BO22942.complete Sequence
2821 bp assembled on 2010-02-18
GenBank Submission: KX797460
> BO22942.complete
GAAGTTATCAGTCGACATGGAAAAGAAGTTGGCAAAGGTGGCCCTGAATA
GCAGCAACGTAGCAACGGAAAGCAATATTAAGAATAATAAATTGTTAGCT
AATTTAAGTGCGGCAGGAGCAGCTACAGCTACAACGGCAACAACAGGAAC
AGCAACAACAACGACGGCGACAACAGCGAATCAAGCGCTGAATTTCAATA
ACAAAACGAAAGCAACAGCAAACGCGACTGCAGCATCGGCGAATAATCGG
CACAATAACAACAACAATTCCAGTGCGATCAAGAAGCACACAAATACGAA
ACAACTAGCTGGCAAGAGCCCCGCGTGCAACTCCTCCTCCTCGTCGCTCT
CCTCGTCGAGCAGCTCCAACTCGAGCGAGTCGAAGGACACGAACTTTGAG
TACGAGGACGAGTGGAATATTGGCGGCATACCAGAGCTGCTGGACGACTT
GGACGCGGATATTGAGAAGTCCGCGCATTCTTCGGGTGGTGGCAACCAGG
CTACCGCGCTAAATGCCAAGCAGGCAAACAGCTCCTCCACATCCTCCTCA
TCATCCTCCAAGGGCGGCGCTTCATCCTCGTCATCCTCAGCAGCAGCGAC
GGGATCATCATCGTCGCATAAATCGCACAAAACCACATTGCACAGCAATT
TGTCGGCCACATCGCCAACCACAATTAAGTTCACACGCCAACCGGTGGCC
ATTGGCGGAGCTAACTCCTCCTCATCTTCATCAGCAGCTGCAGCGCCCAG
TGGTGGCAGCGCGAACGTGGTGGCCAAGGGATCATCTTCTTCCTCGTCCT
CCACATCTTCCTCATCTTCGGGGAAGCATCATCACCATCACCACCATCAC
TCAAACTCAAGCAGCAGTGGAAGCAGTTCCAAGGGCTACAAGTCCGCTTT
GGTGGCTCAACTGAACAGTCCGAGTCCACTGAACAGTAACTCCAAGTCCC
TGAGTGGATCGGGGAGTGGAAGCGGGAACACAAACGGAGCAGCGGGAGCT
GGAGCCGGCAGCACATTGTCATCCTCGACATTTGCCGGTTTCTCCAAAGG
CGGCAGCTTAGTGTCTTCGTCGGCAGGAGCAGCAGCGGCTTTAGCGGCTG
GCAGTGGACAACAGGGCTCCAAATTCTCCGCTGGCGGCATGTCCTCGCAA
ACGGGCAGCGGCAGCGGCGGCAACAACACTAGCAATAGCAACAACAGCAG
CAGCGGAAGCGGAGGCAGCGGCTCAGGTAGCAGCACAGGGAACACCGCCA
GCGGTAGCGGGAACAACAACAGCACAAGTGCCGGTGGGCCGCCGAGTTCG
CAAGGCGGCAACAACGGAAACGGTAGCGGTAGCAGCTCCAGCTCCTCCAG
TGGTAAATCGAGCGCAAAGATGTCCATAGACCACCAAGCGACGCTCGACA
AAGGACTCAAAATGAAGATCAAGCGCACCAAGCCGGGCACCAAAAGCTCG
GAGGCCAAACACGAGATTGTGAAGGCCACCGATCAGCAACAGAACGGAGC
CCTGGGCGCCGGATCCAATAACTCGGCCAACGAGGATGGGAGTTCCGGTT
CCAGTTCCACCAACGCGTCTTCCCTGGGGAGCACCAATTCATCGAGCAGC
GCAAGCAGCGGCAGCTCCTCCAGCAGCGGCAGTTCTTCGAGCAGCAGCAA
GAAGCACCTAAACAATGCCAGTAGCGGTAGTGGCTCCTCCTCTTCCGGAG
GAGGGAGCCAAAACAATGCCAGTGGCCATGCCAGCGGAGGGGGATCCTCC
GGTAGCAGTCAGTCTACGCCGCAGGGCACTAAGCGCGGTAGTTCGGGTCA
TCGGCGTGAGAAGACCAAGGACAAGAACGCACATTCCAATCGCATGTCCG
TGGACAAGTCAGCAGCTGCTGCCTCGGCGGCCGGCGAGAAGGATACACCT
GAGAAGTGTTCCGGTACGGGAGCTGGTGGATCTCCCTGCTCCTGCAACGG
AGATGTGGGAGCTCCTTGCTCACATCATGCCTGCATTCGCCGTGCCGCAC
ACATGTCCAACTCCGCAGGCAATGCGAATTCGAGTGCCGGCACTGGGCAA
TCCGGTGGTTCATCCTCCATGTCAGCAGTGCCACCGGGTGTGTTCACACC
TTCAGCGGGCTCTCCTTCCACCGGTTCACCATCGACCGTGGTGCCTGCCG
CTGCCTCACTTCTGGCAGCGACCGGAGCAGCCTCCTCCTCCGCCTCTCAA
ATGGCCAGCAGTAGTGCCGGCGGCGTTGGCGGTTCGGGAGGAGGTGCCAA
TGCACCAGGACCGCCGGGTAAGGAGTCTGCCGGCAGCATCAAAATCTCCT
CGCACATTGCCGCCCAACTGGCAGCAGCGGCCGCTTCCAATAGTTACAGC
GGGAGTGGAGCCAACACGAATCAAGGCCAGAACAGCAATGCTGGCGGCAA
CGGCGGTTCGGAGAGCAAAGCAGCAGCGGCTGCTCAGGCCAAGTTAATGG
CACCCGGCATGATCTCAGCCACCATGCACCATACGATCTCGGTGCCGGCG
GGCACAGGAACAGGCGACGACGATACCAAATCTCCGCCTGCCAAAAGGGT
CAAGCATGAGGCTGGCGCTAGTGGAGCAGGAGGCGGCAAGGAGATGGTGG
ACATCTGCATTGGCACCTCGGTGGGCACCATCACCGAACCGGACTGCCTG
GGTCCCTGCGAACCTGGCACTTCCGTAACCCTCGAAGGGATTGTGTGGCA
CGAGACCGAAGGCGGCGTTCTCGTGGTCAATGTCACGTGGCGGGGCAAGA
CCTACGTGGGCACTCTGCTAGACTGCACCCGACACGATTGGGCTCCTCCA
AGGGCAAGCTTTCTAGACCAT
BO22942.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:22:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sbb-RE | 2790 | CG5580-PE | 1..2787 | 17..2803 | 13935 | 100 | Plus |
| sbb-RC | 2790 | CG5580-PC | 1..2787 | 17..2803 | 13935 | 100 | Plus |
| sbb-RH | 6909 | CG5580-PH | 1..2786 | 17..2802 | 13930 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:22:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sbb-RE | 5159 | CG5580-RE | 2261..5047 | 17..2803 | 13935 | 100 | Plus |
| sbb-RC | 3080 | CG5580-RC | 182..2968 | 17..2803 | 13935 | 100 | Plus |
| sbb-RH | 8128 | CG5580-RH | 182..2967 | 17..2802 | 13930 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:21:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 18285236..18287739 | 2803..300 | 12520 | 100 | Minus |
| 2R | 25286936 | 2R | 18288127..18288390 | 299..36 | 1320 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 04:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6736..6925 | 1155..1344 | 284 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2305..2527 | 1154..1370 | 255 | 60 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6876 | 1155..1274 | 240 | 66.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6898 | 1162..1350 | 233 | 62.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2438..2653 | 51..266 | 231 | 60.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6734..6940 | 114..326 | 229 | 61.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6805..6932 | 1155..1282 | 226 | 64.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2307..2483 | 1177..1350 | 220 | 59.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6949 | 50..295 | 220 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2327..2527 | 1155..1349 | 216 | 59.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6899 | 1155..1281 | 212 | 65.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2779..2899 | 1150..1274 | 210 | 65.6 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1161 | 1172..1274 | 191 | 65 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6874 | 1174..1350 | 186 | 61.5 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 505..682 | 94..267 | 178 | 58.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1480..1587 | 1101..1210 | 175 | 64.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2369..2482 | 1155..1274 | 173 | 62.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6823..6951 | 1147..1274 | 165 | 59.7 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1084..1144 | 1155..1212 | 163 | 77 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1096..1167 | 1155..1226 | 162 | 69.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6713..6871 | 138..300 | 156 | 60.2 | Plus |
| Dmer\R1A3 | 3772 | Dmer\R1A3 MERCR1A3 3772bp | 641..721 | 1267..1187 | 152 | 68.3 | Minus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 972..1073 | 1162..1264 | 151 | 64.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6856..6944 | 1147..1234 | 145 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2772..2889 | 1156..1270 | 143 | 62 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2766..2934 | 1168..1342 | 142 | 54.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6856 | 1216..1350 | 134 | 57.4 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1059..1141 | 1202..1283 | 133 | 63.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6856..6925 | 1155..1224 | 125 | 64.3 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1046..1162 | 1234..1350 | 125 | 58.5 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 127..194 | 1155..1222 | 124 | 64.7 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9157..9224 | 1155..1222 | 124 | 64.7 | Plus |
| ZAM | 8435 | ZAM DMZAM 8435bp Derived from AJ000387 (e1237231) ((Rel. 54, Last updated, Version 1). | 2642..2684 | 252..294 | 116 | 74.4 | Plus |
BO22942.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-18 18:33:55 Download gff for
BO22942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sbb-RC | 171..2957 | 17..2805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:57:41 Download gff for
BO22942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sbb-RC | 182..2968 | 17..2805 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:26:48 Download gff for
BO22942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sbb-RC | 182..2968 | 17..2805 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:26:48 Download gff for
BO22942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 18285233..18287739 | 300..2805 | 99 | <- | Minus |
| 2R | 18288127..18288388 | 38..299 | 100 | <- | Minus |
| 2R | 18288560..18288580 | 17..37 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:57:41 Download gff for
BO22942.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 14172738..14175244 | 300..2805 | 99 | <- | Minus |
| arm_2R | 14175632..14175893 | 38..299 | 100 | <- | Minus |
| arm_2R | 14176065..14176085 | 17..37 | 100 | | Minus |
BO22942.pep Sequence
Translation from 16 to 2821
> BO22942.pep
MEKKLAKVALNSSNVATESNIKNNKLLANLSAAGAATATTATTGTATTTT
ATTANQALNFNNKTKATANATAASANNRHNNNNNSSAIKKHTNTKQLAGK
SPACNSSSSSLSSSSSSNSSESKDTNFEYEDEWNIGGIPELLDDLDADIE
KSAHSSGGGNQATALNAKQANSSSTSSSSSSKGGASSSSSSAAATGSSSS
HKSHKTTLHSNLSATSPTTIKFTRQPVAIGGANSSSSSSAAAAPSGGSAN
VVAKGSSSSSSSTSSSSSGKHHHHHHHHSNSSSSGSSSKGYKSALVAQLN
SPSPLNSNSKSLSGSGSGSGNTNGAAGAGAGSTLSSSTFAGFSKGGSLVS
SSAGAAAALAAGSGQQGSKFSAGGMSSQTGSGSGGNNTSNSNNSSSGSGG
SGSGSSTGNTASGSGNNNSTSAGGPPSSQGGNNGNGSGSSSSSSSGKSSA
KMSIDHQATLDKGLKMKIKRTKPGTKSSEAKHEIVKATDQQQNGALGAGS
NNSANEDGSSGSSSTNASSLGSTNSSSSASSGSSSSSGSSSSSSKKHLNN
ASSGSGSSSSGGGSQNNASGHASGGGSSGSSQSTPQGTKRGSSGHRREKT
KDKNAHSNRMSVDKSAAAASAAGEKDTPEKCSGTGAGGSPCSCNGDVGAP
CSHHACIRRAAHMSNSAGNANSSAGTGQSGGSSSMSAVPPGVFTPSAGSP
STGSPSTVVPAAASLLAATGAASSSASQMASSSAGGVGGSGGGANAPGPP
GKESAGSIKISSHIAAQLAAAAASNSYSGSGANTNQGQNSNAGGNGGSES
KAAAAAQAKLMAPGMISATMHHTISVPAGTGTGDDDTKSPPAKRVKHEAG
ASGAGGGKEMVDICIGTSVGTITEPDCLGPCEPGTSVTLEGIVWHETEGG
VLVVNVTWRGKTYVGTLLDCTRHDWAPPRASFLDH
BO22942.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:20:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sbb-PH | 2302 | CG5580-PH | 1..929 | 1..929 | 4669 | 100 | Plus |
| sbb-PE | 929 | CG5580-PE | 1..929 | 1..929 | 4669 | 100 | Plus |
| sbb-PD | 2302 | CG5580-PD | 1..929 | 1..929 | 4669 | 100 | Plus |
| sbb-PC | 929 | CG5580-PC | 1..929 | 1..929 | 4669 | 100 | Plus |
| sbb-PJ | 2330 | CG5580-PJ | 17..939 | 7..929 | 4641 | 100 | Plus |
