BO22763.complete Sequence
2824 bp assembled on 2010-02-17
GenBank Submission: KX799916
> BO22763.complete
GAAGTTATCAGTCGACATGCTGCGAATTGATAAAATACTTGTGGTTTCGC
GTGGGAAGGCGAGTTCCGTTGAAGTCGCAGCACTGCGTTACATAGCTGCA
TCTATTGCTACAGCCACGTTGGATTCTCAATCCCAAATAAAGGCGGTCTC
CAGTCCAACGCTGTCCGAGCCGTGCTTAGAGGAGCAGCCACAAAAAGGAA
CTGAAAGTACGGATGTGGCCAACACAGGCAGCAGCGCCGGAAGTGGAGGC
CTAGGCGTATTGCAGAAATTCAAACGCACCTTGAACAACTTTAACAACAA
AAATCAATTGCACATCTCTCCGCTATCACCAGCGGCAGTAGCACCTATGA
TAACGACGACCACAGCTAGCGATCCTGGCTCAGAGGCCGGCGATACGAGC
TCCGGAAAATACCGGTTTGGGCCCCTTATTTGGCGTTCTTCCAAAGAACG
CCGTAAGACGAAGTACAACCGACGCGACAAGTGTAATTCTGGTGATTCAG
GCATACAGATCGAACTAGAACAGGATGAGCAATACTCCCGTGCGACAATG
GCCGTGAGCCGCCAGGATGAGCCCCGCGCTTTTGCGTTAACCAATGGATC
GTGTGGTGTCGCGCTCTCTAAAATGCGAGCCATACGTCGCACCAACTCTG
CAAAGGCGAGCAGCATCCTTGGGCCCTTTATCGTTAAAACCAAAATAGCC
AAGCACTTAAACATTGGAGAGTCTGACAAAGCCGAGCGCAAAGCGCCCGA
GTCTCTACCCACGCGATCGCTTAGCCAACCGAACGGCCTAGAGTCCTACG
GTATGGGTCGTCCCGATCTTGAGGATAGCGACAGCGATAGTGTCGCGTCA
AACGAGGAAGCTATAAGCTTCTACCCAACTACCTATGCGGAGGTGCTTTA
CAACTTCACGGCCGGCGGTCCTCAAGAACTAGGGCTAGAGAGAGGAATGC
TTATTGAAATACTGCGCAAGGAAGTTGGACCCTGGTGGTTCGGCCGAATT
AAGAAGGAGGAAACCAATCTGGTGGAAGACATATTGGGTCCTGAGCTGGG
CTGGTTCCCCAAGGAGTTTGTGCGGATTATTCACTGTCCAGAGACGGACA
ATTTCTTTATAGCGCACAGGGCTGCCGCTGATGAGGCGGCGGCTGAGGAA
GCCACTGCTCGTGCAGAGGAAGGGTCTGTTCCTGTTCCCGTTGCGGCATT
TGCCGAGGACACAGACGTTACCGTCACCACAGACCAAAGCAACGTCACCC
TTATAGTCATTGAATCACCACCAACTCCGAGTGCACCCAGTGTGGACTTT
GTTGCCCAACCGGATCACAGCACGATCATACGCCGCAGTGCCGTTCGCGA
ACTGCTTGATACGGAGGTCAATTATGTAAAGCTGCTAGCAGCCATTTGTG
ATGGGTACCTGCCAGCTATGAGCAAGCGAATCGATATATTTTCGCCAAAC
AGTATTCGGCTTATCTTCTCCAACATAACGGCCATTTACAAGTTTCAGCG
AAAGTTTCTTGAAGCCTTACGACGAGGAATCGAGCAAAACCAAGTTGCCA
AAGTTTTCCTTAAAATGCACAAAGGTTTCCTTTGCTACTCCACCTATTGT
AACGCATACCCTCGAGCCCTGATAGAACTTGAGACCTACGATCGCGTAAA
AGACGCCCGTACAATTCTTGAGAACTGTCGCGAATCCCAAAACCTGGCCG
AGCTGCCCCTCTCTGCGCACCTGCTGGCACCTGTGCAACGAATCTGCCGC
TATCCCCTGCACCTCAACGAGATTATTAAGTCGGCATTGGAAAAGGGAGC
CAAGGAAGGGAACGATACAGACGGTGCGAAGTCAGCTGGCAAGACAACTG
ACTATGAGCAACTCGATGTTACTGAACTAGACATACCCGACTCTCAAGAT
ACTGTCAATTTGGCGCTGGAAGCGATGCGCGGCATCACAGAAGCAGTCAA
TGAGGGCAAGCGCCACAGCGAGACGATTGCAAGGCATCAAGCCAGCTTCC
AAAACTTTAAGGGCCCGCCGCTGCACTTGCATAGTGCTCGCTTCTTCCTG
CAAGTCGATGCCACGCGGCAGAAACAGAATCTGTGGAACAGCAGCTATAC
TCTGTTTCTTTTTGATAACCAGCTCGTTTACTGCAAGCGAGATATTATTA
AGCGGAGCCACTTCATCTACAAGGGACGCATTTTTCTCGATCGCTGTCGC
GTGGTAAACGTGAGGGATGGAAAAATGTTTGGGCACACCATTAAGAACTC
CCTACGCATATATAGCGAGTCTCGAGACAAATGGTACGATTTTAGTTTCC
GTTCGGCGAACCGCAAGCATCGCTTCCTAAGCACTCTCGCCCTGGAGCGC
CAGTTTGGTGGTAAAGCTCTATACGTATCAGAGATGACTGGATTCGAGTA
CAATTACGAGGAGCGGCCGGGCGATTACTCAGACCAATCAGATTACGATG
CTCAAGATTTTGAATTAGCAACTGGGGTCACCAGTGGTGAGAGCTCACTG
CCGGAGTCGCCGGCCAAATCTACGTCTCGCCTGTGTGAGACACTGCCAAA
AAAATCTCAGTCCAGGGACGGAATATCCAGCGCTGAAAACTCTCAAATAG
TCACTACCACATCGACAGGTTCGCTAGGAAGGCGGCATTTTGGCAATTGG
TTCCGCAAGCCAAAGAGCGCAAACTGCACTCCAAGTCAATCACCGACGCA
TAAGCCAAGCTTCGACGCAGACGCTACGCTCACGGAAGCCCGGGTTGCTG
CGATGGAACTGGCTGAAGCCGCGGCCGCACTAGTGCCAACGGACAGCTCC
TCAGCGGCAAGCTTTCTAGACCAT
BO22763.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:17:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-RE | 2793 | CG43976-PE | 1..2790 | 17..2806 | 13800 | 99.6 | Plus |
| RhoGEF3-RB | 2799 | CG43976-PB | 1..2796 | 17..2806 | 13705 | 99.4 | Plus |
| RhoGEF3-RM | 10557 | CG43976-PM | 8087..10554 | 339..2806 | 12190 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:17:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-RE | 3168 | CG43976-RE | 163..2952 | 17..2806 | 13800 | 99.6 | Plus |
| RhoGEF3-RB | 3086 | CG43976-RB | 163..2958 | 17..2806 | 13705 | 99.4 | Plus |
| RhoGEF3-RK | 3157 | CG43976-RK | 150..2941 | 17..2806 | 13610 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 302749..303880 | 1675..2806 | 5630 | 99.8 | Plus |
| 3L | 28110227 | 3L | 301756..302304 | 859..1407 | 2715 | 99.6 | Plus |
| 3L | 28110227 | 3L | 301160..301681 | 339..860 | 2580 | 99.6 | Plus |
| 3L | 28110227 | 3L | 300901..301108 | 134..341 | 1040 | 100 | Plus |
| 3L | 28110227 | 3L | 302361..302522 | 1406..1567 | 765 | 98.1 | Plus |
| 3L | 28110227 | 3L | 300732..300848 | 17..133 | 585 | 100 | Plus |
| 3L | 28110227 | 3L | 302584..302691 | 1567..1674 | 540 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:16:59 has no hits.
BO22763.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-17 09:38:21 Download gff for
BO22763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RE | 163..2952 | 17..2808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:55 Download gff for
BO22763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RE | 163..2952 | 17..2808 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:50 Download gff for
BO22763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RhoGEF3-RE | 163..2952 | 17..2808 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:50 Download gff for
BO22763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 300732..300848 | 17..133 | 100 | -> | Plus |
| 3L | 300901..301108 | 134..341 | 100 | -> | Plus |
| 3L | 301163..301681 | 342..860 | 99 | -> | Plus |
| 3L | 301758..302301 | 861..1404 | 99 | -> | Plus |
| 3L | 302360..302522 | 1405..1567 | 97 | -> | Plus |
| 3L | 302585..302691 | 1568..1674 | 100 | -> | Plus |
| 3L | 302749..303880 | 1675..2808 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:55 Download gff for
BO22763.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 300732..300848 | 17..133 | 100 | -> | Plus |
| arm_3L | 300901..301108 | 134..341 | 100 | -> | Plus |
| arm_3L | 301163..301681 | 342..860 | 99 | -> | Plus |
| arm_3L | 301758..302301 | 861..1404 | 99 | -> | Plus |
| arm_3L | 302360..302522 | 1405..1567 | 97 | -> | Plus |
| arm_3L | 302585..302691 | 1568..1674 | 100 | -> | Plus |
| arm_3L | 302749..303880 | 1675..2808 | 99 | | Plus |
BO22763.pep Sequence
Translation from 16 to 2824
> BO22763.pep
MLRIDKILVVSRGKASSVEVAALRYIAASIATATLDSQSQIKAVSSPTLS
EPCLEEQPQKGTESTDVANTGSSAGSGGLGVLQKFKRTLNNFNNKNQLHI
SPLSPAAVAPMITTTTASDPGSEAGDTSSGKYRFGPLIWRSSKERRKTKY
NRRDKCNSGDSGIQIELEQDEQYSRATMAVSRQDEPRAFALTNGSCGVAL
SKMRAIRRTNSAKASSILGPFIVKTKIAKHLNIGESDKAERKAPESLPTR
SLSQPNGLESYGMGRPDLEDSDSDSVASNEEAISFYPTTYAEVLYNFTAG
GPQELGLERGMLIEILRKEVGPWWFGRIKKEETNLVEDILGPELGWFPKE
FVRIIHCPETDNFFIAHRAAADEAAAEEATARAEEGSVPVPVAAFAEDTD
VTVTTDQSNVTLIVIESPPTPSAPSVDFVAQPDHSTIIRRSAVRELLDTE
VNYVKLLAAICDGYLPAMSKRIDIFSPNSIRLIFSNITAIYKFQRKFLEA
LRRGIEQNQVAKVFLKMHKGFLCYSTYCNAYPRALIELETYDRVKDARTI
LENCRESQNLAELPLSAHLLAPVQRICRYPLHLNEIIKSALEKGAKEGND
TDGAKSAGKTTDYEQLDVTELDIPDSQDTVNLALEAMRGITEAVNEGKRH
SETIARHQASFQNFKGPPLHLHSARFFLQVDATRQKQNLWNSSYTLFLFD
NQLVYCKRDIIKRSHFIYKGRIFLDRCRVVNVRDGKMFGHTIKNSLRIYS
ESRDKWYDFSFRSANRKHRFLSTLALERQFGGKALYVSEMTGFEYNYEER
PGDYSDQSDYDAQDFELATGVTSGESSLPESPAKSTSRLCETLPKKSQSR
DGISSAENSQIVTTTSTGSLGRRHFGNWFRKPKSANCTPSQSPTHKPSFD
ADATLTEARVAAMELAEAAAALVPTDSSSAASFLDH
BO22763.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RhoGEF3-PE | 930 | CG43976-PE | 1..930 | 1..930 | 4766 | 100 | Plus |
| RhoGEF3-PB | 932 | CG43976-PB | 1..932 | 1..930 | 4753 | 99.8 | Plus |
| RhoGEF3-PC | 925 | CG43976-PC | 1..925 | 1..930 | 4594 | 95.5 | Plus |
| RhoGEF3-PM | 3518 | CG43976-PM | 2580..3518 | 1..930 | 4566 | 94.9 | Plus |
| RhoGEF3-PL | 3519 | CG43976-PL | 2581..3519 | 1..930 | 4566 | 94.9 | Plus |
