BO22778.complete Sequence
2473 bp assembled on 2010-02-17
GenBank Submission: KX799370
> BO22778.complete
GAAGTTATCAGTCGACATGTCTGGTGGTCCATCCATAACGATAAAAAGCC
AACCAATCGATGGTAACAACACGGGCAACGCTGCGGCGCAACAGCAGCAG
CAGGCAGCGAATGGCGCAGCAACCGCTGGTGCATCTGGAGCCGCTGGCAG
CGCCCAGAATCCAGGACACGGAGGAGCTGCGTCCGGCGCTGGCAGTGTGC
CGGCAGAGGGAACGCGCCAGAACAGCCTACAGCGCATTCAGCAGCGAAAG
CAAAAGGTCTTCAATCTGCCCGTGCCACAGAAACTGGCCAAATTGTCGAT
GTATTCCGCCTGCCAGTCTGAGGGATGCCGTTGCACCGGCTGGAAGACAC
CGCAGGAAAATCGCCACCGTGACGTCGAGTCCTCCTACTGTCCGGAGTTC
AACGAGGAGTGCCGCAACACCAGCTGTCGCCATTCGCTGAGATCGCACAT
AGCCCATCTGGACAATATATCCAGTTCCAGCATGAACGAGCTACTGGGCG
CCATTATAGACATGGAGAACCTATTCATGTCCATGCAGCGCGTCGAGGAC
GAGGACACCAAGAAGGTGTACCAGTACCTCTTCCGTTTGCTGCGCCAGTG
CGTCCTCACGCGCCAGCAGGCGGTCATCCGGGGTCCTCTCGGCGATCCAC
CATTCGAGACGCCGTGCATCACCAAGGCTGTGCTCTCGTTGGTCTTCTAC
AAGTACAATCACCTGAGCACGCCTGAACTCCAAACCATGACCGAGGTGGC
CAAGACGTTCTTGAACTTTCTGAACCACTACAACTTTGAATCGCCGTCGA
CCAGGAGAGGAGATCTCACCCACGAGGATGCCTCTAACTACAAAATCAAC
TACACCAGGTGGTTGGTGTTCTGCCACGTGCCCGCCTTCTGTAACTCCCT
GCGCCAATGTGAAACGTCCCTAGTGTTTGGACGAACGCTCCTGCGCACCG
TTTTCCAGTGCATGTCGCAGCAGCTGAAAAAGAAGTGCATCTCCGAGCGG
GATCGCTTTCCCGAGGACAAGCGTTCGATCATCACGCTGATGCCGAAGTT
TTTGGAAACGCTTCGCGCCGAATTGCTCAAGGATGATTCGCCCATCTGGG
ATACCAGCTACCGCCCGTCAAATTCCTTTGTCATCCAGCAGAGAAAGCGT
AACCAGGAGGTGGCAAATGTACCCATTGGTCCCAGTGCAGCAAGCATTGG
TGGAAACAAGAGGACCAGTGTGGGTGAACCGCTCCACAAGCGAATCAAAA
AGGAGCCCACCGATCGTCCAAGCAGTGAGAATTTGGATGACCTGCCTGCG
GATGTAGTAATGCGCGCCATGAAATCGGTGTCCGAGTCGAAGACCACCAA
CAAAGCGGAAATTCTCTTTCCGGTTAATGTGTCGCGGGATGAGAACGTCA
AGGCGGAGGAGCAGAAGCGAGCCATTGAGTTCCATGTGGTGGGCAATTCG
CTGACCAAACCGGTGGACAAGCAGACTGTTTTGTGGCTACTGGGCCTGCA
GCTCGTATTTGCCTATCAGCTACCCGAGATGCCGCGCGAGTACATCAGCC
AGTTGGTTTTCGACACCAAGCACAAAACACTGGCGCTCATCAAGGAAAAC
CAACCCATCGGCGGCATCTGTTTCCGCCCGTTTCCGTCGCAAGGCTTCAC
CGAGATCGTTTTCTGCGCGGTCACCATGTCGGAACAAGTTAAGGGCTATG
GCACGCACTTGATGAACCACTTGAAGGACTACAGCATACAGAGGGGTATC
AAGCATCTGCTCACATTCGCCGATTGCGATGCCATCGGGTACTTCAAGAA
GCAGGGTTTCTCCAAGGACATCAAATTGGCGCGACCAGTTTATGCGGGCT
ACATCAAGGAGTACGATAGTGCTACTCTCATGCACTGCGAGCTGCATCCA
AGCATTGTGAACACGCAGTTCATAGCTGTAATTCGCAGTCAGAGCGAGAT
TCTGAAGGAGCTGATCGCACAGCGCCACAACGAGGTGCAGAAAGTAAGAC
CCGGCTTGACTTGCTTCAAGGAGGGCCTGCCCGTGATTCCCGTGGAATCG
ATTCCTGGTCTGCGGGAGATCGGTTGGAAGCCGCAAAATCGTCCGGCGCG
CTCATCGCGACCCCTCGAGGAATCCACCGATCCGGAGAAGCTGGCCACGT
CCTTTGCATCCGTGCTGCAATCCGTGCGCCAGCACACCACCGCCTGGCCC
TTCCTGCGCCCGGTGACCGCGGCCGAAGTTCCGGACTACTACGATCACAT
TAAATATCCCATGGACCTGAAGACCATGGGCGAGCGCCTGAAGAAGGGTT
ACTACCAAACGCGCCGCCTGTTCATGGCGGACATGGCGCGCATTTTCTCC
AACTGTCGGTTCTACAATTCGCCCGACACCGAGTATTATCGGTGTGCCAA
CTCCCTGGAGCGCTACTTCCAGACCAAGATGCGCGAGCTGGGGCTGTGGG
ACAAAGCAAGCTTTCTAGACCAT
BO22778.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:16:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn5-RA | 2442 | CG4107-PA | 1..2439 | 17..2455 | 12195 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn5-RA | 2770 | CG4107-RA | 112..2550 | 17..2455 | 12195 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12522645..12523903 | 1275..17 | 6295 | 100 | Minus |
| 3L | 28110227 | 3L | 12521938..12522594 | 1928..1272 | 3285 | 100 | Minus |
| 3L | 28110227 | 3L | 12521349..12521876 | 2455..1928 | 2640 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 03:16:15 has no hits.
BO22778.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-17 09:38:20 Download gff for
BO22778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pcaf-RA | 99..2537 | 17..2457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:35 Download gff for
BO22778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn5-RA | 112..2550 | 17..2457 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:31 Download gff for
BO22778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gcn5-RA | 112..2550 | 17..2457 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:31 Download gff for
BO22778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12521346..12521875 | 1929..2457 | 99 | <- | Minus |
| 3L | 12521938..12522590 | 1276..1928 | 100 | <- | Minus |
| 3L | 12522645..12523903 | 17..1275 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:35 Download gff for
BO22778.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12514446..12514975 | 1929..2457 | 99 | <- | Minus |
| arm_3L | 12515038..12515690 | 1276..1928 | 100 | <- | Minus |
| arm_3L | 12515745..12517003 | 17..1275 | 100 | | Minus |
BO22778.pep Sequence
Translation from 16 to 2473
> BO22778.pep
MSGGPSITIKSQPIDGNNTGNAAAQQQQQAANGAATAGASGAAGSAQNPG
HGGAASGAGSVPAEGTRQNSLQRIQQRKQKVFNLPVPQKLAKLSMYSACQ
SEGCRCTGWKTPQENRHRDVESSYCPEFNEECRNTSCRHSLRSHIAHLDN
ISSSSMNELLGAIIDMENLFMSMQRVEDEDTKKVYQYLFRLLRQCVLTRQ
QAVIRGPLGDPPFETPCITKAVLSLVFYKYNHLSTPELQTMTEVAKTFLN
FLNHYNFESPSTRRGDLTHEDASNYKINYTRWLVFCHVPAFCNSLRQCET
SLVFGRTLLRTVFQCMSQQLKKKCISERDRFPEDKRSIITLMPKFLETLR
AELLKDDSPIWDTSYRPSNSFVIQQRKRNQEVANVPIGPSAASIGGNKRT
SVGEPLHKRIKKEPTDRPSSENLDDLPADVVMRAMKSVSESKTTNKAEIL
FPVNVSRDENVKAEEQKRAIEFHVVGNSLTKPVDKQTVLWLLGLQLVFAY
QLPEMPREYISQLVFDTKHKTLALIKENQPIGGICFRPFPSQGFTEIVFC
AVTMSEQVKGYGTHLMNHLKDYSIQRGIKHLLTFADCDAIGYFKKQGFSK
DIKLARPVYAGYIKEYDSATLMHCELHPSIVNTQFIAVIRSQSEILKELI
AQRHNEVQKVRPGLTCFKEGLPVIPVESIPGLREIGWKPQNRPARSSRPL
EESTDPEKLATSFASVLQSVRQHTTAWPFLRPVTAAEVPDYYDHIKYPMD
LKTMGERLKKGYYQTRRLFMADMARIFSNCRFYNSPDTEYYRCANSLERY
FQTKMRELGLWDKASFLDH
BO22778.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:19:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gcn5-PA | 813 | CG4107-PA | 1..813 | 1..813 | 4272 | 100 | Plus |
| E(bx)-PB | 2649 | CG32346-PB | 2539..2638 | 703..806 | 237 | 42.3 | Plus |
| E(bx)-PI | 2668 | CG32346-PI | 2558..2657 | 703..806 | 237 | 42.3 | Plus |
| E(bx)-PJ | 2669 | CG32346-PJ | 2559..2658 | 703..806 | 237 | 42.3 | Plus |
| E(bx)-PE | 2669 | CG32346-PE | 2559..2658 | 703..806 | 237 | 42.3 | Plus |
