BO22975.complete Sequence
2449 bp assembled on 2010-08-02
GenBank Submission: KX799949
> BO22975.complete
GAAGTTATCAGTCGACATGTCCAAGTTCTTTGTGAATGTTGCCCCCATCA
ACAACAGCAACAGCAGCAGTAGCCACACAACCACCAGCAGCAACACCCAG
CGCCACCAGCAGCACCAACAACACTATGGCGGGAGCGGGACAACCGGCCA
CACGATGGTGGCCCGCAGACTCAACTACGATCTGCACGGCGGCACCACCA
GCATCAACAACAACAACAACATTGTGATCAAGAACGAGTCCGTCGACTTG
GACTACGATCACGTCCTGAGCAGCAGCGACAGCAACAGCAACGGCGGCGT
GGCAGCCCACCTGCGGGATCATGTCTACATCAGTCTGGACAAGGGGCACA
ACACGGGGGCAGTGGCAACAGCAGCGGCGGCGGCAACGGCGGGCCACACG
CAGCAGCAACTGCAGCAGCAGCACCACCACCAAAATCAGCAGCAACGCAA
GGCGACCGGCAAATCCAACGATATCACAAATTATTACAAGGTCAAACGTC
GGCCACACGCCGTCAGCGATGAGATTCACCCGAAGAAGCAGGCCAAGCAG
AGCGCCCACCACCAGACGGTGTATCAGAAGCATACGGCTAGCAGTGCGCC
CCAGCAGCTCCGGCACAGCCACCACCAGCTGCGCCACGACGCGGATGCCG
AACTGGACGAGGATGTGGTGGAGCGGGTGGCCAAGCCGGCATCGCATCAC
CCCTTTTCGCTGTCGACGCCCCAGCAACAGTTGGCTGCGTCGGTGGCCAG
CAGTTCCTCGAGCGGAGATCGCAATCGGGCGGACACCTCGCTGGGAATAC
TGACCAAAAAGTTTGTGGACCTGCTGCAGGAGTCACCGGATGGCGTGGTG
GATCTGAACGAGGCCTCCAATCGATTGCACGTTCAGAAGCGGCGCATCTA
CGACATTACCAATGTCCTCGAAGGCATTAACATCCTGGAGAAGAAGTCGA
AGAACAACATCCAGTGGCGCTGCGGGCAGTCGATGGTCAGCCAGGAGCGT
TCCCGTCACATCGAAGCGGATTCGTTGCGGCTGGAGCAACAGGAGAACGA
GCTGAACAAGGCCATCGATCTGATGCGCGAGAATCTGGCTGAGATCTCCC
AGGAGGTGGAGAACTCCGGCGGCATGGCCTACGTCACGCAGAACGACCTG
CTCAACGTGGATCTCTTCAAAGATCAGATCGTTATCGTGATCAAGGCGCC
GCCAGAGGCTAAGCTTGTGCTGCCCAACACAAAATTGCCGCGCGAGATTT
ACGTGAAGGCGGAGAATAGCGGGGAGATCAACGTCTTCCTCTGCCATGAC
ACCTCACCGGAAAATTCGCCAATCGCGCCGGGCGCCGGCTACGTTGGAGC
ACCCGGTGCAGGATGCGTCCGTACGGCCACCTCCACACGACTGCATCCGT
TGACCAACCAGCGACTGAACGATCCGCTCTTCAACAATATCGATGCCATG
AGCACCAAGGGATTATTTCAAACGCCCTACCGCTCGGCTCGCAACCTCAG
CAAATCGATTGAGGAAGCCGCCAAGCAGTCCCAGCCTGAATATAATAACA
TTTGTGATATTGCGATGGGCCAGCATCATAATCTGAACCAGCAGCAGCAG
CAGCAACAACAACAGTTGCTACAGCAGCCGGAGGAGGACGATGTGGACGT
GGAGCTGAACCAGCTGGTTCCGACACTGACGAATCCTGTGGTCCGGACCC
ATCAGTTCCAGCAGCACCAGCAGCCCTCCATCCAGGAGCTGTTCAGCAGC
TTAACAGAATCCTCGCCTCCAACGCCCACCAAGCGGCGTCGGGAGGCAGC
AGCCGCAGCAATTGCCGCAGGCAGCTCAACAACAGCAACCACTACGCTTA
ATAGTCATAACAACAGAAACCACAGCAATCATAGCAACCACAGCAACCAT
AGCAGCAGCAACAACAGCAAATCCCAACCACCCACAATAGGCTACGGCAG
CAGTCAGCGACGCAGCGATGTGCCCATGTATAATTGTGCAATGGAAGGCG
CAACCACAACATCTGCAACAGCAGATACGACAGCTGCCACATCGCGATCG
GCCGCAGCAAGCTCACTGCAGATGCAATTCGCTGCCGTCGCGGAGAGCAA
CAACGGCAGTAGCAGCGGCGGTGGTGGCGGCGGCGGCGGCTATGGCAGCA
TCGCTGGCGCTGGCGCCAACGCTGATCCCCATCAGCCGTACAGCCATGAC
CGCAACAGCCTGCCGCCCGGCGTGGCTGACTGCGATGCCAACAGCAACAG
CAGCAGTGTCACGCTGCAGGGCCTCGATGCTCTCTTCAACGACATTGGCT
CGGACTACTTCAGCAACGATATCGCCTTTGTGTCCATCAATCCGCCGGAC
GACAATGACTATCCGTATGCGCTGAACGCGAACGAGGGCATCGATCGGCT
GTTTGACTTCGGTTCGGATGCCTATGGACCCGCAAGCTTTCTAGACCAT
BO22975.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E2f1-RF | 2418 | CG6376-PF | 1..2415 | 17..2431 | 12075 | 100 | Plus |
| E2f1-RA | 2418 | CG6376-PA | 1..2415 | 17..2431 | 12075 | 100 | Plus |
| E2f1-RC | 2418 | CG6376-PC | 1..2415 | 17..2431 | 12075 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:40:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E2f1-RF | 4653 | CG6376-RF | 967..3385 | 13..2431 | 12080 | 100 | Plus |
| E2f1-RA | 3913 | CG6376-RA | 1291..3709 | 13..2431 | 12080 | 100 | Plus |
| E2f1-RC | 4778 | CG6376-RC | 1092..3510 | 13..2431 | 12080 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:40:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21622812..21623651 | 2306..1467 | 4200 | 100 | Minus |
| 3R | 32079331 | 3R | 21625165..21625895 | 1219..489 | 3655 | 100 | Minus |
| 3R | 32079331 | 3R | 21626020..21626501 | 494..13 | 2395 | 99.8 | Minus |
| 3R | 32079331 | 3R | 21623839..21624086 | 1466..1219 | 1240 | 100 | Minus |
| 3R | 32079331 | 3R | 21621572..21621696 | 2431..2307 | 625 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6778..7028 | 1796..2043 | 283 | 61.3 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2373..2619 | 46..298 | 278 | 60.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6731..6895 | 1797..1968 | 265 | 67.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2385..2938 | 1571..2150 | 236 | 54.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6968 | 187..434 | 219 | 57 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2773..2925 | 1782..1931 | 199 | 63.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6899 | 105..298 | 154 | 57.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2643..3031 | 46..417 | 154 | 54.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1500..1587 | 209..295 | 122 | 61.4 | Plus |
BO22975.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 10:19:22 Download gff for
BO22975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f-RA | 1244..3658 | 17..2433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:34 Download gff for
BO22975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f-RB | 539..2953 | 17..2433 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:41 Download gff for
BO22975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| E2f1-RC | 1096..3510 | 17..2433 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:41 Download gff for
BO22975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21621570..21621696 | 2307..2433 | 98 | <- | Minus |
| 3R | 21622812..21623651 | 1467..2306 | 100 | <- | Minus |
| 3R | 21623839..21624085 | 1220..1466 | 100 | <- | Minus |
| 3R | 21625165..21625893 | 491..1219 | 100 | <- | Minus |
| 3R | 21626024..21626497 | 17..490 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:34 Download gff for
BO22975.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17447292..17447418 | 2307..2433 | 98 | <- | Minus |
| arm_3R | 17448534..17449373 | 1467..2306 | 100 | <- | Minus |
| arm_3R | 17449561..17449807 | 1220..1466 | 100 | <- | Minus |
| arm_3R | 17450887..17451615 | 491..1219 | 100 | <- | Minus |
| arm_3R | 17451746..17452219 | 17..490 | 100 | | Minus |
BO22975.pep Sequence
Translation from 16 to 2449
> BO22975.pep
MSKFFVNVAPINNSNSSSSHTTTSSNTQRHQQHQQHYGGSGTTGHTMVAR
RLNYDLHGGTTSINNNNNIVIKNESVDLDYDHVLSSSDSNSNGGVAAHLR
DHVYISLDKGHNTGAVATAAAAATAGHTQQQLQQQHHHQNQQQRKATGKS
NDITNYYKVKRRPHAVSDEIHPKKQAKQSAHHQTVYQKHTASSAPQQLRH
SHHQLRHDADAELDEDVVERVAKPASHHPFSLSTPQQQLAASVASSSSSG
DRNRADTSLGILTKKFVDLLQESPDGVVDLNEASNRLHVQKRRIYDITNV
LEGINILEKKSKNNIQWRCGQSMVSQERSRHIEADSLRLEQQENELNKAI
DLMRENLAEISQEVENSGGMAYVTQNDLLNVDLFKDQIVIVIKAPPEAKL
VLPNTKLPREIYVKAENSGEINVFLCHDTSPENSPIAPGAGYVGAPGAGC
VRTATSTRLHPLTNQRLNDPLFNNIDAMSTKGLFQTPYRSARNLSKSIEE
AAKQSQPEYNNICDIAMGQHHNLNQQQQQQQQQLLQQPEEDDVDVELNQL
VPTLTNPVVRTHQFQQHQQPSIQELFSSLTESSPPTPTKRRREAAAAAIA
AGSSTTATTTLNSHNNRNHSNHSNHSNHSSSNNSKSQPPTIGYGSSQRRS
DVPMYNCAMEGATTTSATADTTAATSRSAAASSLQMQFAAVAESNNGSSS
GGGGGGGGYGSIAGAGANADPHQPYSHDRNSLPPGVADCDANSNSSSVTL
QGLDALFNDIGSDYFSNDIAFVSINPPDDNDYPYALNANEGIDRLFDFGS
DAYGPASFLDH
BO22975.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| E2f1-PF | 805 | CG6376-PF | 1..805 | 1..805 | 4178 | 100 | Plus |
| E2f1-PA | 805 | CG6376-PA | 1..805 | 1..805 | 4178 | 100 | Plus |
| E2f1-PC | 805 | CG6376-PC | 1..805 | 1..805 | 4178 | 100 | Plus |
| E2f1-PB | 805 | CG6376-PB | 1..805 | 1..805 | 4178 | 100 | Plus |
| E2f1-PE | 821 | CG6376-PE | 1..821 | 1..805 | 4151 | 98.1 | Plus |
