BO22972.complete Sequence
1963 bp assembled on 2010-02-18
GenBank Submission: KX796427
> BO22972.complete
GAAGTTATCAGTCGACATGAAGATGGCATCTCAACGCTTCTGCCTGCGGT
GGAACAACCACCAGAGCAACCTTCTGTCCGTCTTCGACCAGCTGTTGCAC
GCAGAAACCTTCACAGATGTGACGCTGGCCGTCGAGGGGCAACACCTGAA
GGCACACAAGATGGTGCTATCCGCCTGCAGTCCCTACTTTAATACCCTCT
TTGTAAGTCATCCGGAAAAGCATCCGATTGTCATACTTAAGGATGTGCCC
TACTCGGACATGAAGTCGTTGCTAGACTTTATGTACAGGGGCGAGGTCTC
AGTGGACCAGGAGCGACTCACTGCATTCCTGCGCGTGGCCGAGAGCCTGC
GCATCAAGGGCCTCACCGAGGTCAACGACGACAAGCCCTCGCCGGCAGCA
GCAGCTGCAGGAGCGGGTGCGACGGGCTCTGAGAGCACAGCCACTACACC
CCAGCTGCAGCGCATCCAACCGTATTTGGTGCCCCAGCGGAATCGCTCGC
AGGCCGGCGGTCTGCTGGCCAGTGCCGCCAATGCCGGAAATACACCCACC
CTGCCGGTGCAGCCATCGCTGCTCAGCTCGGCCCTGATGCCCAAGCGAAA
GAGGGGCAGACCCCGGAAGCTATCTGGCAGCTCGAATGGCACGGGGAACG
ACTACGACGACTTTGATCGCGAGAACATGATGAACGACTCCTCCGACCTG
GGCAACGGCAAAATGTGCAACGAGTCCTACTCCGGCAATGACGATGGCTC
CGACGACAATCAGCCGAACGCAGGACACACGGATGATCTAAATGAAAGTC
GCGATTCTCTGCCCTCGAAACGATCAAAGAACTCCAAGGATCACCGCGTG
GTGAGCCATCATGAAGACAACAGCACTTCCGACGGAAACGACAGCGATGG
CGAAGGTCTGGACACATCATATATGGAACCTCAACTTATGCTGGACGAAT
ATGACGAGCCCGTAGAGTTCAAGTACAACCCGCTCACCGACAACAGCTCA
CCCACGCAGGACCACACGGATGGTAGTCACCTCAACGAGCAGGCGCGCCA
ACAAGCCTTCCTCATCGCTGCCCAGAGAAAACACCAGGTGGAAACAGCAG
CAGCGGCGGCGGCCAGCGGAATCAAACTTAACATTATCGGAATGGCGGCT
GGTGGAGCGCAGGTGAAAAGCATGGTCAGCATACCCAAACTAACGCCCAT
TGGCAAGGTCAACGCCGCCTCCACGCCATTGGTCTCGCCTGCCGGCTCCT
TTTCCACAGCCACGGTCAAGCCGCGCGTCCAGAAGCGGCCCAAACTGGGC
AAACAGAACGGCGATGTAAAACCGGCTGTGTTTAGCAGCCAGGAATACCT
CGACATTTACAACAGCAACGATGGATTCAAGTTGAAGGCTGCTGGTCTGA
GCGGAAGCACGCCGAACCTGAGTGCTGGATTAGGAACTCCCTCTGTCAAA
ACCAAGCTGAATCTTAGCAGCAACGTTGGCGAGGGCGAGGCGGAGGGCTC
AGTGAGGGACTACTGCACCAAAGAGGGCGAGCATACGTACCGATGCAAAG
TCTGCTCCCGCGTCTACACGCACATTAGTAACTTCTGCCGTCACTATGTT
ACCTCCCACAAGCGAAATGTGAAAGTGTACCCCTGTCCCTTCTGCTTCAA
AGAGTTTACGCGCAAGGACAATATGACGGCGCACGTGAAAATCATCCACA
AGATCGAAAATCCCTCGACGGCGTTGGCCACAGTCGCGGCAGCGAATCTA
GCAGGCCAGCCACTGGGAGTTTCGGGAGCCTCGACGCCTCCGCCGCCGGA
TCTGAGTGGTCAGAACTCAAATCAGTCGCTGCCAGCCACCAGCAATGCGC
TATCCACCTCCTCCTCGTCGTCGACGTCCTCGTCCAGCGGATCCCTGGGT
CCGTTGACGACCTCCGCACCGCCAGCACCAGCAGCTGCGGCGCAGGCAAG
CTTTCTAGACCAT
BO22972.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:25:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttk-RH | 1932 | CG1856-PH | 1..1929 | 17..1945 | 9645 | 100 | Plus |
| ttk-RD | 1932 | CG1856-PD | 1..1929 | 17..1945 | 9645 | 100 | Plus |
| ttk-RC | 1932 | CG1856-PC | 1..1929 | 17..1945 | 9645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:25:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttk-RH | 4252 | CG1856-RH | 251..2179 | 17..1945 | 9645 | 100 | Plus |
| ttk-RD | 4254 | CG1856-RD | 253..2181 | 17..1945 | 9645 | 100 | Plus |
| ttk-RC | 4497 | CG1856-RC | 496..2424 | 17..1945 | 9645 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:25:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31729631..31730695 | 881..1945 | 5325 | 100 | Plus |
| 3R | 32079331 | 3R | 31727620..31728261 | 159..800 | 3195 | 99.8 | Plus |
| 3R | 32079331 | 3R | 31727291..31727434 | 17..160 | 720 | 100 | Plus |
| 3R | 32079331 | 3R | 31728392..31728479 | 794..881 | 440 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:25:06 has no hits.
BO22972.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-02-18 18:34:02 Download gff for
BO22972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttk-RD | 568..2496 | 17..1947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:58:55 Download gff for
BO22972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttk-RC | 496..2424 | 17..1947 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:28:17 Download gff for
BO22972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ttk-RC | 496..2424 | 17..1947 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:28:17 Download gff for
BO22972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31727291..31727434 | 17..160 | 100 | -> | Plus |
| 3R | 31727622..31728254 | 161..793 | 100 | -> | Plus |
| 3R | 31728392..31728479 | 794..881 | 100 | -> | Plus |
| 3R | 31729632..31730695 | 882..1947 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:58:55 Download gff for
BO22972.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27553013..27553156 | 17..160 | 100 | -> | Plus |
| arm_3R | 27553344..27553976 | 161..793 | 100 | -> | Plus |
| arm_3R | 27554114..27554201 | 794..881 | 100 | -> | Plus |
| arm_3R | 27555354..27556417 | 882..1947 | 99 | | Plus |
BO22972.pep Sequence
Translation from 16 to 1963
> BO22972.pep
MKMASQRFCLRWNNHQSNLLSVFDQLLHAETFTDVTLAVEGQHLKAHKMV
LSACSPYFNTLFVSHPEKHPIVILKDVPYSDMKSLLDFMYRGEVSVDQER
LTAFLRVAESLRIKGLTEVNDDKPSPAAAAAGAGATGSESTATTPQLQRI
QPYLVPQRNRSQAGGLLASAANAGNTPTLPVQPSLLSSALMPKRKRGRPR
KLSGSSNGTGNDYDDFDRENMMNDSSDLGNGKMCNESYSGNDDGSDDNQP
NAGHTDDLNESRDSLPSKRSKNSKDHRVVSHHEDNSTSDGNDSDGEGLDT
SYMEPQLMLDEYDEPVEFKYNPLTDNSSPTQDHTDGSHLNEQARQQAFLI
AAQRKHQVETAAAAAASGIKLNIIGMAAGGAQVKSMVSIPKLTPIGKVNA
ASTPLVSPAGSFSTATVKPRVQKRPKLGKQNGDVKPAVFSSQEYLDIYNS
NDGFKLKAAGLSGSTPNLSAGLGTPSVKTKLNLSSNVGEGEAEGSVRDYC
TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRK
DNMTAHVKIIHKIENPSTALATVAAANLAGQPLGVSGASTPPPPDLSGQN
SNQSLPATSNALSTSSSSSTSSSSGSLGPLTTSAPPAPAAAAQASFLDH
BO22972.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:21:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ttk-PH | 643 | CG1856-PH | 1..643 | 1..643 | 3328 | 100 | Plus |
| ttk-PD | 643 | CG1856-PD | 1..643 | 1..643 | 3328 | 100 | Plus |
| ttk-PC | 643 | CG1856-PC | 1..643 | 1..643 | 3328 | 100 | Plus |
| ttk-PF | 643 | CG1856-PF | 1..643 | 1..643 | 3328 | 100 | Plus |
| ttk-PG | 813 | CG1856-PG | 1..288 | 1..288 | 1498 | 100 | Plus |
