Clone BO22754 Report

Search the DGRC for BO22754

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:227
Well:54
Vector:pDNR-Dual
Associated Gene/TranscriptSip1-RA
Protein status:BO22754.pep: Imported from assembly
Sequenced Size:922

Clone Sequence Records

BO22754.complete Sequence

922 bp assembled on 2010-01-15

GenBank Submission: KX794760

> BO22754.complete
GAAGTTATCAGTCGACATGTCCACGCCCACTTCCCCGAAGACGCCCACAC
CGCCCACTTTGCCACCGGGCGTGACCAAAACATGTCACATTGTGAAAAGG
CCCGATTTCGATGGCTATGGTTTCAATTTGCATTCGGAGAAGGTGAAACC
AGGACAGTTTATTGGCAAAGTAGATGCGGATTCTCCGGCAGAGGCAGCCG
GCCTGAAGGAGGGCGATCGCATCCTGGAGGTCAACGGGGTGTCCATTGGC
AGCGAGACCCACAAGCAGGTGGTTGCCAGGATCAAGGCCATTGCGAATGA
AGTCCGCTTGCTGCTCATCGATGTGGATGGCAAGGCCTTGGAGGTGAAAC
CGGCATCTCCGCCAGCCGCTGCGTGCAATGGAAACGGTAGTGCCAGTCAG
AATGGATACGAGGGCACCAAACAGGAGATGCCCGGAGCAAGTGCCAATAT
CAGTAGCATCAGTATGGTGAGCACCAAGCGATCCTCAAATGCCAGCAGCA
TTCAGAGCGGCAGTACCATGAATGCCTCCGATTTGGATGTGGTCGATAGG
GGAATACCGGCAGTCGCTGCTCCGGTGGCTATCACCCCGCCTCCCGTTCA
AAATGGAAGTAAACCCTCATCGCCGATTAATAATAACACTTTGATGAGCA
CACCGCCACCGCCGTCCGCTACTAAGGCTGGCATCAACAACAATGGCAGT
GTTTATAACACCAATGGAAATGGTACAAATGGCATGACCACACCCACTAC
ACCACCCCCACCGACCAGTGGCTATAAGGCGGGCACCTTGCATTTACCAA
TGACGGCCGCCGAAATGCGCGCCAAATTGGCATCCAAGAAGAAGTACGAT
CCCAAGAACGAGAGTGTGGACCTCAAGAAGAAGTTCGACATCATTCAGAA
GCTCGCAAGCTTTCTAGACCAT

BO22754.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:41:11
Subject Length Description Subject Range Query Range Score Percent Strand
Sip1-RA 891 CG10939-PA 1..888 17..904 4440 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:41:12
Subject Length Description Subject Range Query Range Score Percent Strand
Sip1-RA 1717 CG10939-RA 436..1330 10..904 4445 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:41:08
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 17403890..17404784 10..904 4445 99.8 Plus
Blast to na_te.dros performed on 2014-11-28 02:41:09 has no hits.

BO22754.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:00 Download gff for BO22754.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 440..1327 17..906 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:25:01 Download gff for BO22754.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 443..1330 17..906 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:34:03 Download gff for BO22754.complete
Subject Subject Range Query Range Percent Splice Strand
Sip1-RA 443..1330 17..906 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:34:03 Download gff for BO22754.complete
Subject Subject Range Query Range Percent Splice Strand
2R 17403897..17404784 17..906 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:25:01 Download gff for BO22754.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2R 13291402..13292289 17..906 99   Plus

BO22754.pep Sequence

Translation from 16 to 922

> BO22754.pep
MSTPTSPKTPTPPTLPPGVTKTCHIVKRPDFDGYGFNLHSEKVKPGQFIG
KVDADSPAEAAGLKEGDRILEVNGVSIGSETHKQVVARIKAIANEVRLLL
IDVDGKALEVKPASPPAAACNGNGSASQNGYEGTKQEMPGASANISSISM
VSTKRSSNASSIQSGSTMNASDLDVVDRGIPAVAAPVAITPPPVQNGSKP
SSPINNNTLMSTPPPPSATKAGINNNGSVYNTNGNGTNGMTTPTTPPPPT
SGYKAGTLHLPMTAAEMRAKLASKKKYDPKNESVDLKKKFDIIQKLASFL
DH

BO22754.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:11:44
Subject Length Description Subject Range Query Range Score Percent Strand
Sip1-PA 296 CG10939-PA 1..296 1..296 1529 100 Plus