Clone BO22712 Report

Search the DGRC for BO22712

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:227
Well:12
Vector:pDNR-Dual
Associated Gene/TranscriptSmD1-RA
Protein status:BO22712.pep: Inserted from web
Sequenced Size:406

Clone Sequence Records

BO22712.complete Sequence

406 bp assembled on 2010-01-15

GenBank Submission: KX799281

> BO22712.complete
GAAGTTATCAGTCGACATGAAATTAGTAAGATTCCTTATGAAGCTAAGTC
ACGAGACCGTGACCATCGAACTGAAGAACGGCACCCAGATCCACGGCACC
ATTACCGGCGTGGATGTGGCCATGAACACTCACCTGAAGAGCGTTCGGAT
GACGATCAAGAACCGGGATCCCGTCCACCTGGAGACGCTGAGCATTCGCG
GCAACAACATCAGATACTTTATACTGCCGGACAGCCTGCCGCTGGAGACG
CTCCTCATCGACGACACCCCGAAGTCGAAGACAAAAAAGAAGGACAGCGG
CCGCGTGGGAAATCGCGGCAGGGGCAGAGGCGCCCGCGGACGAGGTGGTC
CACGGGGTCGCGGAAGGGGCCGAGCTTCAGGCCGACGTGCAAGCTTTCTA
GACCAT

BO22712.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:16:51
Subject Length Description Subject Range Query Range Score Percent Strand
SmD1-RA 375 CG10753-PA 1..372 17..388 1860 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:52
Subject Length Description Subject Range Query Range Score Percent Strand
SmD1-RA 729 CG10753-RA 94..467 15..388 1870 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:49
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 12733626..12733985 388..29 1800 100 Minus
Blast to na_te.dros performed on 2014-11-28 03:16:50 has no hits.

BO22712.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:58 Download gff for BO22712.complete
Subject Subject Range Query Range Percent Splice Strand
snRNP69D-RA 93..464 17..390 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:50 Download gff for BO22712.complete
Subject Subject Range Query Range Percent Splice Strand
SmD1-RA 96..467 17..390 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:45 Download gff for BO22712.complete
Subject Subject Range Query Range Percent Splice Strand
SmD1-RA 96..467 17..390 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:45 Download gff for BO22712.complete
Subject Subject Range Query Range Percent Splice Strand
3L 12733624..12733983 31..390 99 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:50 Download gff for BO22712.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 12726724..12727083 31..390 99 <- Minus

BO22712.pep Sequence

Translation from 16 to 406

> BO22712.pep
MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNR
DPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSGRVGNR
GRGRGARGRGGPRGRGRGRASGRRASFLDH

BO22712.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:01:11
Subject Length Description Subject Range Query Range Score Percent Strand
SmD1-PA 124 CG10753-PA 1..124 1..124 637 100 Plus
SmD3-PA 151 CG8427-PA 7..121 8..118 139 32.5 Plus