BO22828.complete Sequence
2314 bp assembled on 2010-08-03
GenBank Submission: KX795672
> BO22828.complete
GAAGTTATCAGTCGACATGTTTCGATCAAGTTTCGACAAAAACTTAGAAA
ATGCCACCAGTCACTTGCGTCTGGAGCCCGACTGGCCATCAATTCTTCTG
ATTTGCGATGAAATCAACCAGAAAGATGTCACTCCCAAGAATGCCTTTGC
CGCCATCAAGAAGAAGATGAACTCGCCCAACCCGCACTCCTCCTGCTATT
CCCTCCTGGTCCTCGAGAGCATCGTCAAGAACTGCGGCGCACCCGTTCAC
GAGGAGGTGTTCACCAAGGAGAACTGCGAGATGTTCAGCAGTTTCCTCGA
GTCGACGCCCCACGAGAACGTGCGCCAGAAGATGCTGGAGCTGGTGCAGA
CCTGGGCGTACGCCTTCCGCTCCTCGGACAAGTACCAGGCCATCAAGGAC
ACCATGACCATCCTGAAGGCGAAGGGGCACACTTTCCCCGAACTTCGGGA
GGCAGATGCCATGTTCACGGCGGACACGGCGCCCAACTGGGCAGATGGCA
GGGTATGCCATCGCTGTCGCGTGGAGTTCACCTTCACCAACCGGAAGCAC
CACTGCCGGAACTGCGGCCAGGTCTTCTGTGGCCAATGCACGGCCAAGCA
GTGTCCGCTGCCCAAGTACGGCATCGAAAAGGAGGTGCGTGTGTGCGACG
GCTGCTTCGCTGCCCTCCAGCGTCCGACGAGCGGCAGTGGAGGCGCTAAG
TCCGGACCACGTCCGGCGGACAGCGAGCTACCGGCGGAGTATCTGAACAG
CACTTTGGCGCAGCAGGTGCAGACACCAGCTCGCAAGACCGAGCAGGAAC
TCAAGGAGGAGGAGGAACTGCAGCTGGCGCTGGCCCTCAGTCAATCGGAA
GCGGAGCAGCAGAAGCCCAAGCTGCAATCCCTGCCACCCGCTGCCTATCG
CATGCAGCAAAGGTCTCCCAGTCCGGAGGCACCGCCAGAACCCAAGGAGT
ATCACCAGCAGCCGGAGGAGGCTACCAATCCGGAGCTGGCCAAGTACTTG
AACCGCAGCTACTGGGAGCAGCGCAAGATCAGCGAATCGTCATCCATGGC
AAGTCCCTCGGCACCGAGCCCCATGCCACCAACGCCGCAGCCCCAGCAGA
TCATGCCCCTGCAGGTCAAGAGTGCGGATGAAGTGCAGATCGATGAGTTT
GCCGCCAATATGCGCACGCAGGTGGAGATCTTTGTTAACCGCATGAAGTC
GAACTCGAGCCGCGGTCGCAGCATCTCCAACGACTCCTCTGTGCAGACCC
TCTTCATGACCCTGACCTCGTTGCACTCGCAGCAGTTGTCGTACATCAAG
GAGATGGACGACAAGCGCATGTGGTACGAGCAGCTGCAGGACAAGCTAAC
CCAGATCAAGGACTCGCGTGCTGCGCTGGATCAGCTGCGTCAGGAGCATG
TGGAGAAGCTGCGCAGGATCGCCGAGGAGCAGGAACGTCAGCGACAGATG
CAGATGGCCCAGAAACTGGACATAATGCGCAAGAAGAAGCAGGAGTATCT
GCAGTATCAACGACAGCTAGCATTGCAGCGCATCCAGGAGCAGGAGCGCG
AGATGCAGCTGCGCCAGGAGCAGCAGAAGGCGCAGTATTTGATGGGCCAG
TCGGCTCCACCTTTCCCTTACATGCCACCATCGGCGGTGCCACAACATGG
TTCGCCCTCGCATCAGCTCAACAACGTTTATAATCCCTATGCTGCCGGTG
TGCCCGGCTATTTGCCTCAGGGTCCTGCACCGGCTCCCAACGGACATGGC
CAGTTTCAGGCCATTCCGCCGGGCATGTACAATCCGGCAATACAGCAGCC
GATGCCGCCGAATCTCCAGCCCGGCGGATTAATGCAACAGCCCGCGCCAC
CTGGAAATCCCCAGATGATGCCGCCCATGCCCGAAAATCAGTTTGCCAAC
AATCCTGCTGCTATCCTCCAGCTGCCGCAGCAGCATTCGATCGCCCAGCC
TCCTCAAATACCATTCCAACCGCAGCCTCAACAGATTCCTGGTCAGCAGC
CTCAACAGATTCCTGGTCAGCAGCCTCAACAGATTCCTGGTCAGCAGCCT
CAACAGATTCCTGGTCAGCAGCCACAGCAGATTCCTGTCCAGCAACCTCA
GCCACAACCCCAAATGGGTCACGTAATGCTGCAGCAGCACCAGGCTCCTC
CAGCAGCACAGGCACCTCCAGTTACCGAAATCGCCAACAATCAAGTCCAA
GCGGTGGCTGCTGCACCTGCTCCGCCGCAAAACGAACCGGGACCCGCGCC
CGTTAAAGCTGAGGAGCCGGCTACGGCGGAACTGATTAGCTTTGATGCAA
GCTTTCTAGACCAT
BO22828.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:53:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrs-RC | 2283 | CG2903-PC | 1..2280 | 17..2296 | 11385 | 100 | Plus |
| Hrs-RB | 2283 | CG2903-PB | 1..2280 | 17..2296 | 11385 | 100 | Plus |
| Hrs-RA | 1944 | CG2903-PA | 43..1941 | 398..2296 | 9480 | 99.9 | Plus |
| Hrs-RC | 2283 | CG2903-PC | 1956..2062 | 1996..2102 | 445 | 94.4 | Plus |
| Hrs-RC | 2283 | CG2903-PC | 1980..2086 | 1972..2078 | 445 | 94.4 | Plus |
| Hrs-RB | 2283 | CG2903-PB | 1956..2062 | 1996..2102 | 445 | 94.4 | Plus |
| Hrs-RB | 2283 | CG2903-PB | 1980..2086 | 1972..2078 | 445 | 94.4 | Plus |
| Hrs-RC | 2283 | CG2903-PC | 1956..2036 | 2020..2100 | 330 | 93.8 | Plus |
| Hrs-RC | 2283 | CG2903-PC | 2004..2084 | 1972..2052 | 330 | 93.8 | Plus |
| Hrs-RB | 2283 | CG2903-PB | 1956..2036 | 2020..2100 | 330 | 93.8 | Plus |
| Hrs-RB | 2283 | CG2903-PB | 2004..2084 | 1972..2052 | 330 | 93.8 | Plus |
| Hrs-RC | 2283 | CG2903-PC | 1956..2012 | 2044..2100 | 210 | 91.2 | Plus |
| Hrs-RC | 2283 | CG2903-PC | 2028..2084 | 1972..2028 | 210 | 91.2 | Plus |
| Hrs-RB | 2283 | CG2903-PB | 1956..2012 | 2044..2100 | 210 | 91.2 | Plus |
| Hrs-RB | 2283 | CG2903-PB | 2028..2084 | 1972..2028 | 210 | 91.2 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrs-RC | 2665 | CG2903-RC | 89..2370 | 15..2296 | 11395 | 100 | Plus |
| Hrs-RB | 2714 | CG2903-RB | 138..2419 | 15..2296 | 11395 | 100 | Plus |
| Hrs-RA | 2251 | CG2903-RA | 58..1956 | 398..2296 | 9480 | 99.9 | Plus |
| Hrs-RC | 2665 | CG2903-RC | 2046..2152 | 1996..2102 | 445 | 94.4 | Plus |
| Hrs-RC | 2665 | CG2903-RC | 2070..2176 | 1972..2078 | 445 | 94.4 | Plus |
| Hrs-RB | 2714 | CG2903-RB | 2095..2201 | 1996..2102 | 445 | 94.4 | Plus |
| Hrs-RB | 2714 | CG2903-RB | 2119..2225 | 1972..2078 | 445 | 94.4 | Plus |
| Hrs-RC | 2665 | CG2903-RC | 2046..2126 | 2020..2100 | 330 | 93.8 | Plus |
| Hrs-RC | 2665 | CG2903-RC | 2094..2174 | 1972..2052 | 330 | 93.8 | Plus |
| Hrs-RB | 2714 | CG2903-RB | 2095..2175 | 2020..2100 | 330 | 93.8 | Plus |
| Hrs-RB | 2714 | CG2903-RB | 2143..2223 | 1972..2052 | 330 | 93.8 | Plus |
| Hrs-RC | 2665 | CG2903-RC | 2118..2174 | 1972..2028 | 210 | 91.2 | Plus |
| Hrs-RC | 2665 | CG2903-RC | 2046..2102 | 2044..2100 | 210 | 91.2 | Plus |
| Hrs-RB | 2714 | CG2903-RB | 2095..2151 | 2044..2100 | 210 | 91.2 | Plus |
| Hrs-RB | 2714 | CG2903-RB | 2167..2223 | 1972..2028 | 210 | 91.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 2741557..2743082 | 771..2296 | 7615 | 99.9 | Plus |
| 2L | 23513712 | 2L | 2741106..2741482 | 396..772 | 1885 | 100 | Plus |
| 2L | 23513712 | 2L | 2740520..2740785 | 133..398 | 1330 | 100 | Plus |
| 2L | 23513712 | 2L | 2742758..2742864 | 1996..2102 | 445 | 94.4 | Plus |
| 2L | 23513712 | 2L | 2742782..2742888 | 1972..2078 | 445 | 94.4 | Plus |
| 2L | 23513712 | 2L | 2740387..2740473 | 46..132 | 435 | 100 | Plus |
| 2L | 23513712 | 2L | 2742758..2742838 | 2020..2100 | 330 | 93.8 | Plus |
| 2L | 23513712 | 2L | 2742806..2742886 | 1972..2052 | 330 | 93.8 | Plus |
| 2L | 23513712 | 2L | 2742758..2742814 | 2044..2100 | 210 | 91.2 | Plus |
| 2L | 23513712 | 2L | 2742830..2742886 | 1972..2028 | 210 | 91.2 | Plus |
Blast to na_te.dros performed 2014-11-28 02:53:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2382..2629 | 1919..2164 | 156 | 54 | Plus |
BO22828.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 14:59:03 Download gff for
BO22828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrs-RC | 97..2370 | 23..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:47 Download gff for
BO22828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrs-RB | 146..2419 | 23..2298 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:07 Download gff for
BO22828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hrs-RB | 146..2419 | 23..2298 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:07 Download gff for
BO22828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 2740187..2740211 | 23..47 | 100 | -> | Plus |
| 2L | 2740389..2740473 | 48..132 | 100 | -> | Plus |
| 2L | 2740520..2740784 | 133..397 | 100 | -> | Plus |
| 2L | 2741108..2741482 | 398..772 | 100 | -> | Plus |
| 2L | 2741559..2743082 | 773..2298 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:47 Download gff for
BO22828.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 2740187..2740211 | 23..47 | 100 | -> | Plus |
| arm_2L | 2740389..2740473 | 48..132 | 100 | -> | Plus |
| arm_2L | 2740520..2740784 | 133..397 | 100 | -> | Plus |
| arm_2L | 2741108..2741482 | 398..772 | 100 | -> | Plus |
| arm_2L | 2741559..2743082 | 773..2298 | 99 | | Plus |
BO22828.pep Sequence
Translation from 16 to 2314
> BO22828.pep
MFRSSFDKNLENATSHLRLEPDWPSILLICDEINQKDVTPKNAFAAIKKK
MNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHE
NVRQKMLELVQTWAYAFRSSDKYQAIKDTMTILKAKGHTFPELREADAMF
TADTAPNWADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQCPLPK
YGIEKEVRVCDGCFAALQRPTSGSGGAKSGPRPADSELPAEYLNSTLAQQ
VQTPARKTEQELKEEEELQLALALSQSEAEQQKPKLQSLPPAAYRMQQRS
PSPEAPPEPKEYHQQPEEATNPELAKYLNRSYWEQRKISESSSMASPSAP
SPMPPTPQPQQIMPLQVKSADEVQIDEFAANMRTQVEIFVNRMKSNSSRG
RSISNDSSVQTLFMTLTSLHSQQLSYIKEMDDKRMWYEQLQDKLTQIKDS
RAALDQLRQEHVEKLRRIAEEQERQRQMQMAQKLDIMRKKKQEYLQYQRQ
LALQRIQEQEREMQLRQEQQKAQYLMGQSAPPFPYMPPSAVPQHGSPSHQ
LNNVYNPYAAGVPGYLPQGPAPAPNGHGQFQAIPPGMYNPAIQQPMPPNL
QPGGLMQQPAPPGNPQMMPPMPENQFANNPAAILQLPQQHSIAQPPQIPF
QPQPQQIPGQQPQQIPGQQPQQIPGQQPQQIPGQQPQQIPVQQPQPQPQM
GHVMLQQHQAPPAAQAPPVTEIANNQVQAVAAAPAPPQNEPGPAPVKAEE
PATAELISFDASFLDH
BO22828.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:46:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hrs-PC | 760 | CG2903-PC | 1..760 | 1..760 | 4029 | 100 | Plus |
| Hrs-PB | 760 | CG2903-PB | 1..760 | 1..760 | 4029 | 100 | Plus |
| Hrs-PA | 647 | CG2903-PA | 15..647 | 128..760 | 3358 | 100 | Plus |
| Wnk-PN | 2441 | CG7177-PN | 921..1416 | 231..762 | 246 | 23.8 | Plus |
| Wnk-PL | 2441 | CG7177-PL | 921..1416 | 231..762 | 246 | 23.8 | Plus |
