BO22906.complete Sequence
1654 bp assembled on 2010-02-18
GenBank Submission: KX793869
> BO22906.complete
GAAGTTATCAGTCGACATGGGCATCTTACTGAGTGATGGCGATTCCACAT
CGGATCAGCAGTCGACTCGCGACTATCCCCACTTCAGCGGCGACTATCAG
AACGTGACGCTGTCGGCTGCCTCTGCATCCACATCCGCATCCGCTTCTGC
CACCCACGTCGCCGCCGTCAAGATGTACCACAGTAGCGCCGTTGCGGCAT
ACACGGACCTGGCTGCCGCCGGTAGTGCCGCAAGCGCCGGAGTCGGAGTC
GGGGTGTCCGGCTATCACCAGCAGGCGGTAAACGCTCCCGTTTACGTGCC
ATCCAACCGACAGTACAACCACGTGGCCGCTCATTTTGGAAGCGCTGCGG
CGCAGAATGCCTGGACCACGGAAGGATTCGGATCGGCGCATGCACAGTTC
TACTCGCCAAACGCCGCTGTGATGATGGGCTCGTGGCGCAGTGCCTACGA
TCCGTCGGGCTTCCAAAGATCCTCGCCCTACGAGAGCGCTATGGACTTCC
AGTTTGGCGAGGGACGCGAGTGCGTCAATTGCGGTGCCATATCGACTCCG
TTGTGGCGACGGGATGGAACCGGACACTATCTGTGCAACGCCTGCGGACT
GTACCATAAGATGAACGGAATGAACCGGCCGCTGATCAAGCCTAGCAAGC
GCCTGGTGAGTGCAACTGCCACTCGGAGGATGGGCTTGTGCTGCACCAAC
TGCGGCACTCGGACCACCACACTTTGGAGGCGCAACAACGATGGCGAACC
CGTGTGCAATGCCTGCGGACTGTACTACAAGTTGCACGGTGTTAACAGAC
CACTGGCCATGAGGAAGGATGGCATTCAGACCAGGAAACGAAAGCCCAAG
AAAACGGGAAGTGGTTCGGCGGTGGGAGCGGGCACTGGATCCGGAACAGG
CTCCACTTTGGAGGCCATCAAGGAGTGCAAGGAGGAGCATGATCTCAAAC
CCTCGCTCAGCCTGGAGCGCCATAGCCTCAGTAAGCTGCACACGGATATG
AAGAGCGGCACCAGCAGTAGTAGCACCTTGATGGGACATCACAGCGCGCA
GCAGCAGCAGCAGCAGCAACAGCAACAACAACAGCAACAGCAGCAGCAGC
AGCAGCAATCGGCACACCAACAATGCTTTCCCCTTTACGGACAGACGACG
ACGCAACAGCAGCACCAGCAACATGGCCACAGCATGACATCATCCTCTGG
ACAGGCACATCTGAGTGCCCGCCACCTTCACGGAGCGGCAGGAACGCAGC
TCTACACGCCCGGCAGCAGTTCCGGCGGAGGCAGTGCGTCTGCCTACACA
TCGCACAGTGCGGAGACGCCGGCCCTGAGCAACGGAACTCCCTCGCCCCA
TTACCAGCACCACCACCACCTCGGCGGAACCCATGGACACCATGTGACGG
CAGCGGCGGCACATCATCATTTCCATGCCGCTGCCGCTGTGGCCGCCTAC
GGCGTAAAGACAGAGGCGAGTGCCACCAACTACGACTATGTGAACAACTG
CTACTTTGGGGGCACCTTCGGTGCGCTGGGAGGAGCTGCAACCACAACCG
CCATGGCTGGCGGAGCGGCCAGTGAACTGGCTGGCTACCATCACCAGCAC
AACGTCATCCAGGCAGCCAAACTGATGGCCACCTCGGCAAGCTTTCTAGA
CCAT
BO22906.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:25:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnr-RA | 1623 | CG3978-PA | 1..1620 | 17..1636 | 8100 | 100 | Plus |
| pnr-RC | 1614 | CG3978-PC | 1..1611 | 17..1636 | 7930 | 99.4 | Plus |
| pnr-RD | 1467 | CG3978-PD | 1..1464 | 173..1636 | 7320 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:26:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnr-RA | 2720 | CG3978-RA | 494..2114 | 16..1636 | 8105 | 100 | Plus |
| pnr-RD | 3840 | CG3978-RD | 759..2353 | 42..1636 | 7975 | 100 | Plus |
| pnr-RB | 2786 | CG3978-RB | 586..2180 | 42..1636 | 7975 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:25:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16039614..16040309 | 941..1636 | 3480 | 100 | Plus |
| 3R | 32079331 | 3R | 16038587..16039207 | 44..664 | 3105 | 100 | Plus |
| 3R | 32079331 | 3R | 16039270..16039546 | 665..941 | 1385 | 100 | Plus |
| 3R | 32079331 | 3R | 8160976..8161109 | 642..509 | 370 | 85.1 | Minus |
| 3R | 32079331 | 3R | 16018047..16018168 | 731..852 | 265 | 81.1 | Plus |
Blast to na_te.dros performed 2014-11-28 04:25:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6903 | 996..1190 | 334 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2534 | 1048..1269 | 300 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6868 | 1048..1188 | 273 | 69.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6825 | 1074..1184 | 173 | 65.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1049..1165 | 1056..1171 | 159 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2469 | 1084..1245 | 148 | 58.7 | Plus |
| BS | 5142 | BS BS 5142bp | 2012..2125 | 1067..1191 | 140 | 62.4 | Plus |
BO22906.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-18 18:34:08 Download gff for
BO22906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RA | 691..2310 | 17..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:59:15 Download gff for
BO22906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RA | 495..2114 | 17..1638 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:39 Download gff for
BO22906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pnr-RA | 495..2114 | 17..1638 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:39 Download gff for
BO22906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16039270..16039546 | 665..941 | 100 | -> | Plus |
| 3R | 16035080..16035106 | 17..43 | 100 | -> | Plus |
| 3R | 16038587..16039207 | 44..664 | 100 | -> | Plus |
| 3R | 16039615..16040309 | 942..1638 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:59:15 Download gff for
BO22906.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11864992..11865268 | 665..941 | 100 | -> | Plus |
| arm_3R | 11860802..11860828 | 17..43 | 100 | -> | Plus |
| arm_3R | 11864309..11864929 | 44..664 | 100 | -> | Plus |
| arm_3R | 11865337..11866031 | 942..1638 | 99 | | Plus |
BO22906.pep Sequence
Translation from 16 to 1654
> BO22906.pep
MGILLSDGDSTSDQQSTRDYPHFSGDYQNVTLSAASASTSASASATHVAA
VKMYHSSAVAAYTDLAAAGSAASAGVGVGVSGYHQQAVNAPVYVPSNRQY
NHVAAHFGSAAAQNAWTTEGFGSAHAQFYSPNAAVMMGSWRSAYDPSGFQ
RSSPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMN
GMNRPLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNAC
GLYYKLHGVNRPLAMRKDGIQTRKRKPKKTGSGSAVGAGTGSGTGSTLEA
IKECKEEHDLKPSLSLERHSLSKLHTDMKSGTSSSSTLMGHHSAQQQQQQ
QQQQQQQQQQQQQQSAHQQCFPLYGQTTTQQQHQQHGHSMTSSSGQAHLS
ARHLHGAAGTQLYTPGSSSGGGSASAYTSHSAETPALSNGTPSPHYQHHH
HLGGTHGHHVTAAAAHHHFHAAAAVAAYGVKTEASATNYDYVNNCYFGGT
FGALGGAATTTAMAGGAASELAGYHHQHNVIQAAKLMATSASFLDH
BO22906.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:21:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pnr-PA | 540 | CG3978-PA | 1..540 | 1..540 | 2878 | 100 | Plus |
| pnr-PC | 537 | CG3978-PC | 1..537 | 1..540 | 2852 | 99.4 | Plus |
| pnr-PD | 488 | CG3978-PD | 1..488 | 53..540 | 2622 | 100 | Plus |
| pnr-PB | 488 | CG3978-PB | 1..488 | 53..540 | 2622 | 100 | Plus |
| srp-PE | 731 | CG3992-PE | 32..571 | 14..484 | 577 | 33 | Plus |
