BO22815.complete Sequence
1504 bp assembled on 2010-01-15
GenBank Submission: KX798791
> BO22815.complete
GAAGTTATCAGTCGACATGATGAGCGCTCGCTCGGTGTCGCCCAAAGTGC
TGCTGGACATAAGCTACAAGCCCACACTGCCCAACATCATGGAGCTGCAG
AACAATGTGATCAAGCTGATACAGGTGGAGCAGCAGGCCTACATGCAGTC
CGGCTATCAGCTGCAGCACCAGCAGCAGCACCTCCACTCCCACCAGCACC
ACCAGCAGCACCACCAGCAGCAGCATGCCCAGTACGCCCCACTGCCCTCG
GAGTACGCCGCCTATGGTATTACCGAACTGGAGGACACAGACTACAACAT
ACCCAGCAACGAGGTCCTGAGCACCAGCAGCAACCAGAGTGCCCAGAGCA
CCAGTCTGGAGCTGAACAACAACAACACCAGCAGCAACACCAACAGCTCC
GGCAACAATCCGAGTGGCTTCGATGGCCAGGCCAGCAGCGGATCCTCTTG
GAACGAGCACGGCAAGAGGGCCAGGAGCAGTGGCGACTACGATTGCCAAA
CCGGGGGATCACTGGTCATGCAGCCCGAGCACAAGAAGCTAATCCACCAG
CAACAGCAGCAGCAACAACAGCACCAGCAACAGATCTATGTGGATTACTT
GCCCACCACCGTGGACGAGGTGGCCTCGGCTCAATCTTGTCCTGGCGTCC
AGAGCACGTGCACCTCCCCGCAATCCCACTTCGATTTTCCCGACGAGGAG
CTGCCCGAGCACAAGGCCCAGGTGTTCCTGCCCCTCTACAACAACCAGCA
GCAGCAGTCGCAGCAGCTGCAACAGCAGCAGCCGCACCAGCAAAGCCACG
CCCAGATGCACTTCCAAAACGCCTACAGACAAAGTTTCGAGGGCTACGAG
CCGGCCAACTCGCTGAACGGCAGTGCTTACTCCAGCTCGGATCGGGATGA
CATGGAGTACGCCCGCCACAACGCCCTGAGTTCAGTTAGCGATCTCAACG
GAGGAGTCATGTCGCCCGCCTGCTTGGCGGATGACGGCAGTGCCGGCAGT
TTGCTGGACGGATCCGATGCCGGCGGAAAGGCCTTCCGCAAGCCACGTCG
CCGGCTGAAGCGGAAGCCCAGCAAGACGGAGGAGACGGACGAGTTCAGCA
ACCAGCGGGTCATGGCCAATGTGAGGGAGCGCCAGCGCACCCAGAGCCTC
AACGACGCCTTCAAGTCCCTGCAGCAGATCATCCCCACGCTGCCCAGCGA
CAAGCTCAGCAAGATCCAGACCCTCAAACTGGCCACAAGATACATCGACT
TCCTGTGCCGCATGCTCAGCTCGAGTGATATATCTTTGCTGAAGGCCTTG
GAGGCCCAGGGATCGCCCTCGGCGTATGGATCGGCCAGCTCCCTCCTGAG
TGCCGCCGCCAATGGAGCCGAGGCAGATCTGAAGTGCCTGCGCAAGGCCA
ACGGAGCACCCATTATCCCGCCCGAGAAGCTGAGTTATCTGTTCGGGGTG
TGGCGCATGGAGGGCGACGCGCAGCACCAGAAGGCAGCAAGCTTTCTAGA
CCAT
BO22815.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:15:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twi-RC | 1473 | CG2956-PC | 1..1470 | 17..1486 | 7335 | 99.9 | Plus |
| twi-RB | 1473 | CG2956-PB | 1..1470 | 17..1486 | 7335 | 99.9 | Plus |
| twi-RA | 1473 | CG2956-PA | 1..1470 | 17..1486 | 7335 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:15:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twi-RC | 2368 | CG2956-RC | 647..2116 | 17..1486 | 7335 | 99.9 | Plus |
| twi-RB | 1883 | CG2956-RB | 162..1631 | 17..1486 | 7335 | 99.9 | Plus |
| twi-RA | 2097 | CG2956-RA | 376..1845 | 17..1486 | 7335 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:15:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23046483..23047705 | 17..1239 | 6115 | 100 | Plus |
| 2R | 25286936 | 2R | 23047825..23048073 | 1238..1486 | 1230 | 99.6 | Plus |
Blast to na_te.dros performed 2014-11-28 03:15:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2539 | 156..389 | 263 | 59.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2599..2999 | 156..571 | 261 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2707..2982 | 107..397 | 259 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2543 | 166..411 | 257 | 58.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2452..2889 | 156..575 | 257 | 56.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6715..6905 | 296..490 | 252 | 63.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6925 | 180..399 | 246 | 62.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2367..2849 | 82..583 | 245 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2873 | 200..793 | 238 | 54.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2339..2855 | 285..793 | 233 | 52.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6745..7035 | 291..576 | 225 | 58.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6932 | 365..581 | 221 | 59.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2531 | 373..583 | 219 | 59.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6839 | 323..439 | 204 | 67.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6728..6996 | 295..582 | 188 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1506..1585 | 330..407 | 170 | 70 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1173 | 295..407 | 170 | 63.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2335..2544 | 365..572 | 165 | 55.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1065..1156 | 320..408 | 164 | 67.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1143 | 323..407 | 163 | 68.6 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3596..3624 | 366..394 | 127 | 93.1 | Plus |
| Dvir\Het-A | 6610 | Dvir\Het-A HETAVIR 6610bp | 3240..3323 | 325..405 | 125 | 63.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1487..1564 | 333..407 | 113 | 62.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5649..5685 | 370..406 | 113 | 78.4 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 979..1024 | 365..410 | 113 | 71.7 | Plus |
BO22815.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:05 Download gff for
BO22815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twi-RB | 158..1627 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:23 Download gff for
BO22815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twi-RA | 376..1845 | 17..1488 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:22 Download gff for
BO22815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| twi-RA | 376..1845 | 17..1488 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:22 Download gff for
BO22815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23046483..23047705 | 17..1239 | 100 | -> | Plus |
| 2R | 23047827..23048073 | 1240..1488 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:23 Download gff for
BO22815.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 18934006..18935228 | 17..1239 | 100 | -> | Plus |
| arm_2R | 18935350..18935596 | 1240..1488 | 98 | | Plus |
BO22815.pep Sequence
Translation from 16 to 1504
> BO22815.pep
MMSARSVSPKVLLDISYKPTLPNIMELQNNVIKLIQVEQQAYMQSGYQLQ
HQQQHLHSHQHHQQHHQQQHAQYAPLPSEYAAYGITELEDTDYNIPSNEV
LSTSSNQSAQSTSLELNNNNTSSNTNSSGNNPSGFDGQASSGSSWNEHGK
RARSSGDYDCQTGGSLVMQPEHKKLIHQQQQQQQQHQQQIYVDYLPTTVD
EVASAQSCPGVQSTCTSPQSHFDFPDEELPEHKAQVFLPLYNNQQQQSQQ
LQQQQPHQQSHAQMHFQNAYRQSFEGYEPANSLNGSAYSSSDRDDMEYAR
HNALSSVSDLNGGVMSPACLADDGSAGSLLDGSDAGGKAFRKPRRRLKRK
PSKTEETDEFSNQRVMANVRERQRTQSLNDAFKSLQQIIPTLPSDKLSKI
QTLKLATRYIDFLCRMLSSSDISLLKALEAQGSPSAYGSASSLLSAAANG
AEADLKCLRKANGAPIIPPEKLSYLFGVWRMEGDAQHQKAASFLDH
BO22815.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:09:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| twi-PC | 490 | CG2956-PC | 1..490 | 1..490 | 2545 | 100 | Plus |
| twi-PB | 490 | CG2956-PB | 1..490 | 1..490 | 2545 | 100 | Plus |
| twi-PA | 490 | CG2956-PA | 1..490 | 1..490 | 2545 | 100 | Plus |
| tlk-PB | 1463 | CG34412-PB | 117..369 | 47..321 | 204 | 26.9 | Plus |
| Pdp1-PJ | 633 | CG17888-PJ | 30..231 | 97..291 | 184 | 30.6 | Plus |
