BO22502.complete Sequence
2665 bp assembled on 2010-02-17
GenBank Submission: KX797428
> BO22502.complete
GAAGTTATCAGTCGACATGGATAGTTTAATTACAATTGTTAACAAGCTGC
AAGATGCGTTCACATCGCTCGGCGTCCACATGCAACTGGATCTGCCGCAG
ATCGCGGTGGTCGGTGGCCAGTCAGCTGGCAAGAGTTCCGTTTTGGAGAA
CTTTGTGGGCAAAGATTTCTTGCCGCGCGGCTCTGGTATCGTAACTCGGA
GACCACTAATCTTGCAACTGATCAATGGAGTTACCGAATATGGCGAGTTC
CTTCACATTAAAGGCAAGAAGTTTTCCAGCTTCGATGAGATCAGAAAAGA
AATCGAAGATGAAACGGATCGTGTGACCGGTAGTAACAAAGGCATTTCAA
ACATTCCAATTAATTTGCGCGTCTACTCGCCGCACGTACTCAATTTAACC
CTGATCGATTTGCCAGGCCTGACAAAGGTGGCCATTGGCGATCAACCGGT
GGATATTGAGCAGCAAATTAAGCAGATGATATTCCAATTTATTCGCAAAG
AGACTTGTTTAATTTTGGCTGTGACCCCGGCCAATACGGATCTGGCCAAT
TCGGATGCCCTCAAGCTGGCCAAGGAGGTGGATCCACAGGGTGTGCGAAC
CATTGGCGTTATAACCAAGCTGGATCTGATGGACGAGGGCACCGATGCAC
GCGACATTCTGGAGAATAAGCTGCTTCCGCTGCGACGTGGCTATATTGGC
GTGGTGAATAGATCCCAAAAGGATATCGAGGGGCGCAAGGATATCCACCA
GGCATTGGCCGCCGAACGCAAGTTCTTCTTGAGCCATCCCTCCTATCGGC
ACATGGCCGACCGTCTCGGCACCCCCTACTTGCAGCGCGTGCTCAACCAA
CAACTAACCAATCACATCAGGGACACGTTACCTGGCCTGCGGGATAAGTT
GCAGAAGCAGATGCTCACTTTGGAGAAGGAGGTGGAGGAGTTTAAGCACT
TTCAGCCAGGCGATGCTAGCATCAAAACAAAAGCTATGCTCCAAATGATT
CAGCAGCTGCAATCAGACTTTGAGCGAACTATCGAGGGCAGCGGCTCAGC
TTTGGTGAACACAAACGAGCTCTCAGGTGGCGCCAAGATCAATCGCATTT
TCCATGAACGTCTGCGCTTTGAGATCGTAAAGATGGCTTGCGATGAAAAG
GAACTGCGACGAGAGATCTCATTTGCAATTCGAAATATCCATGGTATTCG
CGTTGGCCTCTTCACACCCGACATGGCGTTCGAGGCGATTGTCAAGCGGC
AGATAGCGCTGCTCAAGGAGCCGGTTATCAAGTGTGTCGATCTAGTCGTA
CAGGAACTTTCTGTGGTCGTGCGCATGTGCACAGCTAAAATGAGTCGATA
CCCACGTCTGCGTGAGGAGACCGAACGTATTATCACAACACATGTGCGCC
AACGCGAGCATAGCTGCAAGGAACAGATCCTGCTGCTTATTGACTTTGAG
CTGGCCTATATGAACACCAATCATGAGGACTTCATTGGCTTCGCCAACGC
TCAAAACAAATCAGAGAATGCCAACAAAACTGGCACTCGTCAACTGGGCA
ACCAAGTCATTCGCAAGGGTCACATGGTCATCCAGAACCTTGGAATCATG
AAAGGTGGATCGCGTCCGTATTGGTTTGTGCTGACATCCGAGAGTATCTC
CTGGTATAAGGACGAGGATGAGAAGGAGAAGAAATTTATGCTGCCGTTGG
ATGGTTTAAAATTGCGTGATATTGAACAGGGATTTATGTCAATGTCTAGA
CGTGTTACATTTGCTTTATTTAGTCCCGATGGACGTAATGTTTATAAGGA
CTACAAACAACTGGAGCTCTCGTGCGAGACTGTGGAGGATGTGGAGTCCT
GGAAAGCATCCTTCCTGCGAGCTGGTGTCTATCCCGAAAAGCAGGAGACT
CAGGAAAACGGCGATGAGTCGGCCAGCGAGGAGAGTTCCAGCGATCCACA
GCTGGAGCGGCAGGTCGAGACCATTCGTAATCTGGTTGATTCCTACATGA
AGATCGTTACGAAGACCACCCGTGACATGGTGCCCAAAGCAATTATGATG
CTGATCATCAACAATGCCAAGGACTTTATCAATGGCGAGCTGCTGGCACA
TCTTTACGCGTCCGGCGATCAGGCCCAGATGATGGAGGAGTCGGCTGAAT
CGGCAACACGGCGAGAGGAAATGCTGCGCATGTACCGTGCTTGCAAGGAT
GCATTACAGATAATAGGTGACGTATCAATGGCCACCGTGTCGTCGCCATT
GCCACCGCCGGTTAAGAACGATTGGCTGCCCAGCGGCTTGGACAACCCAC
GTCTTTCTCCTCCAAGTCCGGGTGGCGTTCGAGGAAAGCCAGGACCTCCC
GCACAGAGCTCCTTGGGTGGACGGAACCCACCATTGCCACCATCTACAGG
TCGCCCAGCGCCAGCGATTCCGAATCGCCCAGGAGGTGGGGCACCACCAC
TACCCGGCGGTCGTCCCGGAGGATCTCTTCCCCCACCAATGCTACCATCC
CGTGTGTCCGGAGCTGTCGGCGGCGCCATTGTCCAGCAATCGGGAGCCAA
TCGCTATGTGCCGGAGAGTATGCGTGGACAGGTGAACCAGGCGGTGGGCC
AGGCAGCCATCAATGAGTTGTCCAATGCCTTCAGTTCGCGATTCAAGGCA
AGCTTTCTAGACCAT
BO22502.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:15:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shi-RK | 2634 | CG18102-PK | 1..2631 | 17..2647 | 13155 | 100 | Plus |
| shi-RJ | 2634 | CG18102-PJ | 1..2631 | 17..2647 | 13155 | 100 | Plus |
| shi-RG | 2634 | CG18102-PG | 1..2631 | 17..2647 | 13155 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shi-RK | 3300 | CG18102-RK | 339..2969 | 17..2647 | 13155 | 100 | Plus |
| shi-RJ | 3380 | CG18102-RJ | 419..3049 | 17..2647 | 13155 | 100 | Plus |
| shi-RG | 3190 | CG18102-RG | 229..2859 | 17..2647 | 13155 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15894834..15895591 | 236..993 | 3790 | 100 | Plus |
| X | 23542271 | X | 15895845..15896074 | 1110..1339 | 1150 | 100 | Plus |
| X | 23542271 | X | 15901542..15901748 | 1917..2123 | 1035 | 100 | Plus |
| X | 23542271 | X | 15897100..15897296 | 1603..1799 | 985 | 100 | Plus |
| X | 23542271 | X | 15896147..15896304 | 1340..1497 | 790 | 100 | Plus |
| X | 23542271 | X | 15905774..15905921 | 2500..2647 | 740 | 100 | Plus |
| X | 23542271 | X | 15893005..15893150 | 17..162 | 730 | 100 | Plus |
| X | 23542271 | X | 15902187..15902332 | 2354..2499 | 730 | 100 | Plus |
| X | 23542271 | X | 15901976..15902117 | 2215..2356 | 710 | 100 | Plus |
| X | 23542271 | X | 15898953..15899074 | 1797..1918 | 610 | 100 | Plus |
| X | 23542271 | X | 15895662..15895778 | 994..1110 | 585 | 100 | Plus |
| X | 23542271 | X | 15896366..15896474 | 1498..1606 | 545 | 100 | Plus |
| X | 23542271 | X | 15901820..15901918 | 2120..2218 | 495 | 100 | Plus |
| X | 23542271 | X | 15894693..15894766 | 163..236 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:15:56 has no hits.
BO22502.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-17 09:38:16 Download gff for
BO22502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shi-RG | 229..2859 | 17..2649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:26 Download gff for
BO22502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shi-RG | 229..2859 | 17..2649 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:25 Download gff for
BO22502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| shi-RG | 229..2859 | 17..2649 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:25 Download gff for
BO22502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15898955..15899074 | 1799..1918 | 100 | -> | Plus |
| X | 15901978..15902117 | 2217..2356 | 100 | -> | Plus |
| X | 15902190..15902332 | 2357..2499 | 100 | -> | Plus |
| X | 15905774..15905921 | 2500..2649 | 98 | | Plus |
| X | 15901544..15901747 | 1919..2122 | 100 | -> | Plus |
| X | 15896366..15896472 | 1498..1604 | 100 | -> | Plus |
| X | 15901823..15901916 | 2123..2216 | 100 | -> | Plus |
| X | 15897102..15897295 | 1605..1798 | 100 | -> | Plus |
| X | 15893005..15893150 | 17..162 | 100 | -> | Plus |
| X | 15894693..15894766 | 163..236 | 100 | -> | Plus |
| X | 15894835..15895591 | 237..993 | 100 | -> | Plus |
| X | 15895662..15895778 | 994..1110 | 100 | -> | Plus |
| X | 15895846..15896074 | 1111..1339 | 100 | -> | Plus |
| X | 15896147..15896304 | 1340..1497 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:26 Download gff for
BO22502.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15796011..15796150 | 2217..2356 | 100 | -> | Plus |
| arm_X | 15796223..15796365 | 2357..2499 | 100 | -> | Plus |
| arm_X | 15799807..15799954 | 2500..2649 | 98 | | Plus |
| arm_X | 15795577..15795780 | 1919..2122 | 100 | -> | Plus |
| arm_X | 15787038..15787183 | 17..162 | 100 | -> | Plus |
| arm_X | 15788726..15788799 | 163..236 | 100 | -> | Plus |
| arm_X | 15788868..15789624 | 237..993 | 100 | -> | Plus |
| arm_X | 15789695..15789811 | 994..1110 | 100 | -> | Plus |
| arm_X | 15789879..15790107 | 1111..1339 | 100 | -> | Plus |
| arm_X | 15790180..15790337 | 1340..1497 | 100 | -> | Plus |
| arm_X | 15790399..15790505 | 1498..1604 | 100 | -> | Plus |
| arm_X | 15791135..15791328 | 1605..1798 | 100 | -> | Plus |
| arm_X | 15792988..15793107 | 1799..1918 | 100 | -> | Plus |
| arm_X | 15795856..15795949 | 2123..2216 | 100 | -> | Plus |
BO22502.pep Sequence
Translation from 16 to 2665
> BO22502.pep
MDSLITIVNKLQDAFTSLGVHMQLDLPQIAVVGGQSAGKSSVLENFVGKD
FLPRGSGIVTRRPLILQLINGVTEYGEFLHIKGKKFSSFDEIRKEIEDET
DRVTGSNKGISNIPINLRVYSPHVLNLTLIDLPGLTKVAIGDQPVDIEQQ
IKQMIFQFIRKETCLILAVTPANTDLANSDALKLAKEVDPQGVRTIGVIT
KLDLMDEGTDARDILENKLLPLRRGYIGVVNRSQKDIEGRKDIHQALAAE
RKFFLSHPSYRHMADRLGTPYLQRVLNQQLTNHIRDTLPGLRDKLQKQML
TLEKEVEEFKHFQPGDASIKTKAMLQMIQQLQSDFERTIEGSGSALVNTN
ELSGGAKINRIFHERLRFEIVKMACDEKELRREISFAIRNIHGIRVGLFT
PDMAFEAIVKRQIALLKEPVIKCVDLVVQELSVVVRMCTAKMSRYPRLRE
ETERIITTHVRQREHSCKEQILLLIDFELAYMNTNHEDFIGFANAQNKSE
NANKTGTRQLGNQVIRKGHMVIQNLGIMKGGSRPYWFVLTSESISWYKDE
DEKEKKFMLPLDGLKLRDIEQGFMSMSRRVTFALFSPDGRNVYKDYKQLE
LSCETVEDVESWKASFLRAGVYPEKQETQENGDESASEESSSDPQLERQV
ETIRNLVDSYMKIVTKTTRDMVPKAIMMLIINNAKDFINGELLAHLYASG
DQAQMMEESAESATRREEMLRMYRACKDALQIIGDVSMATVSSPLPPPVK
NDWLPSGLDNPRLSPPSPGGVRGKPGPPAQSSLGGRNPPLPPSTGRPAPA
IPNRPGGGAPPLPGGRPGGSLPPPMLPSRVSGAVGGAIVQQSGANRYVPE
SMRGQVNQAVGQAAINELSNAFSSRFKASFLDH
BO22502.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| shi-PK | 877 | CG18102-PK | 1..877 | 1..877 | 4485 | 100 | Plus |
| shi-PJ | 877 | CG18102-PJ | 1..877 | 1..877 | 4485 | 100 | Plus |
| shi-PG | 877 | CG18102-PG | 1..877 | 1..877 | 4485 | 100 | Plus |
| shi-PF | 877 | CG18102-PF | 1..877 | 1..877 | 4485 | 100 | Plus |
| shi-PP | 881 | CG18102-PP | 1..881 | 1..877 | 4470 | 99.5 | Plus |
