BO22453.complete Sequence
2563 bp assembled on 2010-01-08
GenBank Submission: KX799560
> BO22453.complete
GAAGTTATCAGTCGACATGGCTGATGATCAGGGACGTGGACGCAGGCGTC
CACTTAACGAAGATGATTCCTCTACTTCCCGAGGTAGTGGTGATGGGCCG
CGGGTGAAAGTATTCAGAGGATCTTCATCAGGTGACCCGAGAGCGGATCC
TCGTATAGAGGCTTCAAGAGAGAGAAGAGCTCTCGAGGAAGCTCCCAGGC
GTGAAGGTGGCCCGACAGAGCGAAAGCCGTGGGGTGACCAATATGATTAC
CTGAATACCCGTCCGGCTGAGCTGGTATCCAAGAAGGGAACCGATGGCGT
CCCGGTCATGCTGCAGACGAACTTTTTCCGATTAAAAACCAAGCCGGAAT
GGCGGATCGTTCATTATCACGTGGAGTTTGAGCCGAGCATCGAGAATCCT
CGTGTCCGTATGGGAGTTTTGTCCAATCATGCTAACCTTCTGGGATCAGG
CTATCTATTCGATGGACTGCAACTGTTCACCACCAGGAAATTCGAGCAGG
AAATCACGGTGCTCAGCGGAAAGTCGAAGCTGGACATTGAATACAAGATA
TCCATAAAGTTCGTTGGATTCATATCGTGTGCTGAGCCCCGCTTTTTGCA
AGTCTTAAATCTAATATTGCGCCGCTCCATGAAGGGCCTAAATTTGGAAT
TAGTTGGCCGTAATCTCTTTGATCCCCGAGCTAAGATCGAAATAAGGGAG
TTCAAAATGGAGCTATGGCCGGGCTATGAGACATCGATTCGTCAGCACGA
AAAAGATATTTTATTGGGCACCGAAATAACTCACAAAGTTATGCGCACCG
AGACGATCTACGACATAATGCGACGTTGCTCACACAATCCGGCTCGTCAT
CAGGACGAAGTACGGGTAAATGTTTTGGACTTGATTGTCCTTACGGATTA
CAATAACAGAACTTATCGTATCAATGATGTCGACTTTGGACAAACTCCGA
AATCAACATTCAGTTGCAAGGGTAGAGATATCAGTTTCGTGGAATACTAT
CTCACTAAATATAATATACGCATTCGCGACCACAATCAGCCGCTGCTGAT
CTCCAAAAATAGGGACAAGGCTCTAAAAACTAACGCTAGCGAATTAGTGG
TACTAATTCCTGAGCTCTGCCGAGTGACTGGGCTCAATGCCGAGATGCGC
TCAAACTTTCAGCTTATGCGTGCCATGAGCAGTTATACGCGAATGAACCC
CAAACAACGCACTGATCGATTGCGCGCTTTTAACCACCGTTTACAAAACA
CTCCAGAAAGTGTGAAGGTCTTGAGAGACTGGAACATGGAACTGGACAAG
AACGTCACAGAAGTACAAGGCCGGATAATTGGACAGCAGAACATCGTGTT
TCATAATGGAAAGGTTCCTGCTGGAGAAAACGCTGATTGGCAAAGGCACT
TCAGAGACCAAAGGATGCTTACCACTCCGAGCGATGGCCTCGATCGTTGG
GCTGTCATCGCGCCGCAAAGGAATTCCCATGAACTCCGAACTCTACTTGA
CTCTTTGTATAGAGCAGCTAGTGGAATGGGTCTTAGAATTCGAAGCCCCC
AGGAATTCATAATTTATGATGATCGCACTGGAACTTATGTGAGAGCAATG
GATGATTGTGTGCGCTCAGATCCCAAACTTATATTATGCCTCGTACCCAA
TGATAACGCCGAAAGATACTCATCAATCAAAAAGAGAGGATACGTTGACA
GGGCGGTGCCAACTCAAGTTGTGACCCTTAAAACGACCAAGAACCGTAGC
CTTATGAGCATTGCCACCAAAATAGCAATCCAACTGAATTGCAAGTTGGG
ATATACACCCTGGATGATCGAACTACCCTTGTCCGGACTGATGACAATTG
GCTTTGACATTGCGAAGAGCACACGAGATCGGAAGAGGGCCTACGGAGCA
TTGATTGCCTCAATGGATCTACAGCAAAACTCCACGTACTTCAGCACAGT
CACGGAGTGCAGCGCCTTTGATGTGCTCGCTAACACCCTTTGGCCGATGA
TAGCAAAGGCCCTGCGCCAATATCAACATGAGCATAGGAAGCTGCCATCT
CGAATCGTATTTTATCGAGACGGTGTGAGCTCCGGCTCTCTAAAGCAGCT
TTTTGAATTTGAAGTCAAGGACATCATTGAGAAGTTGAAAACTGAATACG
CCCGCGTCCAGCTAAGCCCACCGCAATTAGCTTATATTGTGGTAACCAGA
TCCATGAACACGCGCTTCTTCCTCAACGGACAAAATCCTCCGCCTGGTAC
TATAGTTGATGACGTTATAACTCTGCCCGAGAGATACGACTTTTATCTGG
TCTCGCAACAAGTTCGTCAGGGTACAGTGTCGCCGACCAGCTACAATGTT
CTTTATAGCAGCATGGGTCTCTCACCGGAGAAAATGCAAAAACTTACGTA
CAAGATGTGCCACTTGTACTACAATTGGTCGGGCACCACACGAGTGCCAG
CAGTTTGCCAGTACGCTAAGAAGCTAGCTACCCTCGTGGGTACGAACTTG
CACTCTATTCCGCAAAACGCGCTCGAAAAGAAGTTTTATTATCTAGCAAG
CTTTCTAGACCAT
BO22453.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:49:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| piwi-RB | 2532 | CG6122-PB | 1..2529 | 17..2545 | 12645 | 100 | Plus |
| piwi-RA | 2532 | CG6122-PA | 1..2529 | 17..2545 | 12645 | 100 | Plus |
| aub-RC | 2388 | CG6137-PC | 539..629 | 714..804 | 185 | 80.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| piwi-RB | 2969 | CG6122-RB | 89..2617 | 17..2545 | 12645 | 100 | Plus |
| piwi-RA | 3073 | CG6122-RA | 89..2617 | 17..2545 | 12645 | 100 | Plus |
| aub-RC | 2808 | CG6137-RC | 846..936 | 714..804 | 185 | 80.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10982661..10983542 | 2545..1664 | 4410 | 100 | Minus |
| 2L | 23513712 | 2L | 10985544..10986129 | 685..100 | 2930 | 100 | Minus |
| 2L | 23513712 | 2L | 10985167..10985489 | 1006..684 | 1615 | 100 | Minus |
| 2L | 23513712 | 2L | 10984140..10984341 | 1363..1162 | 1010 | 100 | Minus |
| 2L | 23513712 | 2L | 10983896..10984087 | 1554..1363 | 960 | 100 | Minus |
| 2L | 23513712 | 2L | 10984945..10985100 | 1162..1007 | 780 | 100 | Minus |
| 2L | 23513712 | 2L | 10983666..10983776 | 1665..1555 | 555 | 100 | Minus |
| 2L | 23513712 | 2L | 10987249..10987332 | 100..17 | 420 | 100 | Minus |
| 2L | 23513712 | 2L | 10999988..11000078 | 804..714 | 185 | 80.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:49:27 has no hits.
BO22453.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:28 Download gff for
BO22453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| piwi-RA | 85..2613 | 17..2547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:10 Download gff for
BO22453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| piwi-RA | 89..2617 | 17..2547 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:46 Download gff for
BO22453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| piwi-RA | 89..2617 | 17..2547 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:46 Download gff for
BO22453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10982659..10983540 | 1666..2547 | 99 | <- | Minus |
| 2L | 10983666..10983776 | 1555..1665 | 100 | <- | Minus |
| 2L | 10983896..10984087 | 1363..1554 | 100 | <- | Minus |
| 2L | 10984141..10984341 | 1162..1362 | 100 | <- | Minus |
| 2L | 10984946..10985100 | 1007..1161 | 100 | <- | Minus |
| 2L | 10985167..10985487 | 686..1006 | 100 | <- | Minus |
| 2L | 10985544..10986128 | 101..685 | 100 | <- | Minus |
| 2L | 10987249..10987332 | 17..100 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:10 Download gff for
BO22453.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10982659..10983540 | 1666..2547 | 99 | <- | Minus |
| arm_2L | 10983666..10983776 | 1555..1665 | 100 | <- | Minus |
| arm_2L | 10983896..10984087 | 1363..1554 | 100 | <- | Minus |
| arm_2L | 10984141..10984341 | 1162..1362 | 100 | <- | Minus |
| arm_2L | 10984946..10985100 | 1007..1161 | 100 | <- | Minus |
| arm_2L | 10985167..10985487 | 686..1006 | 100 | <- | Minus |
| arm_2L | 10985544..10986128 | 101..685 | 100 | <- | Minus |
| arm_2L | 10987249..10987332 | 17..100 | 100 | | Minus |
BO22453.pep Sequence
Translation from 16 to 2563
> BO22453.pep
MADDQGRGRRRPLNEDDSSTSRGSGDGPRVKVFRGSSSGDPRADPRIEAS
RERRALEEAPRREGGPTERKPWGDQYDYLNTRPAELVSKKGTDGVPVMLQ
TNFFRLKTKPEWRIVHYHVEFEPSIENPRVRMGVLSNHANLLGSGYLFDG
LQLFTTRKFEQEITVLSGKSKLDIEYKISIKFVGFISCAEPRFLQVLNLI
LRRSMKGLNLELVGRNLFDPRAKIEIREFKMELWPGYETSIRQHEKDILL
GTEITHKVMRTETIYDIMRRCSHNPARHQDEVRVNVLDLIVLTDYNNRTY
RINDVDFGQTPKSTFSCKGRDISFVEYYLTKYNIRIRDHNQPLLISKNRD
KALKTNASELVVLIPELCRVTGLNAEMRSNFQLMRAMSSYTRMNPKQRTD
RLRAFNHRLQNTPESVKVLRDWNMELDKNVTEVQGRIIGQQNIVFHNGKV
PAGENADWQRHFRDQRMLTTPSDGLDRWAVIAPQRNSHELRTLLDSLYRA
ASGMGLRIRSPQEFIIYDDRTGTYVRAMDDCVRSDPKLILCLVPNDNAER
YSSIKKRGYVDRAVPTQVVTLKTTKNRSLMSIATKIAIQLNCKLGYTPWM
IELPLSGLMTIGFDIAKSTRDRKRAYGALIASMDLQQNSTYFSTVTECSA
FDVLANTLWPMIAKALRQYQHEHRKLPSRIVFYRDGVSSGSLKQLFEFEV
KDIIEKLKTEYARVQLSPPQLAYIVVTRSMNTRFFLNGQNPPPGTIVDDV
ITLPERYDFYLVSQQVRQGTVSPTSYNVLYSSMGLSPEKMQKLTYKMCHL
YYNWSGTTRVPAVCQYAKKLATLVGTNLHSIPQNALEKKFYYLASFLDH
BO22453.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| piwi-PB | 843 | CG6122-PB | 1..843 | 1..843 | 4396 | 100 | Plus |
| piwi-PA | 843 | CG6122-PA | 1..843 | 1..843 | 4396 | 100 | Plus |
| aub-PA | 866 | CG6137-PA | 38..866 | 12..843 | 1773 | 43.3 | Plus |
| aub-PC | 795 | CG6137-PC | 20..795 | 77..843 | 1767 | 45.1 | Plus |
| AGO3-PF | 867 | CG40300-PF | 122..867 | 91..843 | 1155 | 33.6 | Plus |
