BO22768.complete Sequence
3637 bp assembled on 2010-10-26
GenBank Submission: KX799651
> BO22768.complete
GAAGTTATCAGTCGACATGGAAATACCCATTCAGGTAGCGGTGCGCATCT
TCCCGCATAGAGAGCTCAAGGACTTGTTGAGGAGCTTCGGCCCCACAGAG
CCCAAAAAGGATGCGCAGGCGGTGGATGAGGGGGCGGACTCCAAGGACTC
CGAGGCTCAAGTTCCGGCGGCTGAGAAGGACAATCCGTCAATTTCAGAGA
CGGACCCAAACGGGAATGCTGAGCAGGACAGTGCGGCCGATTCGAAGACA
ATTCCAGATGCCAATGGCAACGACAGTGGTCAGAAGGATTACCCAGACTC
CGCATATTGCGTTCAGGCTATTCCCATCAGCGCTTCGGCCCTGGGATTGC
CCAGTGCCCTGCCAGGCGGAGATCCCATGGACAGCATTGCAGCTGGACTG
ATACAAGTCGGTCCCCACACGGTTCCGGTCACCCACGCCCTGCCCAGCAG
CAGCTCCCAGGAGCAAGTGTACCACCAGACGGTCTTTCCGCTCATCACCC
TGTTCCTGGAAGGTTTCGACGCATCTGTAGTCACCTATGGCCAGAGGGGC
CAGGGCAAAAGCTACACACTCTACGGAAACGTCCAGGACCCTACTCTGAC
GGATTCCACCGAAGGAGTCGTCCAACTTTGTGTCCGTGACATTTTCTCAC
ACATATCGTTGCACCCAGAACGCACCTATGCCATCAACGTGGGATTCGTG
GAAATTTGCGGAGGTGATGTCTGCGACTTGTTGGGCATGGGAAACATACA
CTGCACCAACGTAGATGCCGTCTTCCACTGGTTGCAGGTGGGTCTGTCGG
CCCGCCAATCGTTGCCGGCGCACACCCTGTTCACGCTTACCCTGGAGCAG
CAGTGGGTGTCCAAGGAGGGGCTGTTGCAGCACCGCTTGTCCACGGCCAG
TTTCTCGGATCTCTGCGGCACAGAGAGATGTGGAGACCAGCCACCGGGAC
GTCCTCTCGATGCTGGCCTGTGTATGCTGGAGCAGGTGATCAGTACTCTC
ACAGATCCAGGCCTCATGTACGGGGTTAATGGCAACATTCCGTACGGTCA
GACCACGCTCACCACTCTCCTGAAGGACTCGTTCGGCGGACGGGCTCAGA
CGCTCGTGATCCTGTGCGTGTCACCGCTGGAAGAGCACTTGCCCGAAACT
CTTGGCAACCTGCAGTTCGCCTTTAAGGTGCAGTGCGTACGTAATTTTGT
AATTATGAACACCTACTCCGACGACAACACGATGATCGTTCAGCCGGCTG
AGCCTGTTCCCGAATCCAATTCCTCTGCTGGACCCTTGTCGCAGGCGGGA
CCAGGGGACAACTTTGGCCTACAATTCGCAGCAAGCCAATGGTCCAAACT
AGTTACCAACGCCGAGGGGCTATTTTCCAAGCTGATAGACTCCAAGCTAA
TTACTGAAGTGGAGAAGGAGCAGATCGAGGAGTGGCTCTTCCTCAAGCAG
GAGTGCGAGGAGTGTCTCAGCTCAACAGAGGCTATGCGTCAGCAAAAACA
GTTGGTTCCCATTCTGGAGGCCGAGGAGCCCGAGGACGTGAATTCTGAAG
CAGCCAATTCGGAGTCGCCAAACTCCGACAACGAAAACGACACAGACAAT
GAGTCGCATCGGCCCGATCTGGACGACAAGATAGAAAGTCTAATGGAAGA
GTTTCGCGACAAAACAGACGCTCTTATACTTGAAAAACACGCTGAATATC
TATCCAAGCATCCGAAGGCGGTTATGCAAAGCCAAGACCGCGAGATTGAG
GCACAGCCGCCAGAAGAAAATGGTGATGATCGAAAAGTCAGCATTGGCAG
TCGCAGGAGAAGTGTTCAGCCAGGTGCTAGCTTAAGTACTGCTGAGCTTG
CCATGCTTAATCGGGTAGCTTCCCAGCAGCCGCCTCCGCCCATCGATCCT
GAGTCGGTCGTCGATCCTCTGGAAAGTTCTTCGGGCGAAGGAATCCGTCA
GGCGGCTCTCGCTGCCGCCGCCGCCACTGCTCCTATTGAACAGCTGCAGA
AAAAATTGCGCAAACTGGTCGCTGAGATCGAGGGCAAGCAACGACAGTTA
CGGGAAATCGAAGAGACAATCCAGGTAAAACAAAATATAATCGCCGAATT
GGTCAAGAACAGCGATACACGCAGCCATGCAAAGCAAAGATTTCACAAGA
AACGTGCCAAACTTGAGGCCGAGTGCGACAAGGCCAAGAAGCAGTTAGGT
AAGGCGCTAGTTCAAGGCCGGGATCAGTCGGAGATTGAGCGATGGACCAC
GATAATCGGACATCTCGAGCGTCGACTAGAAGACCTCAGCTCAATGAAGC
ATATTGCGGGTGAGAGCGGACAGAAGGTGAAGAAGCTACAGCAATCGGTG
GGCGAGTCGCGAAAACAGGCCGATGATTTACAGAAAAAGCTTCGAAAGGA
GTGCAAGCTGCGCTGCCAGATGGAGGCGGAGCTGGCCAAACTACGAGAAT
CCAGGGAGACTGGCAAAGAGCTAGTGAAGGCGCAAGGTTCTCCCGAGCAA
CAAGGCCGCCAGTTAAAGGCAGTACAGGCTAGGATTACGCACCTTAATCA
CATTTTACGCGAGAAGTCGGATAACCTGGAGGAGCAGCCGGGACCAGAAC
AGCAGGAGACCTTGCGTCATGAGATCCGCAACTTGCGCGGAACTCGTGAC
TTGTTGTTGGAAGAACGCTGTCATTTGGACCGCAAACTTAAGCGGGACAA
GGTGCTGACGCAAAAGGAGGAGCGCAAGCTGCTCGAGTGCGATGAGGCCA
TCGAGGCCATAGATGCGGCCATAGAATTCAAGAACGAGATGATCACGGGC
CACCGCTCCATCGACACGAGCGACCGAATTCAGCGGGAGAAGGGAGAACA
GATGCTGATGGCACGCCTAAATCGTCTCTCAACGGAGGAGATGCGAACAC
TTCTGTACAAATACTTCACGAAGGTTATCGATTTGCGCGACTCTTCACGA
AAGCTGGAGCTGCAGCTGGTGCAGTTGGAGCGTGAGCGGGATGCCTGGGA
GTGGAAGGAGCGTGTTCTGTCCAATGCCGTGCGCCAGGCTAGACTGGAAG
GCGAACGGAATGCGGTGCTGCTGCAGCGCCAGCACGAAATGAAACTCACT
TTGATGCTGCGTCACATGGCGGAGGAAACGTCGGCCAGTTCGGCCAGCTA
CGGAGAACGAGCTTTGGCCCCTGCCTGTGTCGCCCCGCCGGTGCAGGCCA
GTAGTGATTTCGACTACGATCATTTCTACAAAGGTGGCGGCAATCCAAGC
AAGGCACTGATCAAAGCGCCAAAGCCGATGCCCACCGGCTCGGCGCTAGA
CAAATACAAGGACAAAGAGCAACGCAGCGGACGCAACATCTTTGCCAAGT
TCCATGTGCTCACCAGATATGCGTCAGCTGCCGCAGCCGGTTCCTCAGGG
TCCACGGCCGAGGAATCCACGGCCCTGATTGAGTCAACCACCACGGCCAC
GGCAACCACTACGTCGACAACCACCACTGGAGCCGTAGGAAAAGTGAAGG
ACAAGGCCCTGGTCAGCTTCAGGCCGGAGCAGCTGAAGCGTCTGATGCCA
GCTCCGACGGCCACGAAAGTGACGCGTCAGAAGAACAAGATAATTATCCA
GGACGCAAGTCGTCGAAACGCAAGCTTTCTAGACCAT
BO22768.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:30:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cos-RB | 3606 | CG1708-PB | 1..3603 | 17..3619 | 18015 | 100 | Plus |
| cos-RA | 3606 | CG1708-PA | 1..3603 | 17..3619 | 18015 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:30:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cos-RB | 4416 | CG1708-RB | 136..3739 | 16..3619 | 18020 | 100 | Plus |
| cos-RA | 4763 | CG1708-RA | 136..3739 | 16..3619 | 18020 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:30:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 7383200..7385019 | 3619..1800 | 9100 | 100 | Minus |
| 2R | 25286936 | 2R | 7385557..7386271 | 1381..667 | 3575 | 100 | Minus |
| 2R | 25286936 | 2R | 7386328..7386980 | 668..16 | 3265 | 100 | Minus |
| 2R | 25286936 | 2R | 7385081..7385501 | 1801..1381 | 2105 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:30:56 has no hits.
BO22768.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-26 17:34:10 Download gff for
BO22768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cos-RA | 134..3736 | 17..3621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:32:26 Download gff for
BO22768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cos-RA | 137..3739 | 17..3621 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:14:44 Download gff for
BO22768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cos-RA | 137..3739 | 17..3621 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:14:44 Download gff for
BO22768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 7383198..7385019 | 1800..3621 | 99 | <- | Minus |
| 2R | 7385083..7385501 | 1381..1799 | 100 | <- | Minus |
| 2R | 7385558..7386269 | 669..1380 | 100 | <- | Minus |
| 2R | 7386328..7386979 | 17..668 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:32:26 Download gff for
BO22768.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 3270703..3272524 | 1800..3621 | 99 | <- | Minus |
| arm_2R | 3272588..3273006 | 1381..1799 | 100 | <- | Minus |
| arm_2R | 3273063..3273774 | 669..1380 | 100 | <- | Minus |
| arm_2R | 3273833..3274484 | 17..668 | 100 | | Minus |
BO22768.pep Sequence
Translation from 16 to 3637
> BO22768.pep
MEIPIQVAVRIFPHRELKDLLRSFGPTEPKKDAQAVDEGADSKDSEAQVP
AAEKDNPSISETDPNGNAEQDSAADSKTIPDANGNDSGQKDYPDSAYCVQ
AIPISASALGLPSALPGGDPMDSIAAGLIQVGPHTVPVTHALPSSSSQEQ
VYHQTVFPLITLFLEGFDASVVTYGQRGQGKSYTLYGNVQDPTLTDSTEG
VVQLCVRDIFSHISLHPERTYAINVGFVEICGGDVCDLLGMGNIHCTNVD
AVFHWLQVGLSARQSLPAHTLFTLTLEQQWVSKEGLLQHRLSTASFSDLC
GTERCGDQPPGRPLDAGLCMLEQVISTLTDPGLMYGVNGNIPYGQTTLTT
LLKDSFGGRAQTLVILCVSPLEEHLPETLGNLQFAFKVQCVRNFVIMNTY
SDDNTMIVQPAEPVPESNSSAGPLSQAGPGDNFGLQFAASQWSKLVTNAE
GLFSKLIDSKLITEVEKEQIEEWLFLKQECEECLSSTEAMRQQKQLVPIL
EAEEPEDVNSEAANSESPNSDNENDTDNESHRPDLDDKIESLMEEFRDKT
DALILEKHAEYLSKHPKAVMQSQDREIEAQPPEENGDDRKVSIGSRRRSV
QPGASLSTAELAMLNRVASQQPPPPIDPESVVDPLESSSGEGIRQAALAA
AAATAPIEQLQKKLRKLVAEIEGKQRQLREIEETIQVKQNIIAELVKNSD
TRSHAKQRFHKKRAKLEAECDKAKKQLGKALVQGRDQSEIERWTTIIGHL
ERRLEDLSSMKHIAGESGQKVKKLQQSVGESRKQADDLQKKLRKECKLRC
QMEAELAKLRESRETGKELVKAQGSPEQQGRQLKAVQARITHLNHILREK
SDNLEEQPGPEQQETLRHEIRNLRGTRDLLLEERCHLDRKLKRDKVLTQK
EERKLLECDEAIEAIDAAIEFKNEMITGHRSIDTSDRIQREKGEQMLMAR
LNRLSTEEMRTLLYKYFTKVIDLRDSSRKLELQLVQLERERDAWEWKERV
LSNAVRQARLEGERNAVLLQRQHEMKLTLMLRHMAEETSASSASYGERAL
APACVAPPVQASSDFDYDHFYKGGGNPSKALIKAPKPMPTGSALDKYKDK
EQRSGRNIFAKFHVLTRYASAAAAGSSGSTAEESTALIESTTTATATTTS
TTTTGAVGKVKDKALVSFRPEQLKRLMPAPTATKVTRQKNKIIIQDASRR
NASFLDH
BO22768.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:44:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cos-PB | 1201 | CG1708-PB | 1..1201 | 1..1201 | 6124 | 100 | Plus |
| cos-PA | 1201 | CG1708-PA | 1..1201 | 1..1201 | 6124 | 100 | Plus |
| Khc-PA | 975 | CG7765-PA | 62..844 | 145..992 | 321 | 19.8 | Plus |
| Klp61F-PA | 1066 | CG9191-PA | 45..797 | 131..816 | 288 | 22.2 | Plus |
| Klp31E-PC | 1048 | CG5300-PC | 57..900 | 140..966 | 277 | 21.5 | Plus |
