Clone BO22345 Report

Search the DGRC for BO22345

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:223
Well:45
Vector:pDNR-Dual
Associated Gene/TranscriptRluA-1-RA
Protein status:BO22345.pep: Imported from assembly
Sequenced Size:2251

Clone Sequence Records

BO22345.complete Sequence

2251 bp assembled on 2010-01-08

GenBank Submission: KX796971

> BO22345.complete
GAAGTTATCAGTCGACATGCAGAATTCTCCGGCTCCGTGTGCCTGGTACT
TGCCCTGGTCCCTGGCCGCCCAGCAGCACCAGCAAAAGATGCTGCAAATG
CAGTCGCCGTTTCTGGACAAGATGGGCGCCACATCGGTGGGCGGCATCTT
CGCTGGCCAGCCGCAGATGCAGCAACAATTGTCGCCCAATACGGCAGCAG
CACCGCCGGCAAACTATCAGCAGCCCGCTTTGCATCCAAGCGCCGCACCA
GGCGCACCACACTTCCACATGGGATCCCCGTATAGCCATCTGGCACCGCA
GCTCCTCAACGCCGGACAGCTGAACCAGAACGCACTGATGCACTCCGCCA
TGTTCTCTTCCCTGCCACTTGGTGCGTACTATGCACCCGCCGCCGGCGCA
GGTCACTCGGCCTTTGGTGGCGTTCCCCTGACCACGGCTGCCCAGCAATC
TCTATTGGCCGCCACCGGAGGAGCAACTGCTGGCCATTTGGCCAACCAGC
AGACGACGGCTCAAGTGCCCGTCCAGGTGCCCGTGCAAATGGCCCAACGG
ACAGCTCCGGCCGCCTGCTCCATGGTCCAGCCACTTAACTGCCTGCCGCA
CCAGGAACTGAATCACCTGTCGTCCATCAATCTCAACCTGCTGCGCAGTC
CGGCGCCTCCGCTCCCAGCCATTCAGGTCTTGCCAAGTGCCGAGGTGCCG
ATTAATAAGAAGACTACTTCTCCCAGGGACTCTGAGAATCTTAAAATCAA
GGTTCCAGAAAAGCGGAAAACAGACGATAATGATCAGATAAAAGAGCTAA
AGAAAGCTAAACTGGAGACAAAAGCATTGAAGGCTAAGAGGCCGGGATTC
ACGGATGAAAGATACCAGGAAACATCCTACTATATGGAAAACGGTCTACG
CAAGGTGTATCCGTACTACTTTACATTCACAACATTTACAAAAGGTCGCT
GGGTGGGCGAAAAGATATTGGATATATTCTCGCGAGAATTTCGGGCACAT
CCCGCTGAGGAATATGAACGTTGTATCCAAACTGGCACATTGACAGTCAA
CTTTGAGAAGGTACCCATTGACTATCGGCTGAAACATAACGATCTTCTCG
CCAATATAGTTCACAGACACGAAGTTCCTGTGACTTGTCAACCAATTAAA
ATTGTGCATATGGATGAGGACATTGTAGTTGTAAATAAGCCAGCATCGAT
ACCTGTGCATCCGTGTGGACGTTATAGGCACAACACCGTAGTCTTCATTC
TGGCCAAGGAGTTCAATCTCAAGAATCTACGCACAATTCACCGACTAGAT
CGGTTGACCTCGGGACTCCTACTTTTTGGACGCAGTCCGAAGAAGGCGCG
CCAAATGGAGCAGCAGATTCGCAACAGGCAGGTGGAGAAGGAGTACATCT
GCAGGGTGGAGGGCGTTTTTCCAGATGGCATCGTGGAGTGCAAGGAGCCC
ATTGAAGTAGTTAGCTACAAGATTGGCGTGTGCAAAGTATCGGCCAAGGG
CAAGGATTGCACGACTACCTTCCAGAAGCTATCCCAAAATGGCACCACCA
GTGTGGTGCTCTGCAAACCACTCACTGGCCGAATGCATCAGATAAGAGTG
CACTTGCAATATTTAGGTTATCCCATTCTAAACGATCCACTGTACAATCA
CGAAGTCTTCGGTCCGCTGAAAGGACGATCCGGAGATATCGGTGGCAAGT
CGGATGAAGAGCTTATACGAGATCTCATAAACATACACAATGCAGAGAAC
TGGCTGGGCATAGATTGTGATTCGGATATATCCATGTTCAAGAGCACCAA
GGATGAGGCAGATCGGGAAAGTCTCAGCAGTGAGCACACTTCCGTTGTTC
ATCATAGCGATGATGATGGATGCGTCAATTCGCGGGAAACTACACCACCT
TGCAATGAGCCACAGCAGCCGGAAAATAGTGTTAAACTTTTAGAAACTAC
AAATGCAGTCAAGGAGTATCAAGTTGCGGCACAGAAGTCTTCCTCGGAAA
TTTGCCCAGCTCCACTGGATGCAGTGGAGAGTCCACTGAATGGAGGTGGA
TGCAATGTGGGCAAGGTGACAGTAGATGAGCATTGCTATGAGTGCAAAGT
GCACTACCGTGATCCAAAGTCAAAGGACCTTATAATGTATCTGCACGCAT
GGAAGTACAAGGGCCCTGGATGGGAGTACGAAACTGAGTTACCGAATTGG
GCCCGCAACGATTGGGACCACTTAGACTCGGCAGCAAGCTTTCTAGACCA
T

BO22345.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:48:41
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-1-RC 2220 CG31719-PC 1..2217 17..2233 11085 100 Plus
RluA-1-RB 2220 CG31719-PB 1..2217 17..2233 11085 100 Plus
RluA-1-RA 2220 CG31719-PA 1..2217 17..2233 11085 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:42
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-1-RC 2914 CG31719-RC 224..2440 17..2233 11085 100 Plus
RluA-1-RB 3207 CG31719-RB 517..2733 17..2233 11085 100 Plus
RluA-1-RA 3073 CG31719-RA 383..2599 17..2233 11085 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:38
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 10471476..10472171 712..17 3480 100 Minus
2L 23513712 2L 10463937..10464259 2162..1840 1600 99.7 Minus
2L 23513712 2L 10464313..10464547 1848..1614 1160 99.6 Minus
2L 23513712 2L 10465936..10466159 1116..893 1120 100 Minus
2L 23513712 2L 10464874..10465094 1425..1205 1105 100 Minus
2L 23513712 2L 10464620..10464812 1618..1426 965 100 Minus
2L 23513712 2L 10466357..10466452 806..711 480 100 Minus
2L 23513712 2L 10465287..10465380 1206..1113 470 100 Minus
2L 23513712 2L 10466213..10466302 895..806 450 100 Minus
2L 23513712 2L 10463814..10463887 2233..2160 370 100 Minus
2L 23513712 2L 10481766..10481860 1208..1302 220 82.1 Plus
2L 23513712 2L 10481620..10481708 1115..1203 205 82 Plus
Blast to na_te.dros performed on 2014-11-28 02:48:39 has no hits.

BO22345.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:37 Download gff for BO22345.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-1-RC 393..2609 17..2235 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:52 Download gff for BO22345.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-1-RA 383..2599 17..2235 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:29 Download gff for BO22345.complete
Subject Subject Range Query Range Percent Splice Strand
RluA-1-RA 383..2599 17..2235 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:29 Download gff for BO22345.complete
Subject Subject Range Query Range Percent Splice Strand
2L 10464874..10465094 1205..1425 100 <- Minus
2L 10465289..10465376 1117..1204 100 <- Minus
2L 10465936..10466158 894..1116 100 <- Minus
2L 10466215..10466302 806..893 100 <- Minus
2L 10466358..10466450 713..805 100 <- Minus
2L 10471476..10472171 17..712 100   Minus
2L 10463811..10463885 2162..2235 97 <- Minus
2L 10463938..10464254 1845..2161 100 <- Minus
2L 10464317..10464544 1617..1844 100 <- Minus
2L 10464622..10464812 1426..1616 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:52 Download gff for BO22345.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 10463811..10463885 2162..2235 97 <- Minus
arm_2L 10463938..10464254 1845..2161 100 <- Minus
arm_2L 10464317..10464544 1617..1844 100 <- Minus
arm_2L 10464622..10464812 1426..1616 100 <- Minus
arm_2L 10464874..10465094 1205..1425 100 <- Minus
arm_2L 10465289..10465376 1117..1204 100 <- Minus
arm_2L 10465936..10466158 894..1116 100 <- Minus
arm_2L 10466215..10466302 806..893 100 <- Minus
arm_2L 10466358..10466450 713..805 100 <- Minus
arm_2L 10471476..10472171 17..712 100   Minus

BO22345.pep Sequence

Translation from 16 to 2251

> BO22345.pep
MQNSPAPCAWYLPWSLAAQQHQQKMLQMQSPFLDKMGATSVGGIFAGQPQ
MQQQLSPNTAAAPPANYQQPALHPSAAPGAPHFHMGSPYSHLAPQLLNAG
QLNQNALMHSAMFSSLPLGAYYAPAAGAGHSAFGGVPLTTAAQQSLLAAT
GGATAGHLANQQTTAQVPVQVPVQMAQRTAPAACSMVQPLNCLPHQELNH
LSSINLNLLRSPAPPLPAIQVLPSAEVPINKKTTSPRDSENLKIKVPEKR
KTDDNDQIKELKKAKLETKALKAKRPGFTDERYQETSYYMENGLRKVYPY
YFTFTTFTKGRWVGEKILDIFSREFRAHPAEEYERCIQTGTLTVNFEKVP
IDYRLKHNDLLANIVHRHEVPVTCQPIKIVHMDEDIVVVNKPASIPVHPC
GRYRHNTVVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQ
IRNRQVEKEYICRVEGVFPDGIVECKEPIEVVSYKIGVCKVSAKGKDCTT
TFQKLSQNGTTSVVLCKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGP
LKGRSGDIGGKSDEELIRDLINIHNAENWLGIDCDSDISMFKSTKDEADR
ESLSSEHTSVVHHSDDDGCVNSRETTPPCNEPQQPENSVKLLETTNAVKE
YQVAAQKSSSEICPAPLDAVESPLNGGGCNVGKVTVDEHCYECKVHYRDP
KSKDLIMYLHAWKYKGPGWEYETELPNWARNDWDHLDSAASFLDH

BO22345.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:26
Subject Length Description Subject Range Query Range Score Percent Strand
RluA-1-PC 739 CG31719-PC 1..739 1..739 3947 100 Plus
RluA-1-PB 739 CG31719-PB 1..739 1..739 3947 100 Plus
RluA-1-PA 739 CG31719-PA 1..739 1..739 3947 100 Plus
RluA-1-PD 378 CG31719-PD 1..367 1..367 1932 100 Plus
RluA-2-PD 547 CG6187-PD 87..539 248..731 1626 66.1 Plus