BO22938.complete Sequence
1948 bp assembled on 2010-02-18
GenBank Submission: KX798092
> BO22938.complete
GAAGTTATCAGTCGACATGCGCCACAATTCGCCAGTGTCCCGGGAGCGAG
CCAGCGAGGCAGCGGCAGCCACTCAGACAGCAGCAGCCACAGCGGGAGGA
GCAACTGCCCACTCAGCCGGAGGAACTGCGGGAGGATCTGCAGCAGCGAC
GACAACGGCTGGAGGGGCCACGTCCGGATCCGGAACAGCCTCGGCGAACA
CGAACAGCAATTCCTCGGCCTCATCCAGCACAGTGGCAGCTGCACAGGCG
GCTGTCTACAGCGGCGGCAACACGGTGACCGGAAGTTTGGGCAGCGCCGG
GGTGGTGGCTCGTGGCTTCCGCAGCCACAGTCCCACCCACCGGCGGAGGA
GTCGCGAGCGCCAGCGACGTACGCATGGCTCTGATCAGGGCGGTCTGCTG
GCCTACAGCGGTCTCGTTGGCGTCAACGACATGACGGATTTCTTGGGTCC
ACAGCAGGGCGGAGGAGGAGGTGGCGGTGGTGGTGGTGGCGGTGGTGGTG
GTGGTGGAAGCGCCGGCACGGGCAGTGGTCTGGAGGATTCCCGCCTCAGT
GGCAACGAGGACTACTACTCGTCCTTCGTCTCTGACGAGTTTGACAGCAG
CAAGAAGGTCCATCGCCGCTGCCACGAACGCAGCTCCAGCGTTCAGGCCA
TCGACCGATTGAACACGAAGATCCAATGCACCAAGGAGTCCATCCGACAG
GAGCAAACTGCCAGAGACGATAATGTCAACGAGTATCTTAAGTTGGCAGC
CAGTGCAGACAAGCAGCAGCTGCAGCGCATCAAGGCTGTCTTTGAGAAAA
AGAACCAGAAGAGCGCACACAATATCTCGCAGCTGCAGAAAAAGCTGGAC
AACTACACGAAGCGGGCCAAGGACTTGCAGAATCACCAGTTCCAGACGAA
GAGCCAGCACCGTCAACCGCGCGAGGTGCTGCGGGATGTCGGCCAGGGTC
TGCGCAACGTGGGAGGCAACATCCGCGATGGCATCACCGGCTTCTCCGGT
TCGGTGATGTCCAAGCCACGGGAGTTTGCGCACTTGATCAAGAACAAGTT
TGGCAGCGCCGACAACATCAACCAGATGAGCGAGGCCGAACTACAGGGCA
TGCAGTCTGCCAATGCCGATGTTTTGGGCAGCGAGCGTTTGCAGCAAGTG
CCTGGAGCCGGAACCTCGACGGGCTCAGGCGGCGGCGGGCAGAACAACAA
CACCGGCGGAGCGGGAAGCGGGACGGGAAAGTTCAACAGTGACAATGGCA
GCGAATGCAGCAGCGTAACGAGCGAAAGCATACCGGGAGGGTCTGGTAAA
AGCCAGTCGGGAGCCAGCCAATACCACATAGTGCTCAAGACATTGCTAAC
AGAGCTGGCCGAGCGAAAGGCCGAAAACGAGAAGCTCAAGGAGCGCATCG
AACGACTCGAGACGGGCCAAAAGGAATTCAACAATCTGACCGCCACACTC
GAAAGTGAACGCTATCGTGCCGAGGGACTCGAGGAGCAAATCAATGACTT
GACGGAATTACATCAGAATGAAATTGAGAATCTGAAACAAACGATTGCCG
ACATGGAGGAGAAAGTACAATACCAAAGCGATGAAAGACTACGTGACGTC
AACGAAGTGCTCGAGAACTGTCAAACGAGGATATCAAAAATGGAGCACAT
GTCGCAGCAACAATATGTCACCGTCGAGGGCATTGATAATTCGAATGCGC
GGGCCTTGGTTGTGAAACTCATCAATGTGGTATTAACGATACTGCAAGTG
GTGCTCCTGCTTGTGGCCACCGCTGCAGGCATCATAATGCCTTTTCTCAA
AACGAGGGTTCGCGTTCTCACAACGTTTTTGTCTATTTGTTTCGTCATCT
TTGTGATACGACAGTGGCCGGATGTCCAGGACATTGGATCCGGCCTGGTG
CGACATCTCAAGCAATCGCTGGTGGTGAAGGCAAGCTTTCTAGACCAT
BO22938.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:23:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmtn-RE | 1917 | CG1021-PE | 1..1914 | 17..1930 | 9570 | 100 | Plus |
| Dmtn-RD | 1917 | CG1021-PD | 1..1914 | 17..1930 | 9570 | 100 | Plus |
| Dmtn-RF | 1917 | CG1021-PF | 1..1914 | 17..1930 | 9570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:23:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmtn-RE | 3463 | CG1021-RE | 1150..3063 | 17..1930 | 9570 | 100 | Plus |
| Dmtn-RD | 3827 | CG1021-RD | 1514..3427 | 17..1930 | 9570 | 100 | Plus |
| Dmtn-RF | 3747 | CG1021-RF | 1434..3347 | 17..1930 | 9570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:23:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6391305..6392007 | 719..17 | 3515 | 100 | Minus |
| 3R | 32079331 | 3R | 6390586..6391095 | 1292..783 | 2550 | 100 | Minus |
| 3R | 32079331 | 3R | 6389757..6389934 | 1807..1630 | 890 | 100 | Minus |
| 3R | 32079331 | 3R | 6389562..6389687 | 1930..1805 | 630 | 100 | Minus |
| 3R | 32079331 | 3R | 6390389..6390510 | 1411..1290 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 6390011..6390127 | 1630..1514 | 585 | 100 | Minus |
| 3R | 32079331 | 3R | 6390202..6390308 | 1516..1410 | 535 | 100 | Minus |
| 3R | 32079331 | 3R | 6391160..6391226 | 785..719 | 335 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:23:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6897 | 59..209 | 192 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6683..6910 | 25..254 | 190 | 56.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2518 | 59..244 | 179 | 59.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6782..6942 | 52..209 | 176 | 58.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6831..6956 | 61..192 | 169 | 61.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..6956 | 59..237 | 166 | 57.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1063..1157 | 59..159 | 150 | 63.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2796..2929 | 52..178 | 140 | 59.7 | Plus |
| Dsub\bilbo | 5540 | Dsub\bilbo 5540bp Derived from U73803 (Rel. 54, Last updated, Version 1). | 5138..5202 | 80..16 | 127 | 66.2 | Minus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 598..708 | 167..59 | 118 | 57.7 | Minus |
BO22938.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-18 18:33:57 Download gff for
BO22938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1021-RE | 1146..3059 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:02 Download gff for
BO22938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dmtn-RF | 1434..3347 | 17..1932 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:27:15 Download gff for
BO22938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Dmtn-RF | 1434..3347 | 17..1932 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:27:15 Download gff for
BO22938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6390389..6390509 | 1291..1411 | 100 | <- | Minus |
| 3R | 6389560..6389685 | 1807..1932 | 98 | <- | Minus |
| 3R | 6389758..6389933 | 1631..1806 | 100 | <- | Minus |
| 3R | 6390011..6390124 | 1517..1630 | 100 | <- | Minus |
| 3R | 6390202..6390306 | 1412..1516 | 100 | <- | Minus |
| 3R | 6390588..6391093 | 785..1290 | 100 | <- | Minus |
| 3R | 6391161..6391225 | 720..784 | 100 | <- | Minus |
| 3R | 6391305..6392007 | 17..719 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:02 Download gff for
BO22938.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2215282..2215407 | 1807..1932 | 98 | <- | Minus |
| arm_3R | 2215480..2215655 | 1631..1806 | 100 | <- | Minus |
| arm_3R | 2215733..2215846 | 1517..1630 | 100 | <- | Minus |
| arm_3R | 2215924..2216028 | 1412..1516 | 100 | <- | Minus |
| arm_3R | 2216111..2216231 | 1291..1411 | 100 | <- | Minus |
| arm_3R | 2216310..2216815 | 785..1290 | 100 | <- | Minus |
| arm_3R | 2216883..2216947 | 720..784 | 100 | <- | Minus |
| arm_3R | 2217027..2217729 | 17..719 | 100 | | Minus |
BO22938.pep Sequence
Translation from 16 to 1948
> BO22938.pep
MRHNSPVSRERASEAAAATQTAAATAGGATAHSAGGTAGGSAAATTTAGG
ATSGSGTASANTNSNSSASSSTVAAAQAAVYSGGNTVTGSLGSAGVVARG
FRSHSPTHRRRSRERQRRTHGSDQGGLLAYSGLVGVNDMTDFLGPQQGGG
GGGGGGGGGGGGGGSAGTGSGLEDSRLSGNEDYYSSFVSDEFDSSKKVHR
RCHERSSSVQAIDRLNTKIQCTKESIRQEQTARDDNVNEYLKLAASADKQ
QLQRIKAVFEKKNQKSAHNISQLQKKLDNYTKRAKDLQNHQFQTKSQHRQ
PREVLRDVGQGLRNVGGNIRDGITGFSGSVMSKPREFAHLIKNKFGSADN
INQMSEAELQGMQSANADVLGSERLQQVPGAGTSTGSGGGGQNNNTGGAG
SGTGKFNSDNGSECSSVTSESIPGGSGKSQSGASQYHIVLKTLLTELAER
KAENEKLKERIERLETGQKEFNNLTATLESERYRAEGLEEQINDLTELHQ
NEIENLKQTIADMEEKVQYQSDERLRDVNEVLENCQTRISKMEHMSQQQY
VTVEGIDNSNARALVVKLINVVLTILQVVLLLVATAAGIIMPFLKTRVRV
LTTFLSICFVIFVIRQWPDVQDIGSGLVRHLKQSLVVKASFLDH
BO22938.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:20:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dmtn-PE | 638 | CG1021-PE | 1..638 | 1..638 | 3215 | 100 | Plus |
| Dmtn-PD | 638 | CG1021-PD | 1..638 | 1..638 | 3215 | 100 | Plus |
| Dmtn-PF | 638 | CG1021-PF | 1..638 | 1..638 | 3215 | 100 | Plus |
| Dmtn-PH | 679 | CG1021-PH | 43..679 | 2..638 | 3180 | 99.2 | Plus |
| Dmtn-PG | 500 | CG1021-PG | 1..500 | 139..638 | 2535 | 100 | Plus |
