BO22905.complete Sequence
1420 bp assembled on 2010-01-27
GenBank Submission: KX794759
> BO22905.complete
GAAGTTATCAGTCGACATGGGCAAGGAGAAGATCCATATTAACATTGTGG
TCATTGGCCATGTGGACTCCGGCAAGTCGACGACCACCGGCCACTTGATC
TACAAATGCGGCGGCATCGACAAGCGTACGATTGAGAAGTTCGAGAAGGA
GGCCCAGGAAATGGGAAAAGGCTCCTTTAAGTACGCCTGGGTACTGGACA
AGCTGAAGGCAGAGCGGGAGCGGGGCATCACCATCGACATTGCCCTATGG
AAGTTCGAGACGTCCAAGTACTATGTGACCATCATCGATGCCCCTGGTCA
CAGGGATTTCATCAAGAACATGATTACCGGTACCTCTCAGGCCGATTGTG
CGGTGCTGATCGTCGCCGCCGGAACTGGAGAGTTCGAGGCCGGGATCTCG
AAGAACGGCCAGACCCGCGAGCACGCCCTTCTGGCATTCACGCTGGGCGT
GAAGCAGCTTATTGTGGGCGTCAACAAGATGGACTCCACTGAGCCGCCGT
ACAGCGAGGCCCGCTACGAGGAGATCAAGAAGGAGGTGTCCTCGTACATC
AAGAAGATCGGCTACAATCCGGCCTCGGTGGCCTTCGTGCCCATCTCCGG
ATGGCACGGCGACAATATGCTGGAGCCGTCCGAGAAGATGCCCTGGTTCA
AGGGATGGTCCGTGGAGCGCAAGGAAGGCAAGGCAGAGGGCAAGTGCTTG
ATCGACGCGCTGGACGCGATCCTTCCACCCCAGCGTCCCACCGACAAGCC
GCTGCGCCTGCCGCTCCAGGACGTCTACAAGATCGGAGGCATCGGAACCG
TACCAGTAGGTCGTGTGGAGACTGGTCTCCTCAAGCCAGGCATGGTCGTC
AACTTTGCGCCGGTCAACCTGGTCACCGAAGTAAAGTCTGTGGAGATGCA
CCACGAGGCTCTCACCGAAGCCATGCCCGGCGACAACGTTGGCTTCAACG
TGAAGAACGTGTCCGTGAAGGAGCTCCGTCGTGGCTATGTGGCCGGCGAT
TCCAAGAACAATCCTCCTAGGGGAGCAGCCGACTTTACCGCTCAGGTGAT
TGTGCTCAACCATCCGGGCCAGATCGCCAATGGGTACACTCCCGTCTTGG
ATTGCCACACGGCGCACATTGCCTGCAAGTTTTCCGAGATCAAGGAGAAG
TGCGACCGCCGTACGGGCAAGACCACCGAGACGGAGCCGAAGGCTATCAA
GTCCGGGGATGCGGCCATCATTGTGCTGGTGCCCAGCAAGCCGTTGTGCG
TAGAGAGCTTCCAGGAGTTCCCACCGCTGGGACGGTTCGCTGTGCGCGAC
ATGAGGCAGACCGTGGCCGTGGGCGTCATCAAGTCGGTGAACTTTAAAGA
GACGACCTCGGGCAAGGTGACAAAAGCCGCTGAGAAGGCACAGAAGAAGA
AAGCAAGCTTTCTAGACCAT
BO22905.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha100E-RD | 1389 | CG1873-PD | 1..1386 | 17..1402 | 6930 | 100 | Plus |
| Ef1alpha100E-RC | 1389 | CG1873-PC | 1..1386 | 17..1402 | 6930 | 100 | Plus |
| Ef1alpha100E-RB | 1389 | CG1873-PB | 1..1386 | 17..1402 | 6930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha100E-RD | 2603 | CG1873-RD | 178..1563 | 17..1402 | 6930 | 100 | Plus |
| Ef1alpha100E-RC | 2591 | CG1873-RC | 166..1551 | 17..1402 | 6930 | 100 | Plus |
| Ef1alpha100E-RB | 2594 | CG1873-RB | 169..1554 | 17..1402 | 6930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31740347..31741170 | 17..840 | 4120 | 100 | Plus |
| 2R | 25286936 | 2R | 11893573..11894947 | 15..1389 | 3275 | 82.5 | Plus |
| 3R | 32079331 | 3R | 31741907..31742266 | 1043..1402 | 1800 | 100 | Plus |
| 3R | 32079331 | 3R | 31741624..31741834 | 837..1047 | 1055 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:07:29 has no hits.
BO22905.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:27 Download gff for
BO22905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RC | 166..1551 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:56 Download gff for
BO22905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 169..1554 | 17..1404 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:24 Download gff for
BO22905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ef1alpha100E-RB | 169..1554 | 17..1404 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:24 Download gff for
BO22905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31740347..31741169 | 17..839 | 100 | -> | Plus |
| 3R | 31741627..31741832 | 840..1045 | 100 | -> | Plus |
| 3R | 31741910..31742266 | 1046..1404 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:56 Download gff for
BO22905.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27566069..27566891 | 17..839 | 100 | -> | Plus |
| arm_3R | 27567349..27567554 | 840..1045 | 100 | -> | Plus |
| arm_3R | 27567632..27567988 | 1046..1404 | 99 | | Plus |
BO22905.pep Sequence
Translation from 16 to 1420
> BO22905.pep
MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMG
KGSFKYAWVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIK
NMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV
GVNKMDSTEPPYSEARYEEIKKEVSSYIKKIGYNPASVAFVPISGWHGDN
MLEPSEKMPWFKGWSVERKEGKAEGKCLIDALDAILPPQRPTDKPLRLPL
QDVYKIGGIGTVPVGRVETGLLKPGMVVNFAPVNLVTEVKSVEMHHEALT
EAMPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPRGAADFTAQVIVLNHP
GQIANGYTPVLDCHTAHIACKFSEIKEKCDRRTGKTTETEPKAIKSGDAA
IIVLVPSKPLCVESFQEFPPLGRFAVRDMRQTVAVGVIKSVNFKETTSGK
VTKAAEKAQKKKASFLDH
BO22905.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:55:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ef1alpha100E-PD | 462 | CG1873-PD | 1..462 | 1..462 | 2407 | 100 | Plus |
| Ef1alpha100E-PC | 462 | CG1873-PC | 1..462 | 1..462 | 2407 | 100 | Plus |
| Ef1alpha100E-PB | 462 | CG1873-PB | 1..462 | 1..462 | 2407 | 100 | Plus |
| Ef1alpha100E-PA | 462 | CG1873-PA | 1..462 | 1..462 | 2407 | 100 | Plus |
| Ef1alpha48D-PC | 463 | CG8280-PC | 1..462 | 1..462 | 2224 | 92 | Plus |
