BO22345.complete Sequence
2251 bp assembled on 2010-01-08
GenBank Submission: KX796971
> BO22345.complete
GAAGTTATCAGTCGACATGCAGAATTCTCCGGCTCCGTGTGCCTGGTACT
TGCCCTGGTCCCTGGCCGCCCAGCAGCACCAGCAAAAGATGCTGCAAATG
CAGTCGCCGTTTCTGGACAAGATGGGCGCCACATCGGTGGGCGGCATCTT
CGCTGGCCAGCCGCAGATGCAGCAACAATTGTCGCCCAATACGGCAGCAG
CACCGCCGGCAAACTATCAGCAGCCCGCTTTGCATCCAAGCGCCGCACCA
GGCGCACCACACTTCCACATGGGATCCCCGTATAGCCATCTGGCACCGCA
GCTCCTCAACGCCGGACAGCTGAACCAGAACGCACTGATGCACTCCGCCA
TGTTCTCTTCCCTGCCACTTGGTGCGTACTATGCACCCGCCGCCGGCGCA
GGTCACTCGGCCTTTGGTGGCGTTCCCCTGACCACGGCTGCCCAGCAATC
TCTATTGGCCGCCACCGGAGGAGCAACTGCTGGCCATTTGGCCAACCAGC
AGACGACGGCTCAAGTGCCCGTCCAGGTGCCCGTGCAAATGGCCCAACGG
ACAGCTCCGGCCGCCTGCTCCATGGTCCAGCCACTTAACTGCCTGCCGCA
CCAGGAACTGAATCACCTGTCGTCCATCAATCTCAACCTGCTGCGCAGTC
CGGCGCCTCCGCTCCCAGCCATTCAGGTCTTGCCAAGTGCCGAGGTGCCG
ATTAATAAGAAGACTACTTCTCCCAGGGACTCTGAGAATCTTAAAATCAA
GGTTCCAGAAAAGCGGAAAACAGACGATAATGATCAGATAAAAGAGCTAA
AGAAAGCTAAACTGGAGACAAAAGCATTGAAGGCTAAGAGGCCGGGATTC
ACGGATGAAAGATACCAGGAAACATCCTACTATATGGAAAACGGTCTACG
CAAGGTGTATCCGTACTACTTTACATTCACAACATTTACAAAAGGTCGCT
GGGTGGGCGAAAAGATATTGGATATATTCTCGCGAGAATTTCGGGCACAT
CCCGCTGAGGAATATGAACGTTGTATCCAAACTGGCACATTGACAGTCAA
CTTTGAGAAGGTACCCATTGACTATCGGCTGAAACATAACGATCTTCTCG
CCAATATAGTTCACAGACACGAAGTTCCTGTGACTTGTCAACCAATTAAA
ATTGTGCATATGGATGAGGACATTGTAGTTGTAAATAAGCCAGCATCGAT
ACCTGTGCATCCGTGTGGACGTTATAGGCACAACACCGTAGTCTTCATTC
TGGCCAAGGAGTTCAATCTCAAGAATCTACGCACAATTCACCGACTAGAT
CGGTTGACCTCGGGACTCCTACTTTTTGGACGCAGTCCGAAGAAGGCGCG
CCAAATGGAGCAGCAGATTCGCAACAGGCAGGTGGAGAAGGAGTACATCT
GCAGGGTGGAGGGCGTTTTTCCAGATGGCATCGTGGAGTGCAAGGAGCCC
ATTGAAGTAGTTAGCTACAAGATTGGCGTGTGCAAAGTATCGGCCAAGGG
CAAGGATTGCACGACTACCTTCCAGAAGCTATCCCAAAATGGCACCACCA
GTGTGGTGCTCTGCAAACCACTCACTGGCCGAATGCATCAGATAAGAGTG
CACTTGCAATATTTAGGTTATCCCATTCTAAACGATCCACTGTACAATCA
CGAAGTCTTCGGTCCGCTGAAAGGACGATCCGGAGATATCGGTGGCAAGT
CGGATGAAGAGCTTATACGAGATCTCATAAACATACACAATGCAGAGAAC
TGGCTGGGCATAGATTGTGATTCGGATATATCCATGTTCAAGAGCACCAA
GGATGAGGCAGATCGGGAAAGTCTCAGCAGTGAGCACACTTCCGTTGTTC
ATCATAGCGATGATGATGGATGCGTCAATTCGCGGGAAACTACACCACCT
TGCAATGAGCCACAGCAGCCGGAAAATAGTGTTAAACTTTTAGAAACTAC
AAATGCAGTCAAGGAGTATCAAGTTGCGGCACAGAAGTCTTCCTCGGAAA
TTTGCCCAGCTCCACTGGATGCAGTGGAGAGTCCACTGAATGGAGGTGGA
TGCAATGTGGGCAAGGTGACAGTAGATGAGCATTGCTATGAGTGCAAAGT
GCACTACCGTGATCCAAAGTCAAAGGACCTTATAATGTATCTGCACGCAT
GGAAGTACAAGGGCCCTGGATGGGAGTACGAAACTGAGTTACCGAATTGG
GCCCGCAACGATTGGGACCACTTAGACTCGGCAGCAAGCTTTCTAGACCA
T
BO22345.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:48:41
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-1-RC | 2220 | CG31719-PC | 1..2217 | 17..2233 | 11085 | 100 | Plus |
RluA-1-RB | 2220 | CG31719-PB | 1..2217 | 17..2233 | 11085 | 100 | Plus |
RluA-1-RA | 2220 | CG31719-PA | 1..2217 | 17..2233 | 11085 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-1-RC | 2914 | CG31719-RC | 224..2440 | 17..2233 | 11085 | 100 | Plus |
RluA-1-RB | 3207 | CG31719-RB | 517..2733 | 17..2233 | 11085 | 100 | Plus |
RluA-1-RA | 3073 | CG31719-RA | 383..2599 | 17..2233 | 11085 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:38
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 10471476..10472171 | 712..17 | 3480 | 100 | Minus |
2L | 23513712 | 2L | 10463937..10464259 | 2162..1840 | 1600 | 99.7 | Minus |
2L | 23513712 | 2L | 10464313..10464547 | 1848..1614 | 1160 | 99.6 | Minus |
2L | 23513712 | 2L | 10465936..10466159 | 1116..893 | 1120 | 100 | Minus |
2L | 23513712 | 2L | 10464874..10465094 | 1425..1205 | 1105 | 100 | Minus |
2L | 23513712 | 2L | 10464620..10464812 | 1618..1426 | 965 | 100 | Minus |
2L | 23513712 | 2L | 10466357..10466452 | 806..711 | 480 | 100 | Minus |
2L | 23513712 | 2L | 10465287..10465380 | 1206..1113 | 470 | 100 | Minus |
2L | 23513712 | 2L | 10466213..10466302 | 895..806 | 450 | 100 | Minus |
2L | 23513712 | 2L | 10463814..10463887 | 2233..2160 | 370 | 100 | Minus |
2L | 23513712 | 2L | 10481766..10481860 | 1208..1302 | 220 | 82.1 | Plus |
2L | 23513712 | 2L | 10481620..10481708 | 1115..1203 | 205 | 82 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:48:39 has no hits.
BO22345.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:37 Download gff for
BO22345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-1-RC | 393..2609 | 17..2235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:52 Download gff for
BO22345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-1-RA | 383..2599 | 17..2235 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:29 Download gff for
BO22345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
RluA-1-RA | 383..2599 | 17..2235 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:29 Download gff for
BO22345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 10464874..10465094 | 1205..1425 | 100 | <- | Minus |
2L | 10465289..10465376 | 1117..1204 | 100 | <- | Minus |
2L | 10465936..10466158 | 894..1116 | 100 | <- | Minus |
2L | 10466215..10466302 | 806..893 | 100 | <- | Minus |
2L | 10466358..10466450 | 713..805 | 100 | <- | Minus |
2L | 10471476..10472171 | 17..712 | 100 | | Minus |
2L | 10463811..10463885 | 2162..2235 | 97 | <- | Minus |
2L | 10463938..10464254 | 1845..2161 | 100 | <- | Minus |
2L | 10464317..10464544 | 1617..1844 | 100 | <- | Minus |
2L | 10464622..10464812 | 1426..1616 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:52 Download gff for
BO22345.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 10463811..10463885 | 2162..2235 | 97 | <- | Minus |
arm_2L | 10463938..10464254 | 1845..2161 | 100 | <- | Minus |
arm_2L | 10464317..10464544 | 1617..1844 | 100 | <- | Minus |
arm_2L | 10464622..10464812 | 1426..1616 | 100 | <- | Minus |
arm_2L | 10464874..10465094 | 1205..1425 | 100 | <- | Minus |
arm_2L | 10465289..10465376 | 1117..1204 | 100 | <- | Minus |
arm_2L | 10465936..10466158 | 894..1116 | 100 | <- | Minus |
arm_2L | 10466215..10466302 | 806..893 | 100 | <- | Minus |
arm_2L | 10466358..10466450 | 713..805 | 100 | <- | Minus |
arm_2L | 10471476..10472171 | 17..712 | 100 | | Minus |
BO22345.pep Sequence
Translation from 16 to 2251
> BO22345.pep
MQNSPAPCAWYLPWSLAAQQHQQKMLQMQSPFLDKMGATSVGGIFAGQPQ
MQQQLSPNTAAAPPANYQQPALHPSAAPGAPHFHMGSPYSHLAPQLLNAG
QLNQNALMHSAMFSSLPLGAYYAPAAGAGHSAFGGVPLTTAAQQSLLAAT
GGATAGHLANQQTTAQVPVQVPVQMAQRTAPAACSMVQPLNCLPHQELNH
LSSINLNLLRSPAPPLPAIQVLPSAEVPINKKTTSPRDSENLKIKVPEKR
KTDDNDQIKELKKAKLETKALKAKRPGFTDERYQETSYYMENGLRKVYPY
YFTFTTFTKGRWVGEKILDIFSREFRAHPAEEYERCIQTGTLTVNFEKVP
IDYRLKHNDLLANIVHRHEVPVTCQPIKIVHMDEDIVVVNKPASIPVHPC
GRYRHNTVVFILAKEFNLKNLRTIHRLDRLTSGLLLFGRSPKKARQMEQQ
IRNRQVEKEYICRVEGVFPDGIVECKEPIEVVSYKIGVCKVSAKGKDCTT
TFQKLSQNGTTSVVLCKPLTGRMHQIRVHLQYLGYPILNDPLYNHEVFGP
LKGRSGDIGGKSDEELIRDLINIHNAENWLGIDCDSDISMFKSTKDEADR
ESLSSEHTSVVHHSDDDGCVNSRETTPPCNEPQQPENSVKLLETTNAVKE
YQVAAQKSSSEICPAPLDAVESPLNGGGCNVGKVTVDEHCYECKVHYRDP
KSKDLIMYLHAWKYKGPGWEYETELPNWARNDWDHLDSAASFLDH
BO22345.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
RluA-1-PC | 739 | CG31719-PC | 1..739 | 1..739 | 3947 | 100 | Plus |
RluA-1-PB | 739 | CG31719-PB | 1..739 | 1..739 | 3947 | 100 | Plus |
RluA-1-PA | 739 | CG31719-PA | 1..739 | 1..739 | 3947 | 100 | Plus |
RluA-1-PD | 378 | CG31719-PD | 1..367 | 1..367 | 1932 | 100 | Plus |
RluA-2-PD | 547 | CG6187-PD | 87..539 | 248..731 | 1626 | 66.1 | Plus |