAGACTGTCAAGGTGGC
CTGCGAAATTGATGCCAATCCCGCGGAGGCCACCTACGTTTGGAAATTCA
ATGCAACCCAGGGCGAAACAGTTGACATACCGGCTTCGCAAGTGGCCGTG
GATCGGGGCCGAAGTATAGCCCATTACACGCCCATGACGGAGAATGACTA
CGGTACGCTGCTCTGCTGGGCCACCAACGAAATTGGCGATCAAAGTGAAC
CCTGCGTATACACAATATTCCCAGCGGGCGAGCCGGATCCGTTGCTAAAC
TGCACGGTGCTCAACCAGACATCGACGGGCTTCCAAATCGAATGCATCGA
GGGCTTCAATGGCGGCCTGCAGCAGGACTTTATAATGGAGGTTTACATGA
ACGGAACGACACGACATCCCAAAATTTCAAAATCAAAGCGACCGTACTTT
GAGGTAAGCGGACTGGTGCCCGGAATGGGCTACAATGTCTTCCTCATTGC
CAACAACAGCAAGGGCCGTAGCAATGCCACCATTTTGCAGGTCTACACGC
TGAAGGATCCGGAGAAGCAGACGGTTAAAATAACATTCACTAAGTCCTTC
CAAGGACTTAGGCCTGCCTATACCAAAACAAAAGCGACAGCGACCACGAC
CAGCGACTGCGTTTGCGATGAGGATGAGTTCCTAAATCTGGGCAAGGGAA
TTAGCCACGACGAGGGCACAGACGCTGACCAGCAAGAAGGTAGCGGTGGA
CTATCCTTTTCTATAATTTTCTATGCAAGCTTTCTAGACCAT
BO22344.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12484-RA | 2211 | CG12484-PA | 1..2208 | 17..2224 | 11025 | 100 | Plus |
| CG12484-RB | 3606 | CG12484-PB | 1..2173 | 17..2189 | 10850 | 100 | Plus |
| CG12484-RD | 3585 | CG12484-PD | 1..2152 | 17..2189 | 10500 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12484-RA | 3109 | CG12484-RA | 550..2758 | 16..2224 | 11030 | 100 | Plus |
| CG12484-RB | 5113 | CG12484-RB | 550..2723 | 16..2189 | 10855 | 100 | Plus |
| CG12484-RD | 5092 | CG12484-RD | 550..2702 | 16..2189 | 10505 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20468208..20468423 | 1431..1646 | 1080 | 100 | Plus |
| 2R | 25286936 | 2R | 20464618..20464828 | 632..842 | 1055 | 100 | Plus |
| 2R | 25286936 | 2R | 20462001..20462209 | 310..518 | 1045 | 100 | Plus |
| 2R | 25286936 | 2R | 20470413..20470613 | 2024..2224 | 1005 | 100 | Plus |
| 2R | 25286936 | 2R | 20469465..20469626 | 1727..1888 | 810 | 100 | Plus |
| 2R | 25286936 | 2R | 20467618..20467777 | 1271..1430 | 800 | 100 | Plus |
| 2R | 25286936 | 2R | 20464926..20465078 | 843..995 | 765 | 100 | Plus |
| 2R | 25286936 | 2R | 20465647..20465791 | 995..1139 | 725 | 100 | Plus |
| 2R | 25286936 | 2R | 20429634..20429776 | 16..158 | 715 | 100 | Plus |
| 2R | 25286936 | 2R | 20469984..20470120 | 1888..2024 | 685 | 100 | Plus |
| 2R | 25286936 | 2R | 20459479..20459620 | 171..312 | 680 | 98.6 | Plus |
| 2R | 25286936 | 2R | 20466809..20466940 | 1140..1271 | 660 | 100 | Plus |
| 2R | 25286936 | 2R | 20463860..20463974 | 519..633 | 575 | 100 | Plus |
| 2R | 25286936 | 2R | 20468799..20468885 | 1646..1732 | 405 | 97.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:48:44 has no hits.
BO22344.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:38 Download gff for
BO22344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12484-RA | 554..2761 | 17..2226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:55 Download gff for
BO22344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12484-RA | 551..2758 | 17..2226 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:30 Download gff for
BO22344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12484-RA | 551..2758 | 17..2226 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:30 Download gff for
BO22344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20429635..20429776 | 17..158 | 100 | -> | Plus |
| 2R | 20431843..20431863 | 159..179 | 100 | -> | Plus |
| 2R | 20459488..20459620 | 180..312 | 100 | -> | Plus |
| 2R | 20462004..20462209 | 313..518 | 100 | -> | Plus |
| 2R | 20463860..20463973 | 519..632 | 100 | -> | Plus |
| 2R | 20464619..20464828 | 633..842 | 100 | -> | Plus |
| 2R | 20464926..20465077 | 843..994 | 100 | -> | Plus |
| 2R | 20465647..20465791 | 995..1139 | 100 | -> | Plus |
| 2R | 20466809..20466939 | 1140..1270 | 100 | -> | Plus |
| 2R | 20467618..20467777 | 1271..1430 | 100 | -> | Plus |
| 2R | 20468208..20468422 | 1431..1645 | 100 | -> | Plus |
| 2R | 20468799..20468880 | 1646..1727 | 98 | -> | Plus |
| 2R | 20469466..20469625 | 1728..1887 | 100 | -> | Plus |
| 2R | 20469984..20470120 | 1888..2024 | 100 | -> | Plus |
| 2R | 20470414..20470613 | 2025..2226 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:55 Download gff for
BO22344.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16355713..16355927 | 1431..1645 | 100 | -> | Plus |
| arm_2R | 16356304..16356385 | 1646..1727 | 98 | -> | Plus |
| arm_2R | 16356971..16357130 | 1728..1887 | 100 | -> | Plus |
| arm_2R | 16357489..16357625 | 1888..2024 | 100 | -> | Plus |
| arm_2R | 16357919..16358118 | 2025..2226 | 99 | | Plus |
| arm_2R | 16317140..16317281 | 17..158 | 100 | -> | Plus |
| arm_2R | 16319348..16319368 | 159..179 | 100 | -> | Plus |
| arm_2R | 16346993..16347125 | 180..312 | 100 | -> | Plus |
| arm_2R | 16349509..16349714 | 313..518 | 100 | -> | Plus |
| arm_2R | 16351365..16351478 | 519..632 | 100 | -> | Plus |
| arm_2R | 16352124..16352333 | 633..842 | 100 | -> | Plus |
| arm_2R | 16352431..16352582 | 843..994 | 100 | -> | Plus |
| arm_2R | 16353152..16353296 | 995..1139 | 100 | -> | Plus |
| arm_2R | 16354314..16354444 | 1140..1270 | 100 | -> | Plus |
| arm_2R | 16355123..16355282 | 1271..1430 | 100 | -> | Plus |
BO22344.pep Sequence
Translation from 16 to 2242
> BO22344.pep
MSRTSSRSLFLPLCLLVLSALNGPAAAASRVRVSSSTTMTRNIEEENALL
LLLAGPPVLSESIMGTVGRLPCNVTPPIYEDRVALVIWYKVGLKTPIYSV
DTRDSNFAQGTHWSDETYRERLSFHVEGRAGTLTIKSTTEDDTGEYRCRV
DFQKSPTRNSKVNLTVIIPPESVIILDSKGVTIEDHTLGPYNEGSGINIT
CVAIGGRPQPRVTWLHGNTVYKNASVGQPLSERRVGNTLSLARLERRNLH
MQLTCRAENNNLTTPIISSVVLDMNLRPLIVKLQGENRALSAGNSYQLSC
VVIGARPAPTITWWKGSTPMKNTHEIATPDGNLTTSVLTFTPTIDDRGKF
LSCRAEQSMIPESGMEDGWKLDIYHIPVVSLELGTNSLNSTLREGIDVFF
ECNIKSNPWIYEVSWRHNGKILTNNPAEGIAVSNQSLVLQNASRARSGIY
TCVGSNREGDGESNPVQLDIRFAPVCRPRQRLSYSSGRHETVKVACEIDA
NPAEATYVWKFNATQGETVDIPASQVAVDRGRSIAHYTPMTENDYGTLLC
WATNEIGDQSEPCVYTIFPAGEPDPLLNCTVLNQTSTGFQIECIEGFNGG
LQQDFIMEVYMNGTTRHPKISKSKRPYFEVSGLVPGMGYNVFLIANNSKG
RSNATILQVYTLKDPEKQTVKITFTKSFQGLRPAYTKTKATATTTSDCVC
DEDEFLNLGKGISHDEGTDADQQEGSGGLSFSIIFYASFLDH
BO22344.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12484-PA | 736 | CG12484-PA | 1..736 | 1..736 | 3861 | 100 | Plus |
| CG12484-PB | 1201 | CG12484-PB | 1..724 | 1..724 | 3800 | 100 | Plus |
| CG12484-PD | 1194 | CG12484-PD | 1..717 | 1..724 | 3754 | 99 | Plus |
| CG12484-PE | 1142 | CG12484-PE | 1..677 | 1..683 | 3470 | 97.1 | Plus |
| CG34114-PC | 760 | CG34114-PC | 38..646 | 63..676 | 1223 | 39.6 | Plus |
