BO22352.complete Sequence
2455 bp assembled on 2010-01-08
GenBank Submission: KX800006
> BO22352.complete
GAAGTTATCAGTCGACATGCCATCCGTGAAATCCGCCGAAAGTGAGATTC
TTCTTGGGATTATAAGGAGCGACAGCATGACGAGCGGCAATTCCCTGAGG
TCCTGCCTCCTGCTGGCCACCATCCTGGGATTACTCTGCCGGACGAAGGC
TTTGCCCTTTGAGTATTTAGACGAGCACGAGGACTTCAACTACGACCTGG
ACACGGCGCAGTCCCAGGCCAAGTACGACGCCCGTCTGCTCTCGCAGCAG
ATGCTCAGCGATGCAGAGCTGCAGCGGCAGGGGCTGAGCGACGGCCAGGA
CAACGCCCTGGATGGCGACTCCGCGGCAGCTCAGGGGACTGGAGCAGGGT
CCCACTTGGATGCGGTATCCTCTGTCCACGACGACCTGGAGCCGCACAGC
AGGGCAGCGGCGTGCTTCACCAACGGGCACAAGTACACGCACGGACAGAA
GGTTCCGCGCCTGGATGCCTGCGAGGTGTGTCTCTGCATGGACGGCGAGA
TCTTCTGCTGGTGGGAGAAGTGCGATAAGGCCAATGTAAACAAGGCGAGG
ACGGCGGGGGACAACGCAGGACTTGGACTTGGTGTCGAGGACGACGGCGA
CGGCAATGGCAATGGCGATGGCGATGGTGACTATTCAGATCCATATCGCC
ACGAGAGCACAACGGGAAAGTCAACAAAAGTGCATAAAGCGGCGAGGAAA
GTTGGCAAGCGGCATAAGCATCGCAAGAATCAAAAGAATTTTAATGACTA
CGAAGTTTACCACAGCCAGCGGGAGAAGCAGCAGCAGCAGCAGTCGGATT
ATAAAAAGTCCGCCATAAAGCAGCAGCTCCAGATGCAGCAAAAACACAAA
AGCGACAAGAGCGGTGCTGGCAACTACAATATAATCAAGCAACACAAACA
CGAGCAGCAGCAGCAGCAGCTCAAAATACCGCAGCAGCTACATCAGCAAC
AGCAGCAACAGAATGTGGCAGCTTTGGGTGTTAATCACGCAGCAAAGGCA
ACGCATTATCAGCAGGCAGCTTCGACGCCCCTGCCAACTCCCCCACCCCC
GTCGGAGCACCCGCAGCACAGCCACCACCCACACCAACAGGCGCACTCGT
CCAGCAAAATCCTCAACTTCCCCGAGAACTTGCCAGCCCTGCTCTACTAC
GACTACAAGACGGAGGAGCACGAGCACCACCAGCACCAGCACCACCAGCA
GCACTTGCTGCACGAAAAACAGCGCTTGCTGCAGCAGCAGCAGCAGCAAC
AGCAACAGCAGCAGCAGATGGTGCAGCAAGAGGCGTTGGCGCGACAAAAG
GCATCTGAATCCGCATCTGAGCCCGAATCGCGGGCCGGAGGCACAGCAGA
GGGAGGCGTTGAACCCAGCGGAGACTTGGCCGCTGATAAAAACTCTGATG
AGGCGGAAACCGACAGCGATATTCTGCCAGAGCCGCCTACAAAGCAGCCC
AGGGCAGCTGCCACACAATGGCCAACTCCATCTAGTAACAGCTCGGCCAG
GGCGTTGATGACGAGCAACGTGGCATCCACATCCACGGCTGCGACAACGA
CAACGACAAAGACATCGAAAACGAAAACGACAACGGCGACAACGGGAAGG
ACGACGACGACGACAACGGCGACAGGCACAAATGAAATGGTGACAAGCAC
GCTGTCTGGAATGGAGAAGTCCGGGGCCACAGTTGCAGCCACAGATCTTG
GACAGATGCAACCCGATCGCCGTGGACCAGACGCGGAGCGAGACGACGCC
TTCCACCGCTGGCTGACATCCACCGAGCTGAATGCTGACAACACAAACTC
CATGGACGACAGCCTGGAGCGGGAAACGCCGGCATCGACAATAATCGATG
ATGTTGGCACGGCCAACAAGAGTGACAGGAGCATCGGCGGCATCGGTGGC
ATCGGCAAAGACAATGGCAACGACGCCGTCTTCTTTCGCAGCTCGTACAA
CGATTACAGCAGCGAATTCAATGGGAGCGTTGTCAATATTGACATTACAC
TAACTGCAGTTGATGTGCATCCCCGTCGCCAAACGGATTTAATTGCAAAT
GGCAACAGAACGTCAGGCGCTAACGACAATGGCAACAGCTGTAGCAGCCA
GGTTGGAGCAGCAGGAACAACAATGAACCCAGTGGCAGTCAGCACCAGCA
GCAGCACCAGGAGCAGCAACAATCAGGATCAGCCTCAGCAGAGCCCTGTT
GTCCCGCCGTACACCCTGACAACGATTATAACAACTGCGCCGATGGCACC
AGGGCGTATGTGCAATGTTTTGGGCAAACTGTATAAAATTGGTGACATTC
TGCCGCAGGACACGGGCAACTGCCTGCAGTGCATTTGCACGGATGCCGTG
ACTCCCGACGAGATGCCGAGCGTCACCTGCAGTCCGCACAATTGCCCACC
GCTGGTTCTTCCGGATCTGTTCGATGCGACTGGTTACGCAAGCTTTCTAG
ACCAT
BO22352.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:48:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15236-RA | 2424 | CG15236-PA | 1..2421 | 17..2437 | 12105 | 100 | Plus |
CG15236-RB | 2424 | CG15236-PB | 1..2421 | 17..2437 | 12105 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:48:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15236-RA | 4817 | CG15236-RA | 727..3147 | 17..2437 | 12105 | 100 | Plus |
CG15236-RB | 4758 | CG15236-RB | 668..3088 | 17..2437 | 12105 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:48:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 6833754..6834926 | 524..1696 | 5865 | 100 | Plus |
2R | 25286936 | 2R | 6835493..6836070 | 1697..2274 | 2890 | 100 | Plus |
2R | 25286936 | 2R | 6832629..6832933 | 149..453 | 1525 | 100 | Plus |
2R | 25286936 | 2R | 6836526..6836690 | 2273..2437 | 825 | 100 | Plus |
2R | 25286936 | 2R | 6829916..6830048 | 17..149 | 665 | 100 | Plus |
2R | 25286936 | 2R | 6833613..6833687 | 450..524 | 375 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 02:48:34 has no hits.
BO22352.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:35 Download gff for
BO22352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15236-RA | 534..2954 | 17..2439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:27:50 Download gff for
BO22352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15236-RB | 668..3088 | 17..2439 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:28 Download gff for
BO22352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG15236-RB | 668..3088 | 17..2439 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:28 Download gff for
BO22352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 6829916..6830048 | 17..149 | 100 | -> | Plus |
2R | 6832630..6832931 | 150..451 | 100 | -> | Plus |
2R | 6833615..6833687 | 452..524 | 100 | -> | Plus |
2R | 6833755..6834926 | 525..1696 | 100 | -> | Plus |
2R | 6835493..6836069 | 1697..2273 | 100 | -> | Plus |
2R | 6836527..6836690 | 2274..2439 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:27:50 Download gff for
BO22352.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 2717421..2717553 | 17..149 | 100 | -> | Plus |
arm_2R | 2720135..2720436 | 150..451 | 100 | -> | Plus |
arm_2R | 2721120..2721192 | 452..524 | 100 | -> | Plus |
arm_2R | 2721260..2722431 | 525..1696 | 100 | -> | Plus |
arm_2R | 2722998..2723574 | 1697..2273 | 100 | -> | Plus |
arm_2R | 2724032..2724195 | 2274..2439 | 98 | | Plus |
BO22352.pep Sequence
Translation from 16 to 2455
> BO22352.pep
MPSVKSAESEILLGIIRSDSMTSGNSLRSCLLLATILGLLCRTKALPFEY
LDEHEDFNYDLDTAQSQAKYDARLLSQQMLSDAELQRQGLSDGQDNALDG
DSAAAQGTGAGSHLDAVSSVHDDLEPHSRAAACFTNGHKYTHGQKVPRLD
ACEVCLCMDGEIFCWWEKCDKANVNKARTAGDNAGLGLGVEDDGDGNGNG
DGDGDYSDPYRHESTTGKSTKVHKAARKVGKRHKHRKNQKNFNDYEVYHS
QREKQQQQQSDYKKSAIKQQLQMQQKHKSDKSGAGNYNIIKQHKHEQQQQ
QLKIPQQLHQQQQQQNVAALGVNHAAKATHYQQAASTPLPTPPPPSEHPQ
HSHHPHQQAHSSSKILNFPENLPALLYYDYKTEEHEHHQHQHHQQHLLHE
KQRLLQQQQQQQQQQQQMVQQEALARQKASESASEPESRAGGTAEGGVEP
SGDLAADKNSDEAETDSDILPEPPTKQPRAAATQWPTPSSNSSARALMTS
NVASTSTAATTTTTKTSKTKTTTATTGRTTTTTTATGTNEMVTSTLSGME
KSGATVAATDLGQMQPDRRGPDAERDDAFHRWLTSTELNADNTNSMDDSL
ERETPASTIIDDVGTANKSDRSIGGIGGIGKDNGNDAVFFRSSYNDYSSE
FNGSVVNIDITLTAVDVHPRRQTDLIANGNRTSGANDNGNSCSSQVGAAG
TTMNPVAVSTSSSTRSSNNQDQPQQSPVVPPYTLTTIITTAPMAPGRMCN
VLGKLYKIGDILPQDTGNCLQCICTDAVTPDEMPSVTCSPHNCPPLVLPD
LFDATGYASFLDH
BO22352.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:03:19
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG15236-PA | 807 | CG15236-PA | 1..807 | 1..807 | 4254 | 100 | Plus |
CG15236-PB | 807 | CG15236-PB | 1..807 | 1..807 | 4254 | 100 | Plus |
Smr-PF | 3601 | CG4013-PF | 22..307 | 192..474 | 217 | 26.9 | Plus |
Smr-PE | 3601 | CG4013-PE | 22..307 | 192..474 | 217 | 26.9 | Plus |
Smr-PD | 3601 | CG4013-PD | 22..307 | 192..474 | 217 | 26.9 | Plus |
Smr-PF | 3601 | CG4013-PF | 21..300 | 192..460 | 204 | 24.3 | Plus |
Smr-PE | 3601 | CG4013-PE | 21..300 | 192..460 | 204 | 24.3 | Plus |
Smr-PF | 3601 | CG4013-PF | 108..398 | 203..467 | 190 | 25.5 | Plus |
Smr-PE | 3601 | CG4013-PE | 108..398 | 203..467 | 190 | 25.5 | Plus |