BO22933.complete Sequence
1498 bp assembled on 2010-01-27
GenBank Submission: KX795168
> BO22933.complete
GAAGTTATCAGGGGACATGTACCACAGTAGCGCCGTTGCGGCATACACGG
ACCTGGCTGCCGCCGGTAGTGCCGCGAGCGCCGGAGTCGGAGTCGGGGTG
TCCGGCTATCACCAGCAGGCGGTAAACGCTCCCGTTTACGTGCCATCCAA
CCGACAGTACAACCACGTGGCCGCTCATTTTGGAAGCGCTGCGGCGCAGA
ATGCCTGGACCACGGAAGGATTCGGATCGGCGCATGCACAGTTCTACTCG
CCAAACGCCGCTGTGATGATGGGCTCGTGGCGCAGTGCCTACGATCCGTC
GGGCTTCCAAAGATCCTCGCCCTACGAGAGCGCTATGGACTTCCAGTTTG
GCGAGGGACGCGAGTGCGTCAATTGCGGTGCCATATCGACTCCGTTGTGG
CGACGGGATGGAACCGGACACTATCTGTGCAACGCCTGCGGACTGTACCA
TAAGATGAACGGAATGAACCGGCCGCTGATCAAGCCTAGCAAGCGCCTGG
TGAGTGCAACTGCCACTCGGAGGATGGGCTTGTGCTGCACCAACTGCGGC
ACTCGGACCACCACACTTTGGAGACGCAACAACGATGGCGAACCCGTGTG
CAATGCCTGCGGACTGTACTACAAGTTGCACGGTGTTAACAGACCACTGG
CCATGAGGAAGGATGGCATTCAGACCAGGAAACGAAAGCCCAAGAAAACG
GGAAGTGGTTCGGCGGTGGGAGCGGGCACTGGATCCGGAACAGGCTCCAC
TTTGGAGGCCATCAAGGAGTGCAAGGAGGAGCATGATCTCAAACCCTCGC
TCAGCCTGGAGCGCCATAGCCTCAGTAAGCTGCACACGGATATGAAGAGC
GGCACCAGCAGTAGTAGCACCTTGATGGGACATCACAGCGCGCAGCAGCA
GCAGCAGCAGCAACAGCAACAACAACAGCAACAGCAGCAGCAGCAGCAGC
AATCGGCACACCAACAATGCTTTCCCCTTTACGGACAGACGACGACGCAA
CAGCAGCACCAGCAACATGGCCACAGCATGACATCATCCTCTGGACAGGC
ACATCTGAGTGCCCGCCACCTTCACGGAGCGGCAGGAACGCAGCTCTACA
CGCCCGGCAGCAGTTCCGGCGGAGGCAGTGCGTCTGCCTACACATCGCAC
AGTGCGGAGACGCCGGCCCTGAGCAACGGAACTCCCTCGCCCCATTACCA
GCACCACCACCACCTCGGCGGAACCCATGGACACCATGTGACGGCAGCGG
CGGCACATCATCATTTCCATGCCGCTGCCGCTGTGGCCGCCTACGGCGTA
AAGACAGAGGCGAGTGCCACCAACTACGACTATGTGAACAACTGCTACTT
TGGGGGCACCTTCGGTGCGCTGGGAGGAGCTGCAACCACAACCGCCATGG
CTGGCGGAGCGGCCAGTGAACTGGCTGGCTACCATCACCAGCACAACGTC
ATCCAGGCAGCCAAACTGATGGCCACCTCGGCAAGCTTTCTAGACCAT
BO22933.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:07:17
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pnr-RD | 1467 | CG3978-PD | 1..1464 | 17..1480 | 7290 | 99.9 | Plus |
pnr-RA | 1623 | CG3978-PA | 157..1620 | 17..1480 | 7290 | 99.9 | Plus |
pnr-RB | 1467 | CG3978-PB | 1..1464 | 17..1480 | 7290 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pnr-RD | 3840 | CG3978-RD | 890..2353 | 17..1480 | 7290 | 99.9 | Plus |
pnr-RA | 2720 | CG3978-RA | 651..2114 | 17..1480 | 7290 | 99.9 | Plus |
pnr-RB | 2786 | CG3978-RB | 717..2180 | 17..1480 | 7290 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:07:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 16039614..16040309 | 785..1480 | 3480 | 100 | Plus |
3R | 32079331 | 3R | 16038716..16039207 | 17..508 | 2445 | 99.8 | Plus |
3R | 32079331 | 3R | 16039270..16039546 | 509..785 | 1370 | 99.6 | Plus |
3R | 32079331 | 3R | 8160976..8161109 | 486..353 | 370 | 85.1 | Minus |
3R | 32079331 | 3R | 16018047..16018168 | 575..696 | 265 | 81.1 | Plus |
Blast to na_te.dros performed 2014-11-28 03:07:15
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6716..6903 | 840..1034 | 334 | 68.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2312..2534 | 892..1113 | 300 | 64 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6724..6868 | 892..1032 | 273 | 69.2 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6825 | 918..1028 | 173 | 65.8 | Plus |
roo | 9092 | roo DM_ROO 9092bp | 1049..1165 | 900..1015 | 159 | 60.7 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2306..2469 | 928..1089 | 148 | 58.7 | Plus |
BS | 5142 | BS BS 5142bp | 2012..2125 | 911..1035 | 140 | 62.4 | Plus |
BO22933.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:22 Download gff for
BO22933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pnr-RA | 847..2310 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:49 Download gff for
BO22933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pnr-RB | 717..2180 | 17..1482 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:20 Download gff for
BO22933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
pnr-RB | 717..2180 | 17..1482 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:20 Download gff for
BO22933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 16038716..16039207 | 17..508 | 99 | -> | Plus |
3R | 16039270..16039546 | 509..785 | 99 | -> | Plus |
3R | 16039615..16040309 | 786..1482 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:49 Download gff for
BO22933.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11864438..11864929 | 17..508 | 99 | -> | Plus |
arm_3R | 11864992..11865268 | 509..785 | 99 | -> | Plus |
arm_3R | 11865337..11866031 | 786..1482 | 99 | | Plus |
BO22933.pep Sequence
Translation from 16 to 1498
> BO22933.pep
MYHSSAVAAYTDLAAAGSAASAGVGVGVSGYHQQAVNAPVYVPSNRQYNH
VAAHFGSAAAQNAWTTEGFGSAHAQFYSPNAAVMMGSWRSAYDPSGFQRS
SPYESAMDFQFGEGRECVNCGAISTPLWRRDGTGHYLCNACGLYHKMNGM
NRPLIKPSKRLVSATATRRMGLCCTNCGTRTTTLWRRNNDGEPVCNACGL
YYKLHGVNRPLAMRKDGIQTRKRKPKKTGSGSAVGAGTGSGTGSTLEAIK
ECKEEHDLKPSLSLERHSLSKLHTDMKSGTSSSSTLMGHHSAQQQQQQQQ
QQQQQQQQQQQQSAHQQCFPLYGQTTTQQQHQQHGHSMTSSSGQAHLSAR
HLHGAAGTQLYTPGSSSGGGSASAYTSHSAETPALSNGTPSPHYQHHHHL
GGTHGHHVTAAAAHHHFHAAAAVAAYGVKTEASATNYDYVNNCYFGGTFG
ALGGAATTTAMAGGAASELAGYHHQHNVIQAAKLMATSASFLDH
BO22933.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:54:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
pnr-PD | 488 | CG3978-PD | 1..488 | 1..488 | 2622 | 100 | Plus |
pnr-PA | 540 | CG3978-PA | 53..540 | 1..488 | 2622 | 100 | Plus |
pnr-PB | 488 | CG3978-PB | 1..488 | 1..488 | 2622 | 100 | Plus |
pnr-PC | 537 | CG3978-PC | 53..537 | 1..488 | 2596 | 99.4 | Plus |
srp-PE | 731 | CG3992-PE | 189..571 | 93..432 | 582 | 40.7 | Plus |