BO22461.complete Sequence
3688 bp assembled on 2010-01-08
GenBank Submission: KX795363
> BO22461.complete
GAAGTTATCAGTCGACATGTTGTGCTTCGACTCGGAGAGGATGAACTGGT
ACTACCACGTCCTGGCCAGGCGTCCCTACCTGGTGGTCGTCTCCATTGCT
GTCTACTGTGTCGCTTGCATCATCGTGGCCCTCGTCCTGAACAAGCTGCC
GGACTTCAGTGATCCCACCTTGGGCTTCGAAACCCGCGGCACCAAAATTG
GAGAACGACTGACGGCCTGGTACAACCTGCTGCAAGAGACTGACCACCAT
GGTGCTCTTTTCTCAAATCCATCGGATCTGTGGGAGAGGAGACGGGTAGA
GCAGGGCTATGTGGAGACGAAGCTGCATCCGAATCACAGGCGACGCAAAA
ACAAGCACAAGAACAGAAACAAGAACAAGCGACGCAAGGAACAAAATCAA
AGCAGCCACGAGCATCACGATGTGGCGCAGAAGATGATGCAGTTCAAAAA
ACGGCTGAAGGCTACTAGTTCTCCCTCTCCAAATCTCGGCTTTGACACCT
GGATCGGGGACAGTGGAGTATTTCGCGACTACGAGATTACAAACGACAGC
GCTTCCTCCTCTTTGGAACCCACGCGACGCACTGAGCAAATCGAATATGG
CCACAACACCACCTCAGTGGACGAGGAAGAGCATCAGCAGCGGGTGCAGA
CCAAGAAGAGCACTTGGCGGCTCCTAAAGCAAGCCGCCACCTTGCCCACC
GACGGTTGGGCAGACATGCATCGTCGCCAACCCATCGAGGGATTCTTTTG
CGATTCATCGCCCCGGAAGGAGTACTCTCATTTTGTGGTCCAGCGGATCG
GTCCCAACGCCACCGATTCTCTATTTGATTTGAACGGACTGCTGGCCATG
TGTCAGTTGCAGGATCAGATTACCGAAGTCCCCAGCTACCGGGCATTTTG
CGAGCCGGAGATGCTTACCACCGAGTGCTGCCGGCCATGGTCACTGCCCA
ACTACGCCGCCATGCTGGCCAACAAAAGTTCCTGTTTCGACCTTACCACG
GAGGATGTTACTTCGCTGCACACGCTGCTCTTGGGCTGCTATGAGTACTT
CCATGACCTAAAGATGGACAACCACTGCAACGAAATACCGCATTGTCGTG
CTCCTGAAGAGTGCAAGCGGCTAAATATCGTCTTTAACGTCCTGAATTTT
CTCACCGACTTTAGTTTCATCAAGTCTAATGACTCGAATGTATACCTGAA
ATACGCCATGATTTTTATACCCGTGGCGCAATCCAACCGCTTGCTGCCAC
TGTTCCACGAATGGGAAGACGTGGAGCTGATCAACGAGCTTGTGGAAGTG
GTTGCGATGGACTTGGGCCTCGAAAACGAACTCTTTAACGAGCTGCTGCT
GACGGACGTGTGGCTAGTTTCGCTGGGAGGGACATTCGTCATGGCTAGCG
TGTGGTTGTACACGGGATCGGCATTCATCACCTTGATGTCCTGCGTAGCC
ATATGCTTTTCGCTAGGACTAGCGTACTTTTTTTACGCCATCGTGCTGGA
GTTTGAGTTCTTCCCCTATATGAACCTTCTGGCCGTGGTAGTAATAATTG
GCATTGGAGCAGACGACGTATTTCTGTTTCTTAAGATCTGGCACTGTGTG
CTGACCGAGAGGTTCAGCAATCGATGTACCTTGACCACTCAGTCCCAGAG
TGCTCTTCCCACCCTGGAGAACAGTGATCACACGGAGTCACTGGAAAACA
TAATGGCGCTGACTATGCGACATGCCGCTGCCTCCATGTTCGTTACCTCA
CTTACCACCGCCGGCGCCTTTTATGCCTCCTACAGCAGCTCTATAACAGC
TATAAAGTGCTTTGGGATTTTTGCGGGAACTGTCGTGGTGACCAACTACT
TACTAATGATAACTTGGTTGCCTGCATCGGTCTCCATCATGGAACGACTA
TTTGCCACAAGGATGTCCTGCCATCATCCGATGTCAATAAAGCTGATCCA
CGCCTGCAAGAAGTCAATTAACCGATTTTGTCAGATGTTTGAGGAGTGCA
TCACGAAAAGCATCATGAACTATGCCTATCTCTGGCTGCTGATCTTTGGG
GCTCTAGGCGCGTCCAGTGCCGTCATTGTGTTCTGGTATCCAGGACTTCA
GTTGCCGGAAAAATCACACTTCCAGCTCTTTGTGTCAAAGCATCCATTTG
AGGTTTACTCCAGTCTCAAGCAGCAGTTCTGGTTCGAGAAACCATTGCAG
GCGTACGAGAACTTCAAGATGCACATGCATTTCGTCTGGGGCGTTCAAGC
GGTGGACGACGGCGACTATACGAACCCCAACTCATACGGCCACCTGCACT
ATGACAATAATTTTAACGTATCCAGCAGGCCGGCACAACTCTGGATCCTT
GATTTTTGCCAGAGTGTGCGCCAGCAACCCTTTTACAAAGAGACTCTCGG
CATGCTGTTGCCCAATTGTTTCATTGAAAATCTTATCGACTATATGAAGC
GCAGATGCATCGATGATATGGACAGTACCAGGAAAGACCGTTCACCCTGC
TGTGACGCACAGTTTCCCTTTGAGCCGCACATATTTGAGTACTGCTTGCC
ACAAAGCATATCCAACATGTATGACACTACATTTTTCCGGCCCGGCGTGG
CAGGACCCAAGTTTGCAGAGGCTCCCCGACTGGAGACTGAGGATTACCTA
GGAATGAGTGGAAATGAGAGTGCAGAGTACAGCACCAACGGATCATTTAC
ACCGCTACTAGTCAAAGCCCTGGTCATCGAGTTCGAGTCCAACGTGGCCT
ACAGCACCATCTACGCAAATATTAGGCAGTTCTACGAGTCTGTAGAGCAC
TGGTTTCAGATGCAGTTAAAAACGGCACCGCCGGAACTTCAAGGAGGATG
GTTCACGAGCGACCTGAAATTTTACAATGTGCAGGACACCCTTTCGCACG
ACACCTTTGTTGCCATTTGTCTGGCCATGGCTGCATCACTTGCAGTGCTC
CTATGCTTCACCGTAAACATATTGATTTCCATCTACGCCGTACTAACCGT
GTCGCTAAGTATTTTTAACACCGTGGCTGTGCTCATCCTGCTCGGCTGGC
AGCTTAACATCTTGGAGAGCATTGCGGTGAGCACGGCTATCGGTCTGGCT
GTGGACTTTAGCCTACATTACGGTATTCACTACCGGATGTCCCCGGTTAA
GGAGAGATTGGCAGCCACACAGTTTGTACTATCCCGCATCATTGGACCCA
CAGTGATGGCGGCCACCACAACTGGTCTAGCTGGCGGAATCATGATGGCA
TCCAACATATTGCCCTACATACAGATTGGCGTCTTCCTGGTCGTTGTCAT
GATCGTTAGCTGGTTCTATGCCACTTTCTTTCTAATGAGTCTGCTTCGGG
TTGCCGGTCCTCAGCATGGTTTTCTGGAACTCAAGTGGCCGTTGTGGAGC
AAGCGAAGCAGTGGCAGCAGCAAGTTCTACGAGCGGAAACCCAGCCAAGT
GATCGCCAGCGAGCAGCTGCTGACCCCCACAAGCTCGGCCATCGTTGAGT
TGGCGAACTCGGAGACGCACGAACTGGAGTCCCTAAACTCCAACAGCCTG
ATCAAAACCATTTCGGGCATCGAAAGCGCCCACGCATTGTCCTCGCTGCC
GAGGGACTTCGAGCACTCATTCCAGACGATGCACGAGTGCAAATATCAAA
CGTATCCGTCTACATCCAATGCAAGCTTTCTAGACCAT
BO22461.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:49:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
disp-RA | 3657 | CG2019-PA | 1..3654 | 17..3670 | 18270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:49:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
disp-RA | 4884 | CG2019-RA | 401..4057 | 14..3670 | 18285 | 100 | Plus |
CG34287-RA | 951 | CG34287-RA | 789..881 | 1273..1181 | 465 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:49:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 5854343..5855352 | 1181..172 | 5050 | 100 | Minus |
3R | 32079331 | 3R | 5850890..5851874 | 3436..2452 | 4925 | 100 | Minus |
3R | 32079331 | 3R | 5852056..5852699 | 2454..1811 | 3205 | 99.8 | Minus |
3R | 32079331 | 3R | 5852766..5853309 | 1816..1273 | 2720 | 100 | Minus |
3R | 32079331 | 3R | 5850524..5850759 | 3670..3435 | 1180 | 100 | Minus |
3R | 32079331 | 3R | 5855752..5855911 | 173..14 | 800 | 100 | Minus |
3R | 32079331 | 3R | 5854120..5854212 | 1273..1181 | 465 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 02:49:23 has no hits.
BO22461.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:26 Download gff for
BO22461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
disp-RA | 409..4057 | 22..3672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:28:08 Download gff for
BO22461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
disp-RA | 409..4057 | 22..3672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:36:43 Download gff for
BO22461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
disp-RA | 409..4057 | 22..3672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:36:43 Download gff for
BO22461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 5850521..5850758 | 3436..3672 | 99 | <- | Minus |
3R | 5850891..5851871 | 2455..3435 | 100 | <- | Minus |
3R | 5852056..5852694 | 1816..2454 | 100 | <- | Minus |
3R | 5852767..5853309 | 1273..1815 | 100 | <- | Minus |
3R | 5854121..5854212 | 1181..1272 | 100 | <- | Minus |
3R | 5854344..5855351 | 173..1180 | 100 | <- | Minus |
3R | 5855753..5855903 | 22..172 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:28:08 Download gff for
BO22461.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 1676243..1676480 | 3436..3672 | 99 | <- | Minus |
arm_3R | 1676613..1677593 | 2455..3435 | 100 | <- | Minus |
arm_3R | 1677778..1678416 | 1816..2454 | 100 | <- | Minus |
arm_3R | 1678489..1679031 | 1273..1815 | 100 | <- | Minus |
arm_3R | 1679843..1679934 | 1181..1272 | 100 | <- | Minus |
arm_3R | 1680066..1681073 | 173..1180 | 100 | <- | Minus |
arm_3R | 1681475..1681625 | 22..172 | 100 | | Minus |
BO22461.pep Sequence
Translation from 16 to 3688
> BO22461.pep
MLCFDSERMNWYYHVLARRPYLVVVSIAVYCVACIIVALVLNKLPDFSDP
TLGFETRGTKIGERLTAWYNLLQETDHHGALFSNPSDLWERRRVEQGYVE
TKLHPNHRRRKNKHKNRNKNKRRKEQNQSSHEHHDVAQKMMQFKKRLKAT
SSPSPNLGFDTWIGDSGVFRDYEITNDSASSSLEPTRRTEQIEYGHNTTS
VDEEEHQQRVQTKKSTWRLLKQAATLPTDGWADMHRRQPIEGFFCDSSPR
KEYSHFVVQRIGPNATDSLFDLNGLLAMCQLQDQITEVPSYRAFCEPEML
TTECCRPWSLPNYAAMLANKSSCFDLTTEDVTSLHTLLLGCYEYFHDLKM
DNHCNEIPHCRAPEECKRLNIVFNVLNFLTDFSFIKSNDSNVYLKYAMIF
IPVAQSNRLLPLFHEWEDVELINELVEVVAMDLGLENELFNELLLTDVWL
VSLGGTFVMASVWLYTGSAFITLMSCVAICFSLGLAYFFYAIVLEFEFFP
YMNLLAVVVIIGIGADDVFLFLKIWHCVLTERFSNRCTLTTQSQSALPTL
ENSDHTESLENIMALTMRHAAASMFVTSLTTAGAFYASYSSSITAIKCFG
IFAGTVVVTNYLLMITWLPASVSIMERLFATRMSCHHPMSIKLIHACKKS
INRFCQMFEECITKSIMNYAYLWLLIFGALGASSAVIVFWYPGLQLPEKS
HFQLFVSKHPFEVYSSLKQQFWFEKPLQAYENFKMHMHFVWGVQAVDDGD
YTNPNSYGHLHYDNNFNVSSRPAQLWILDFCQSVRQQPFYKETLGMLLPN
CFIENLIDYMKRRCIDDMDSTRKDRSPCCDAQFPFEPHIFEYCLPQSISN
MYDTTFFRPGVAGPKFAEAPRLETEDYLGMSGNESAEYSTNGSFTPLLVK
ALVIEFESNVAYSTIYANIRQFYESVEHWFQMQLKTAPPELQGGWFTSDL
KFYNVQDTLSHDTFVAICLAMAASLAVLLCFTVNILISIYAVLTVSLSIF
NTVAVLILLGWQLNILESIAVSTAIGLAVDFSLHYGIHYRMSPVKERLAA
TQFVLSRIIGPTVMAATTTGLAGGIMMASNILPYIQIGVFLVVVMIVSWF
YATFFLMSLLRVAGPQHGFLELKWPLWSKRSSGSSKFYERKPSQVIASEQ
LLTPTSSAIVELANSETHELESLNSNSLIKTISGIESAHALSSLPRDFEH
SFQTMHECKYQTYPSTSNASFLDH
BO22461.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 03:04:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
disp-PA | 1218 | CG2019-PA | 1..1218 | 1..1218 | 6439 | 100 | Plus |