BO22771.complete Sequence
2482 bp assembled on 2010-08-02
GenBank Submission: KX793980
> BO22771.complete
GAAGTTATCAGTCGACATGTTCTCCAGAAAGAAGCCAGAGCCAGCGAAAA
GAAGGCAACACGATTTATCGCAGTTCGGTCTTACGGAAATCCCAGATGAT
TTTGATCCCAGCGCTGGATATGGTGAGGACGATGGGGGTGACAGTGATTT
GGAGGCAGAGCTTGCGGCCATAACCGGCGGAGAAGGAGCCAAGCCAAAGC
CCAAGCCCAAAGCAAAGCTGTTACCCGCCAGTGATTTGGACAAAATGATA
GCCGACAGCTTGCGTGATGTCAGCGACGATGATGATGATGACAATTTGGA
AAGCGATCCGGATCTTCTTGGCGAGCTGAGCGGAATCGGTGGTCTAGAGG
AGGCAGAGGAAGAGGAGCCTGTCGCACAACCGCCAGCTGCCTCTGAGGAA
CCCGTCCAGACCTTTCTGCCCACGACGACTGTGGACACATTAAGCATTAT
CAAACAGCGCCTGGAAATGTACAAGCAGGCCGAGGCCAATGCCAAGACTG
CCGGCGATTCTGGCAAAGCAAGGCGATTTGGAAGAGGCCTTAAGACTCTG
AAAGATCTGCACAGGCAGGCAGCGGCTGGCAAGTCCATTAACGTGGATGA
CATTCCACCTGAAGTCAGTGTAAAGCCAATTGGCGGGCAGGCTCCTCCAG
TGCCTGCAGAGGAGTCACCAGCTCCTTCCACACCTGCTTCCCCTCCGCCT
GTGCCTAGTCGTGCAGCTCCAGATCCACCAACCCCCGGCACCCCCGTGGA
GCCCACTACATCTGTGGCTCCCACATCTCCCCCTAATCCTCTTGTGACGC
AAATGCGCAGCCGCCAGACGGACTACAAAGCTGCTGCACTGCAATCTAAG
CGCAGTGGTGACATATCTACTGCCCTTCAGTTTCTCAAAGTGGTCAAGCA
ATTTGACGTAGTTATAAAAATGTGTGAAGACGGACAGGAAGTTGATTTGA
GTGACATGCCCCCTCCACCAGCTGAGTTTCTTGAATTCCTTAAAAAAATG
CAAGAAGAAGCAGCCGCAGAAGCTGTCGCAGAACCTACTGCTGCCCCAGA
ACCCACACCTGTTGCTCCTGCTCCTGTTCTAGCAGCTGCAACAAATATGT
TGGAGGCTCTGCAGCAACGTTTAGAGAAATATCAATCTGTAGAAGCGGCA
GCCAAGGCAGAAAACAATAGCGGAAAAGCAAGACGCTTTGGAAGGATTGT
GAAGCAATACGAAGATGCCATAAAGTTGTACAAGGCAGGCAAACCAGTGC
CTTACGATGAGCTGCCTGTGCCACCAGGTTTTGGACCGCTGCCTACGGCT
GATGCTGCTCCTGTCGCGCCGACACCGTCGCTGCCCACTTCGCCTACATC
TCCACCGCCAACAGCAAGTACTTCCGCAGGAGGAACACCCTCCAGTTCCA
GTGCGACGACACCTACAGCTCCTCGAAAAGCACCTTCACCTCCTAAGCCC
AAAGAGTTAACAACACGCACGTCTGGCAATCAGCAGAAGAATAATATTGC
CGAGCAACAAATGAAACTGCTCCTCGAGCGCCAAAAGGAGTTTAAGCTAG
CTGCTATAGAGGCCAAAAAAGCGGGAGAAATAGATCAGGCGAAGGAGTAC
CTCAAGATCTTCAAGGGATTCGATTCCCTTCTTAATGCAGCGAGTAGTGG
ATTGCCAGTGGACCTCAGCACTCTTCCCGTCCCGCCTTCACAAAGGGATA
ATCTAGAAGCCTCCTTTGCCATTGTATCTGCTGAGGAATGCGATCCGACA
GATGATATCTGTGAAATTGGTGTTCGCATGGAGGAGCAGCTGGCAAAACA
ACTGATGATGTGCAAAAATACGCGAGATCATCACAAAGCTATGGGAGATG
TAGCAGGCATGAATCGGTTTGAAAATTTAGCCTTAACTGTGCAAAAGGAT
TTGGATTTGGTGCGATACTCGAAACGAAAGAATGAACCACTGCCAAAGTT
TCACTATGAAAAGCGTAGCTTCAACATTGTGCATTGCAACACAGATCTCA
CAGACAGTGAGCTTGAAATTGTTGTGGTCCGGGGAATCAGCTACAATGTG
GCCAATCCCAAGGACGTGGATACTTATGTGCGCGTAGAGTTTCCCCTGCT
CAATGATGAATCTTTCAAGACTAAAACCAATGTTATCAGAGACACCAGCA
GTCCTGACTACGATGAACGCTTCAAGGTTGACATCCAGCGGACCAATCGT
CAGTTCCAGAGAATCTTTAAGCGGCATGGCGTCAAGTTTGAAATATACTC
TAGAGGAGGTTTTCTGCGATCGGATACGTTGATCGGAACCGTAAATGTCA
AGCTGCAGCCATTGGAGACCAAGTGCGAGATACACGACACATATGATCTA
ATGGATGGTCGCAAGCAAGTAGGTGGAAAATTGGAAGTCAAGATACGCGT
TCGCAATCCTATTCTCACCAAGCAAATGGAGCACATCACCGAAAAGTGGT
TGGTCTTGGATGCCGCAAGCTTTCTAGACCAT
BO22771.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:40:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)gd1-RA | 2451 | CG4713-PA | 1..2448 | 17..2464 | 12240 | 100 | Plus |
| l(2)gd1-RB | 2505 | CG4713-PB | 1..2240 | 17..2256 | 11200 | 100 | Plus |
| l(2)gd1-RB | 2505 | CG4713-PB | 2294..2502 | 2256..2464 | 1045 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:40:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)gd1-RA | 2989 | CG4713-RA | 123..2570 | 17..2464 | 12240 | 100 | Plus |
| l(2)gd1-RB | 3043 | CG4713-RB | 123..2362 | 17..2256 | 11200 | 100 | Plus |
| l(2)gd1-RB | 3043 | CG4713-RB | 2416..2624 | 2256..2464 | 1045 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11107207..11108807 | 72..1672 | 8005 | 100 | Plus |
| 2L | 23513712 | 2L | 11108866..11109298 | 1673..2105 | 2165 | 100 | Plus |
| 2L | 23513712 | 2L | 11109356..11109507 | 2105..2256 | 760 | 100 | Plus |
| 2L | 23513712 | 2L | 11110316..11110432 | 2348..2464 | 585 | 100 | Plus |
| 2L | 23513712 | 2L | 11110158..11110253 | 2256..2351 | 465 | 99 | Plus |
| 2L | 23513712 | 2L | 11107065..11107121 | 17..73 | 285 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 08:40:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy4 | 6852 | gypsy4 GYPSY4 6852bp | 6335..6381 | 1135..1089 | 118 | 72.3 | Minus |
BO22771.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 10:19:20 Download gff for
BO22771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gd1-RA | 119..2561 | 22..2466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:31 Download gff for
BO22771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gd1-RA | 128..2570 | 22..2466 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:39 Download gff for
BO22771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)gd1-RA | 128..2570 | 22..2466 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:39 Download gff for
BO22771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11107070..11107121 | 22..73 | 100 | -> | Plus |
| 2L | 11107209..11108807 | 74..1672 | 100 | -> | Plus |
| 2L | 11108866..11109297 | 1673..2104 | 100 | -> | Plus |
| 2L | 11109356..11109507 | 2105..2256 | 100 | -> | Plus |
| 2L | 11110159..11110249 | 2257..2347 | 100 | -> | Plus |
| 2L | 11110316..11110432 | 2348..2466 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:31 Download gff for
BO22771.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11107070..11107121 | 22..73 | 100 | -> | Plus |
| arm_2L | 11107209..11108807 | 74..1672 | 100 | -> | Plus |
| arm_2L | 11108866..11109297 | 1673..2104 | 100 | -> | Plus |
| arm_2L | 11109356..11109507 | 2105..2256 | 100 | -> | Plus |
| arm_2L | 11110159..11110249 | 2257..2347 | 100 | -> | Plus |
| arm_2L | 11110316..11110432 | 2348..2466 | 98 | | Plus |
BO22771.pep Sequence
Translation from 16 to 2482
> BO22771.pep
MFSRKKPEPAKRRQHDLSQFGLTEIPDDFDPSAGYGEDDGGDSDLEAELA
AITGGEGAKPKPKPKAKLLPASDLDKMIADSLRDVSDDDDDDNLESDPDL
LGELSGIGGLEEAEEEEPVAQPPAASEEPVQTFLPTTTVDTLSIIKQRLE
MYKQAEANAKTAGDSGKARRFGRGLKTLKDLHRQAAAGKSINVDDIPPEV
SVKPIGGQAPPVPAEESPAPSTPASPPPVPSRAAPDPPTPGTPVEPTTSV
APTSPPNPLVTQMRSRQTDYKAAALQSKRSGDISTALQFLKVVKQFDVVI
KMCEDGQEVDLSDMPPPPAEFLEFLKKMQEEAAAEAVAEPTAAPEPTPVA
PAPVLAAATNMLEALQQRLEKYQSVEAAAKAENNSGKARRFGRIVKQYED
AIKLYKAGKPVPYDELPVPPGFGPLPTADAAPVAPTPSLPTSPTSPPPTA
STSAGGTPSSSSATTPTAPRKAPSPPKPKELTTRTSGNQQKNNIAEQQMK
LLLERQKEFKLAAIEAKKAGEIDQAKEYLKIFKGFDSLLNAASSGLPVDL
STLPVPPSQRDNLEASFAIVSAEECDPTDDICEIGVRMEEQLAKQLMMCK
NTRDHHKAMGDVAGMNRFENLALTVQKDLDLVRYSKRKNEPLPKFHYEKR
SFNIVHCNTDLTDSELEIVVVRGISYNVANPKDVDTYVRVEFPLLNDESF
KTKTNVIRDTSSPDYDERFKVDIQRTNRQFQRIFKRHGVKFEIYSRGGFL
RSDTLIGTVNVKLQPLETKCEIHDTYDLMDGRKQVGGKLEVKIRVRNPIL
TKQMEHITEKWLVLDAASFLDH
BO22771.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)gd1-PA | 816 | CG4713-PA | 1..816 | 1..816 | 4203 | 100 | Plus |
| l(2)gd1-PB | 834 | CG4713-PB | 1..834 | 1..816 | 4174 | 97.8 | Plus |
