Clone BO22876 Report

Search the DGRC for BO22876

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:228
Well:76
Vector:pDNR-Dual
Associated Gene/TranscriptShc-RA
Protein status:BO22876.pep: Imported from assembly
Sequenced Size:1261

Clone Sequence Records

BO22876.complete Sequence

1261 bp assembled on 2010-01-15

GenBank Submission: KX796926

> BO22876.complete
GAAGTTATCAGTCGACATGCCTAAGAATGGCGATGCCGGCAACCGGAGCG
GTTCCGGGACAACCAGCGACGGCTGCATCTATCCGGACGACGTCATAATG
GGCGTGGGTGTTGCATTCAACGTGCGGTACACGGGATGCGTTGAGGTCAA
GACCTCAATGAAATCCCTGGACTTCGAGACCCGTACGCAGTTAGCGCGAG
AGTGCATCAATCGAGTTTGCGAGGCGGCCGGTTTAAAGTCTGCTGGCAAG
CGGAGATTAACCAACTTCATATCGGATCGACCCAGCATGCAGCACGCCGG
CACCAACATCATCATTAATGTATCGAGCCGTGCTCTGTCGCTAAGCAACG
TGGAAACGGGCGAGGTTATAGCCAATCACAATATGCCGCGCATATCGTTC
GCGTCCGGCGGTGACAATGACACCCTCGACTTCCTCGCCTACATAGCCAA
GAATGAGGATGAATGGCGGGCATGTTATGTCCTGGAATGCGCTGGCGGCC
AAAGCGAGGATCTAATAGTGACCATTGGCAAGGCGTTTGCCTTGCGCTTC
AACGCTCTCAGTAGGCTCAATGATCCCTCGGCGGATTGTAACATCAATCA
AAGCTGCAAGGAGAATGTGAAGGAGTACTACAACGATTTGCCAAACAAGC
TGCCACCAGAAGTGCCGGAACCACAACAACAGCAGGTGCAGCAACCTCTC
CATCCGCATGCGCCTCGTGTGGCACAACTGAATCTGAAGAAGCCTCGCGA
TCGCCTGAGCAGCAACCTCATCGACCTCAACTCCCCGCCTCCCGATCAGA
CGACCAATAAGTTAGGCCACTTTGATCCCCTCCAAGCGACCACAGCTGCC
AATTCTGTTTTGCCCTCTGTTCGCGATGTGTTCGACGGACCGCAATGCCC
GCTCACAGCGGAGGTGTGGTTCCATGCGGGCATATCCAGACCAATATCGG
AGCGTTTGCTGCAGCAGGACGGCGACTTTCTGGTGCGCGAGTCACAGGGA
AAGCGGGGCCAGTACGTACTAACCGGATTAGAGGGCAAGACGCCCAAGCA
TCTGCTTCTCATCGATCCCGAGGGCGTGGTCCGAACCAAAGATCGCATCT
TCGACAGCATTAGCCATCTGATCAACTACCACTGGGCACACGCGCTGCCC
ATCATTTCGGAGGATTCCGAGCTGGTCTTGCGTAATCCGGTGCGAAGACC
CCAGCAGGATCAGGCTGCGTCGCCCATTACATCAGCATCTTCCGCAAGCT
TTCTAGACCAT

BO22876.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:16:37
Subject Length Description Subject Range Query Range Score Percent Strand
Shc-RA 1230 CG3715-PA 1..1227 17..1243 6135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:16:38
Subject Length Description Subject Range Query Range Score Percent Strand
Shc-RA 1600 CG3715-RA 134..1360 17..1243 6135 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:16:34
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 9427386..9428431 198..1243 5230 100 Plus
3L 28110227 3L 9427143..9427324 17..198 910 100 Plus
Blast to na_te.dros performed 2014-11-28 03:16:35
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6718..6863 643..784 135 58.8 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6765..6893 648..781 135 60 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6741..6864 648..770 131 57.3 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2301..2379 635..713 125 62 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2368..2502 648..781 114 54.8 Plus

BO22876.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:05:14 Download gff for BO22876.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 144..1370 17..1245 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:39:44 Download gff for BO22876.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 134..1360 17..1245 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:46:39 Download gff for BO22876.complete
Subject Subject Range Query Range Percent Splice Strand
Shc-RA 134..1360 17..1245 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:46:39 Download gff for BO22876.complete
Subject Subject Range Query Range Percent Splice Strand
3L 9427143..9427324 17..198 100 -> Plus
3L 9427387..9428431 199..1245 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:39:44 Download gff for BO22876.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 9420243..9420424 17..198 100 -> Plus
arm_3L 9420487..9421531 199..1245 99   Plus

BO22876.pep Sequence

Translation from 16 to 1261

> BO22876.pep
MPKNGDAGNRSGSGTTSDGCIYPDDVIMGVGVAFNVRYTGCVEVKTSMKS
LDFETRTQLARECINRVCEAAGLKSAGKRRLTNFISDRPSMQHAGTNIII
NVSSRALSLSNVETGEVIANHNMPRISFASGGDNDTLDFLAYIAKNEDEW
RACYVLECAGGQSEDLIVTIGKAFALRFNALSRLNDPSADCNINQSCKEN
VKEYYNDLPNKLPPEVPEPQQQQVQQPLHPHAPRVAQLNLKKPRDRLSSN
LIDLNSPPPDQTTNKLGHFDPLQATTAANSVLPSVRDVFDGPQCPLTAEV
WFHAGISRPISERLLQQDGDFLVRESQGKRGQYVLTGLEGKTPKHLLLID
PEGVVRTKDRIFDSISHLINYHWAHALPIISEDSELVLRNPVRRPQQDQA
ASPITSASSASFLDH

BO22876.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:09:50
Subject Length Description Subject Range Query Range Score Percent Strand
Shc-PA 409 CG3715-PA 1..409 1..409 2142 100 Plus