BO22949.complete Sequence
535 bp assembled on 2010-01-27
GenBank Submission: KX794034
> BO22949.complete
GAAGTTATCAGTCGACATGGTTACTCCCACCATCAAGCTTGAGTCCTCGG
AAGGGGTGATCTTTCCGACGGAAGTCCGAGTCGCCATGGTCTCCGAAACC
ATCAAGACCATGTTGGATCACTTTGCCGTGCAGAACGACGAGAATGCCAT
CGTGCCCCTGCACTCGGTGAGCACGTTCACCCTGGGCAAGATTCTAGCCT
GGGCCAATCACCACAAGGACGATGATGATCAGTCAACGGAGGGTGAGGAG
CTGAAGCCACGTCGCCCATATGCCATCTCCCCATGGGACGCCATCTTCTT
GATGGTCAATTCAACCACCTTGCTCGAAATCATACTGGCCGCCAAACAAC
TGCAGATCAAGGGCCTACTGGAACTCACCTACAATGTGGTGGCCAATATG
ATTAGGGGCAAGACTCCCGAGGAGATCCGCTTCATCTTCAACATTCCGGA
AGACGTCTCGCCATCCGTGGACGGGGAGTTGAGATGGAAAGACCTGTTTT
TGTGGCCCATGGATTTCGCAAGCTTTCTAGACCAT
BO22949.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 03:06:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpE-RA | 504 | CG11942-PA | 1..501 | 17..517 | 2505 | 100 | Plus |
| SkpC-RA | 477 | CG11941-PA | 1..434 | 17..450 | 970 | 81.6 | Plus |
| SkpD-RA | 477 | CG12700-PA | 1..414 | 17..430 | 915 | 81.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:06:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpE-RA | 713 | CG11942-RA | 82..582 | 17..517 | 2505 | 100 | Plus |
| SkpC-RA | 629 | CG11941-RA | 67..500 | 17..450 | 970 | 81.6 | Plus |
| SkpD-RA | 656 | CG12700-RA | 73..486 | 17..430 | 915 | 81.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 03:06:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 19823499..19823999 | 517..17 | 2505 | 100 | Minus |
| X | 23542271 | X | 19816138..19816571 | 17..450 | 970 | 81.6 | Plus |
| X | 23542271 | X | 19812801..19813214 | 17..430 | 915 | 81.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 03:06:34 has no hits.
BO22949.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-09 10:04:04 Download gff for
BO22949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpE-RA | 1..501 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:35:27 Download gff for
BO22949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpE-RA | 1..501 | 17..519 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:43:02 Download gff for
BO22949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpE-RA | 82..582 | 17..519 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:43:02 Download gff for
BO22949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 19823496..19823999 | 17..519 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:35:27 Download gff for
BO22949.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 19717529..19718032 | 17..519 | 99 | | Minus |
BO22949.pep Sequence
Translation from 16 to 535
> BO22949.pep
MVTPTIKLESSEGVIFPTEVRVAMVSETIKTMLDHFAVQNDENAIVPLHS
VSTFTLGKILAWANHHKDDDDQSTEGEELKPRRPYAISPWDAIFLMVNST
TLLEIILAAKQLQIKGLLELTYNVVANMIRGKTPEEIRFIFNIPEDVSPS
VDGELRWKDLFLWPMDFASFLDH
BO22949.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:53:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpE-PA | 167 | CG11942-PA | 1..167 | 1..167 | 863 | 100 | Plus |
| SkpD-PA | 158 | CG12700-PA | 1..147 | 1..147 | 471 | 63.9 | Plus |
| SkpC-PA | 158 | CG11941-PA | 1..154 | 1..155 | 469 | 62.6 | Plus |
| SkpA-PI | 162 | CG16983-PI | 2..153 | 4..156 | 399 | 54.9 | Plus |
| SkpA-PH | 162 | CG16983-PH | 2..153 | 4..156 | 399 | 54.9 | Plus |
