BO22450.complete Sequence
2431 bp assembled on 2010-01-08
GenBank Submission: KX795928
> BO22450.complete
GAAGTTATCAGTCGACATGAGAGATTGGCAAACATTCCCGGACCTCCAAA
AAAAGAAAGTTTCGCGTGACCATTTAAATTGCCCTGCAACAATGGCAGGT
TCAAACGTTTTGTGGCCAATACTCCTGGCCGTGGTGCTGCTCCAAATATC
CGTGGCATTCGTGAGTGGAGCGGCCAGTGGTGGGGTAGTCCTTAGCGACG
TGAACAACATGTTGCGCGATGCCAAGGTGGTGACCTCGGAGAAACCCGTT
GTGCACTCAAAACAGGAAACGGAAGCGCCGGAATCCAGCGTGGAGCTGCT
CCGCTTCGTCGATGATGACGAGGATAGCGAGGACATCAGCTCCATTGAAC
GGCAGGATGGCAGGACAATGGAGAGCAAAAAAATGGCCGATCAGGTGCGC
CTGTTGACCAAGCAGCTCAACGCCCTGATGCTGCGGCGCCGCGAGGATTA
CGAGATGCTGGAGCACAATCTGCGCAAATCCCTGCGGCTCACCACGAATG
CGAACAGCGTGGACGCCGACATGCGCAGCGAACTGAACCAACTCAGGGAG
GAGCTGGCCGCGCTGCGCTCCTCGCAGAGTGGCAACAAGGAGCGCTTGAC
CGTCGAGTGGCTGCAGCAGACGATCTCCGAGATCCGCAAACAGCTGGTGG
ATCTGCAAAGGACGGCCAGCAACGTGGCCCAGGATGTCCAGCAGCGCAGC
TCCACCTTTGAGGATCTGGCCACCATTCGCAGTGACTATCAGCAGCTTAA
GCTAGATCTGGCCGCTCAGCGCGAGCGCCAGCAGCAGACGGAGGTCTACG
TCCAGGAACTGCGCGAGGAGATGCTCCAGCAGGAGCAGGACTTCCAGCAT
GCCCTCGTCAAGCTGCAGCAGAGGACTCGCAAGGACGGCTCATCCGCCAG
TGTGGAGGAGGAGAGCGGTAGCCAGGAAGCCAACCAGGAGCAAACCGGAC
TTGAAACCACTGCTGATCACAAGCGACGCCATTGCCGTTTTCAGAGCGAA
CAGATCCACCAGCTGCAACTGGCCCAGAGGAACCTGCGCCGACAGGTGAA
CGGATTGCGCTTCCACCACATCGACGAGCGGGTTCGCAGCATCGAGGTGG
AGCAGCACAGGATTGCCAATGCCAACTTTAATTTGAGCAGCCAGATCGCT
TCGCTGGACAAGCTGCATACCTCGATGCTGGAGCTGCTGGAAGATGTGGA
GGGCCTCCAGACCAAGATGGACAAGAGCATACCGGAGCTGCGGCACGAGA
TCTCCAAGCTGGAGTTCGCCAATGCTCAGATCACCTCGGAGCAGAGTCTG
ATCAGGGAGGAGGGCACTAATGCGGCACGATCCCTGCAAGCCATGGCTGT
AAGCGTCAGTGTCCTGCAGGAGGAGCGCGAAGGTATGCGGAAGCTGTCCG
CCAATGTGGATCAGCTGAGAACCAATGTGGATCGATTGCAGTCGCTGGTC
AATGATGAAATGAAGAATAAGCTCACCCACCTGAACAAGCCGCACAAGCG
ACCACATCATCAGAATGTCCAGGCGCAGATGCCGCAGGATGATTCGCCCA
TTGACTCCGTCCTGGCCGAAACTCTGGTCAGCGAGCTTGAGAACGTGGAG
ACCCAGTACGAGGCCATTATCAACAAACTGCCGCACGACTGCAGCGAGGT
GCACACTCAAACAGACGGACTGCATCTGATTGCGCCCGCCGGCCAACGGC
ATCCGCTGATGACGCACTGCACCGCCGATGGATGGACGACGGTGCAAAGG
CGGTTCGATGGCAGTGCAGACTTCAACCGCTCGTGGGCGGATTATGCCCA
AGGATTTGGGGCGCCAGGCGGTGAATTCTGGATTGGCAACGAGCAGCTGC
ATCACCTGACCCTGGACAACTGCAGTCGGCTGCAGGTGCAAATGCAGGAC
ATCTACGACAACGTTTGGGTGGCCGAGTACAAGCGATTCTACATATCCTC
GCGAGCCGATGGCTATCGGCTGCACATTGCCGAGTACTCCGGCAACGCTT
CGGATGCACTGAACTACCAACAGGGTATGCAGTTCTCGGCCATCGATGAC
GATCGGGACATCTCGCAGACGCACTGTGCTGCTAACTATGAGGGTGGCTG
GTGGTTCTCTCATTGCCAGCACGCCAATCTCAATGGGCGATACAATCTGG
GCCTGACTTGGTTCGATGCCGCTCGCAATGAATGGATAGCGGTCAAGTCA
AGCCGAATGCTGGTCAAGCGCCTGCCCGCCGTCGAGTGCCAGGCGAATGC
CAGTGCCAGTGGCGCTTTTGTTTCCGTTTCCGGTTCGGCTGCTGATGCTG
CGCCGTCGAGCGGTGCAACAACAACAACAACAACAGCAACAGCAGCGCCG
GCGACGGTAACGACGCCGAAAACCAACAACAGTGTGGTCCAGTTCGTGGC
CGCCGGGCAGGCGGCAAGCTTTCTAGACCAT
BO22450.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 01:47:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sca-RB | 2400 | CG17579-PB | 1..2397 | 17..2413 | 11985 | 100 | Plus |
| sca-RA | 2400 | CG17579-PA | 1..2397 | 17..2413 | 11985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 01:47:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sca-RB | 3796 | CG17579-RB | 323..2719 | 17..2413 | 11985 | 100 | Plus |
| sca-RA | 2876 | CG17579-RA | 323..2719 | 17..2413 | 11985 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 01:47:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12799990..12800933 | 1470..2413 | 4720 | 100 | Plus |
| 2R | 25286936 | 2R | 12799258..12799790 | 939..1471 | 2665 | 100 | Plus |
| 2R | 25286936 | 2R | 12780863..12781393 | 17..547 | 2655 | 100 | Plus |
| 2R | 25286936 | 2R | 12784345..12784742 | 543..940 | 1990 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 01:47:11 has no hits.
BO22450.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:29 Download gff for
BO22450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sca-RB | 320..2716 | 17..2415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:01:57 Download gff for
BO22450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sca-RA | 323..2719 | 17..2415 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 02:31:46 Download gff for
BO22450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sca-RA | 323..2719 | 17..2415 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 02:31:46 Download gff for
BO22450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12784349..12784742 | 547..940 | 100 | -> | Plus |
| 2R | 12780863..12781392 | 17..546 | 100 | -> | Plus |
| 2R | 12799260..12799790 | 941..1471 | 100 | -> | Plus |
| 2R | 12799992..12800933 | 1472..2415 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:01:57 Download gff for
BO22450.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8668368..8668897 | 17..546 | 100 | -> | Plus |
| arm_2R | 8671854..8672247 | 547..940 | 100 | -> | Plus |
| arm_2R | 8686765..8687295 | 941..1471 | 100 | -> | Plus |
| arm_2R | 8687497..8688438 | 1472..2415 | 99 | | Plus |
BO22450.pep Sequence
Translation from 16 to 2431
> BO22450.pep
MRDWQTFPDLQKKKVSRDHLNCPATMAGSNVLWPILLAVVLLQISVAFVS
GAASGGVVLSDVNNMLRDAKVVTSEKPVVHSKQETEAPESSVELLRFVDD
DEDSEDISSIERQDGRTMESKKMADQVRLLTKQLNALMLRRREDYEMLEH
NLRKSLRLTTNANSVDADMRSELNQLREELAALRSSQSGNKERLTVEWLQ
QTISEIRKQLVDLQRTASNVAQDVQQRSSTFEDLATIRSDYQQLKLDLAA
QRERQQQTEVYVQELREEMLQQEQDFQHALVKLQQRTRKDGSSASVEEES
GSQEANQEQTGLETTADHKRRHCRFQSEQIHQLQLAQRNLRRQVNGLRFH
HIDERVRSIEVEQHRIANANFNLSSQIASLDKLHTSMLELLEDVEGLQTK
MDKSIPELRHEISKLEFANAQITSEQSLIREEGTNAARSLQAMAVSVSVL
QEEREGMRKLSANVDQLRTNVDRLQSLVNDEMKNKLTHLNKPHKRPHHQN
VQAQMPQDDSPIDSVLAETLVSELENVETQYEAIINKLPHDCSEVHTQTD
GLHLIAPAGQRHPLMTHCTADGWTTVQRRFDGSADFNRSWADYAQGFGAP
GGEFWIGNEQLHHLTLDNCSRLQVQMQDIYDNVWVAEYKRFYISSRADGY
RLHIAEYSGNASDALNYQQGMQFSAIDDDRDISQTHCAANYEGGWWFSHC
QHANLNGRYNLGLTWFDAARNEWIAVKSSRMLVKRLPAVECQANASASGA
FVSVSGSAADAAPSSGATTTTTTATAAPATVTTPKTNNSVVQFVAAGQAA
SFLDH
BO22450.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:01:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sca-PB | 799 | CG17579-PB | 1..799 | 1..799 | 4080 | 100 | Plus |
| sca-PA | 799 | CG17579-PA | 1..799 | 1..799 | 4080 | 100 | Plus |
| CG30281-PA | 291 | CG30281-PA | 32..283 | 517..749 | 339 | 33.5 | Plus |
| CG8642-PB | 429 | CG8642-PB | 53..384 | 352..712 | 334 | 27.8 | Plus |
| CG31832-PB | 227 | CG31832-PB | 22..193 | 539..709 | 315 | 37.4 | Plus |
