Clone BO22933 Report

Search the DGRC for BO22933

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:229
Well:33
Vector:pDNR-Dual
Associated Gene/Transcriptpnr-RB
Protein status:BO22933.pep: full length peptide match
Sequenced Size:1498

Clone Sequence Records

BO22933.complete Sequence

1498 bp assembled on 2010-01-27

GenBank Submission: KX795168

> BO22933.complete
GAAGTTATCAGGGGACATGTACCACAGTAGCGCCGTTGCGGCATACACGG
ACCTGGCTGCCGCCGGTAGTGCCGCGAGCGCCGGAGTCGGAGTCGGGGTG
TCCGGCTATCACCAGCAGGCGGTAAACGCTCCCGTTTACGTGCCATCCAA
CCGACAGTACAACCACGTGGCCGCTCATTTTGGAAGCGCTGCGGCGCAGA
ATGCCTGGACCACGGAAGGATTCGGATCGGCGCATGCACAGTTCTACTCG
CCAAACGCCGCTGTGATGATGGGCTCGTGGCGCAGTGCCTACGATCCGTC
GGGCTTCCAAAGATCCTCGCCCTACGAGAGCGCTATGGACTTCCAGTTTG
GCGAGGGACGCGAGTGCGTCAATTGCGGTGCCATATCGACTCCGTTGTGG
CGACGGGATGGAACCGGACACTATCTGTGCAACGCCTGCGGACTGTACCA
TAAGATGAACGGAATGAACCGGCCGCTGATCAAGCCTAGCAAGCGCCTGG
TGAGTGCAACTGCCACTCGGAGGATGGGCTTGTGCTGCACCAACTGCGGC
ACTCGGACCACCACACTTTGGAGACGCAACAACGATGGCGAACCCGTGTG
CAATGCCTGCGGACTGTACTACAAGTTGCACGGTGTTAACAGACCACTGG
CCATGAGGAAGGATGGCATTCAGACCAGGAAACGAAAGCCCAAGAAAACG
GGAAGTGGTTCGGCGGTGGGAGCGGGCACTGGATCCGGAACAGGCTCCAC
TTTGGAGGCCATCAAGGAGTGCAAGGAGGAGCATGATCTCAAACCCTCGC
TCAGCCTGGAGCGCCATAGCCTCAGTAAGCTGCACACGGATATGAAGAGC
GGCACCAGCAGTAGTAGCACCTTGATGGGACATCACAGCGCGCAGCAGCA
GCAGCAGCAGCAACAGCAACAACAACAGCAACAGCAGCAGCAGCAGCAGC
AATCGGCACACCAACAATGCTTTCCCCTTTACGGACAGACGACGACGCAA
CAGCAGCACCAGCAACATGGCCACAGCATGACATCATCCTCTGGACAGGC
ACATCTGAGTGCCCGCCACCTTCACGGAGCGGCAGGAACGCAGCTCTACA
CGCCCGGCAGCAGTTCCGGCGGAGGCAGTGCGTCTGCCTACACATCGCAC
AGTGCGGAGACGCCGGCCCTGAGCAACGGAACTCCCTCGCCCCATTACCA
GCACCACCACCACCTCGGCGGAACCCATGGACACCATGTGACGGCAGCGG
CGGCACATCATCATTTCCATGCCGCTGCCGCTGTGGCCGCCTACGGCGTA
AAGACAGAGGCGAGTGCCACCAACTACGACTATGTGAACAACTGCTACTT
TGGGGGCACCTTCGGTGCGCTGGGAGGAGCTGCAACCACAACCGCCATGG
CTGGCGGAGCGGCCAGTGAACTGGCTGGCTACCATCACCAGCACAACGTC
ATCCAGGCAGCCAAACTGATGGCCACCTCGGCAAGCTTTCTAGACCAT

BO22933.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:17
Subject Length Description Subject Range Query Range Score Percent Strand
pnr-RD 1467 CG3978-PD 1..1464 17..1480 7290 99.9 Plus
pnr-RA 1623 CG3978-PA 157..1620 17..1480 7290 99.9 Plus
pnr-RB 1467 CG3978-PB 1..1464 17..1480 7290 99.9 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
pnr-RD 3840 CG3978-RD 890..2353 17..1480 7290 99.9 Plus
pnr-RA 2720 CG3978-RA 651..2114 17..1480 7290 99.9 Plus
pnr-RB 2786 CG3978-RB 717..2180 17..1480 7290 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:14
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 16039614..16040309 785..1480 3480 100 Plus
3R 32079331 3R 16038716..16039207 17..508 2445 99.8 Plus
3R 32079331 3R 16039270..16039546 509..785 1370 99.6 Plus
3R 32079331 3R 8160976..8161109 486..353 370 85.1 Minus
3R 32079331 3R 16018047..16018168 575..696 265 81.1 Plus
Blast to na_te.dros performed 2014-11-28 03:07:15
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6716..6903 840..1034 334 68.4 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2312..2534 892..1113 300 64 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6724..6868 892..1032 273 69.2 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 6720..6825 918..1028 173 65.8 Plus
roo 9092 roo DM_ROO 9092bp 1049..1165 900..1015 159 60.7 Plus
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 2306..2469 928..1089 148 58.7 Plus
BS 5142 BS BS 5142bp 2012..2125 911..1035 140 62.4 Plus

BO22933.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:22 Download gff for BO22933.complete
Subject Subject Range Query Range Percent Splice Strand
pnr-RA 847..2310 17..1482 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:49 Download gff for BO22933.complete
Subject Subject Range Query Range Percent Splice Strand
pnr-RB 717..2180 17..1482 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:20 Download gff for BO22933.complete
Subject Subject Range Query Range Percent Splice Strand
pnr-RB 717..2180 17..1482 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:20 Download gff for BO22933.complete
Subject Subject Range Query Range Percent Splice Strand
3R 16038716..16039207 17..508 99 -> Plus
3R 16039270..16039546 509..785 99 -> Plus
3R 16039615..16040309 786..1482 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:49 Download gff for BO22933.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11864438..11864929 17..508 99 -> Plus
arm_3R 11864992..11865268 509..785 99 -> Plus
arm_3R 11865337..11866031 786..1482 99   Plus

BO22933.pep Sequence

Translation from 16 to 1498

> BO22933.pep
MYHSSAVAAYTDLAAAGSAASAGVGVGVSGYHQQAVNAPVYVPSNRQYNH
VAAHFGSAAAQNAWTTEGFGSAHAQFYSPNAAVMMGSWRSAYDPSGFQRS
SPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGM
NRPLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGL
YYKLHGVNRPLAMRKDGIQTRKRKPKKTGSGSAVGAGTGSGTGSTLEAIK
ECKEEHDLKPSLSLERHSLSKLHTDMKSGTSSSSTLMGHHSAQQQQQQQQ
QQQQQQQQQQQQSAHQQCFPLYGQTTTQQQHQQHGHSMTSSSGQAHLSAR
HLHGAAGTQLYTPGSSSGGGSASAYTSHSAETPALSNGTPSPHYQHHHHL
GGTHGHHVTAAAAHHHFHAAAAVAAYGVKTEASATNYDYVNNCYFGGTFG
ALGGAATTTAMAGGAASELAGYHHQHNVIQAAKLMATSASFLDH

BO22933.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:54:44
Subject Length Description Subject Range Query Range Score Percent Strand
pnr-PD 488 CG3978-PD 1..488 1..488 2622 100 Plus
pnr-PA 540 CG3978-PA 53..540 1..488 2622 100 Plus
pnr-PB 488 CG3978-PB 1..488 1..488 2622 100 Plus
pnr-PC 537 CG3978-PC 53..537 1..488 2596 99.4 Plus
srp-PE 731 CG3992-PE 189..571 93..432 582 40.7 Plus