Clone BO22976 Report

Search the DGRC for BO22976

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:229
Well:76
Vector:pDNR-Dual
Associated Gene/Transcriptolf413-RB
Protein status:BO22976.pep: Imported from assembly
Sequenced Size:2314

Clone Sequence Records

BO22976.complete Sequence

2314 bp assembled on 2012-04-24

GenBank Submission: KX797579

> BO22976.complete
GAAGTTATCAGTCGACATGGCTCACCCACGGAAGGCAGTTGCGACACCAG
CAACACTTCAACTTGGCCCACCAGCACAAACAGCACAAAGCCCGGCAGCA
ACATTGCGGCACAGCAGAACAGCCTCAAGTTCAAGGCGGCTATCGTTAAT
CAGATGTTTTATATCCTGCCACACGTTCAACTTGTTCCTGCTGCTTCTCC
TGTTGGCCAGCGGAGTCCGTGCTGCCAGCAAGCTGGCCACTCGGAGCAAC
AAAACATCGGGCTCATCGACAGCATCGGGAGTCGGAGCCGGAACAGCGGC
AACTTCGGCAGCGGCGGCGGCAGCGTCAGGAACACCCATTTGGGATCATG
CCATCGATTTGAATGACGATTTTCGCATACTATGGCAAATCATTAATCAG
GATATAACATTTGAAATACAGGCACGTACCCTGGGCTACGTCGGGTTCGG
ATTCTCGCCCGATGGCAATCTGGCTGGTGCCGATATGGCCATCGGCTGGG
TGGACAAGGGTCAAACCTATTTTCAGGATCGACACGTCACACGGAATGGA
GACCCCGAACCGGTGGTGGATCCCTCGCAGGATTATATGCTGATGCTGGG
CTACGAGAACGCGACCCACACGGTCCTCCGCTTCCGACGCAAACTGGACA
CATGCGACCCCAGCCACGACATCGCCATCACGAACGACACGATGCGCCTG
CTGTACATGTATCACGCCCAGGATCCGCCGCACGGCTCGGTGCGTCCTGG
CACCCTTCCGGATCCGGCCCGCGCCTTCCGCCCCTACCGCCCCATGGTCC
TCATGCAGCGCGCCCAGCTGCCGATGCCCTCACCCACGCACGACGAGCGC
GTGCGAGTCCTCGAGCTGCGCAACGAGGATGTGGAGCTGCCCGCCGGCGA
CCTACCGCTCTTCTGGTGCAAGATGTTCAAGCTGGAGGACATCAATCGCA
AGCACCACCTGATCCGGTACGAGCCGATTTATGATTCATCGTCCAGCGTG
CACTACTTGCAGCACATAACGCTGCACGAGTGCCAGGGTGCCCACGCGGA
GCTGGAGGAGATGGCACGCGAGCAGGGCCGCCCGTGCCTCGGAGCCCGAT
CCATTCCGCTGGCGTGCAACGCCATCGTGGCCTCCTGGTCGCGCGGCAGC
GAGGGCTTTACTTATCCACATGAGGCCGGCTACCCGATCGAGTCGCGGCA
GGCGAAATATTATTTAATGGAGACCCATTACAACAATTTGAAGCCCGACT
TTGCCCAATTGCACGCCAGACAAATGGCGGATAATTCGGGTTTGAAAATC
TACTTTACGCACGTCCTGCGACCTAACGATGCTGGCACACTGTCAATCGG
AATGGACCCCAATTGGCGACACATTATCCCGCCGGGCCAGAAGCGGGTCG
TTTCCGAGGGTCAGTGTATCGAGGACTGCACCGGCTACGCCTTCCCCCAG
CAGGGCATCAACATATTCGCGGTGATGATGCGCACCCACCAGATCGGCAA
GGAGGTCAAATTACGCCAGATACGACAAACCGAGGAGCTGCCGCCAATTG
CACACGACAGCAATATAGATGTTGCCTATCAGGACTTTCGACGTTTGCCA
CAATCGGTGCATTCCATGCCCGGGGATAGACTCATCGCCGAATGCATTTA
TGACAGTTCGTCACGAAAGGCAATTACCCTGGGTGGACTTACCATGAAGG
AAGAAAGCTGCACGGTGCTGACACTCTACTATCCACGCCAGAAGAAACTG
ACAACGTGTCACTCACTGCCGAGTCTGCCCACAGTGTTGCACTCGCTTGG
TATCGAGCAACTGGCAACCGACTCGAACCCCGTGCTTATATCATCGCCGC
CCGAATTGGCCGGAATGACACTGGAGGCACGTCTGATATCCTACGACTGG
GAGAATCAATTTGGCGAATTCCAGGAGGCCACACGCAAGGGCAGCTTCAA
GCCCATTTGCTGGGGGGCCAAGAATCATGTGGTGCCGGGCTCCGAGTTTC
TCGAGGGCTACAGCATAAATGTGACCAAAACGTACAAGAAGCACCGTCGG
TGCAAACCCAAGCGGCCCCTGGCCCCGCCCACCGAGCGCACCGCCCCGCC
ACCCGCGTCCGACCTCAGCGAGCTCCCGGTGCTGCACGAGTTGGACAACA
ACAACATCATCGAGGGAGCGGCGCGGAGCAGTCGCAGCTCGGCGACCGAC
GTCCACAGCCTGAGCCGCGGGAGCGGTCGCCACTTCATCAGCTGCCTGCT
CTGGCTGGGCGCCTCGTCCTGGTGGCTCCTGCTAATGCTAAGGACGGCAA
GCTTTCTAGACCAT

BO22976.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 07:52:02
Subject Length Description Subject Range Query Range Score Percent Strand
olf413-RC 2283 CG12673-PC 1..2280 17..2296 11385 100 Plus
olf413-RB 2283 CG12673-PB 1..2280 17..2296 11385 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 07:52:03
Subject Length Description Subject Range Query Range Score Percent Strand
olf413-RC 8353 CG12673-RC 1028..3307 17..2296 11385 100 Plus
olf413-RB 3443 CG12673-RB 1028..3307 17..2296 11385 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 07:52:00
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 22184093..22184603 17..527 2555 100 Plus
3L 28110227 3L 22242347..22242656 1987..2296 1550 100 Plus
3L 28110227 3L 22221699..22221984 682..967 1415 99.7 Plus
3L 28110227 3L 22223650..22223848 1152..1350 995 100 Plus
3L 28110227 3L 22222487..22222674 967..1154 940 100 Plus
3L 28110227 3L 22228996..22229166 1349..1519 855 100 Plus
3L 28110227 3L 22239167..22239336 1819..1988 850 100 Plus
3L 28110227 3L 22229257..22229424 1517..1684 840 100 Plus
3L 28110227 3L 22206827..22206985 524..682 795 100 Plus
3L 28110227 3L 22231223..22231359 1682..1818 685 100 Plus
Blast to na_te.dros performed on 2014-11-28 07:52:01 has no hits.

BO22976.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-06 12:07:41 Download gff for BO22976.complete
Subject Subject Range Query Range Percent Splice Strand
olf413-RA 999..3269 17..2298 99   Plus
Sim4 to dmel-all-transcript-r5.32.fasta performed 2012-04-24 17:01:48 Download gff for BO22976.complete
Subject Subject Range Query Range Percent Splice Strand
olf413-RB 1002..3281 17..2298 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:33:44 Download gff for BO22976.complete
Subject Subject Range Query Range Percent Splice Strand
olf413-RB 1028..3307 17..2298 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:05:31 Download gff for BO22976.complete
Subject Subject Range Query Range Percent Splice Strand
olf413-RB 1028..3307 17..2298 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:05:31 Download gff for BO22976.complete
Subject Subject Range Query Range Percent Splice Strand
3L 22242348..22242656 1988..2298 99   Plus
3L 22223652..22223847 1154..1349 100 -> Plus
3L 22228997..22229166 1350..1519 100 -> Plus
3L 22229260..22229422 1520..1682 100 -> Plus
3L 22231224..22231359 1683..1818 100 -> Plus
3L 22239167..22239335 1819..1987 100 -> Plus
3L 22222488..22222673 968..1153 100 -> Plus
3L 22184093..22184602 17..526 100 -> Plus
3L 22206830..22206985 527..682 100 -> Plus
3L 22221700..22221984 683..967 99 -> Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:33:44 Download gff for BO22976.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 22232267..22232435 1819..1987 100 -> Plus
arm_3L 22215588..22215773 968..1153 100 -> Plus
arm_3L 22199930..22200085 527..682 100 -> Plus
arm_3L 22216752..22216947 1154..1349 100 -> Plus
arm_3L 22222097..22222266 1350..1519 100 -> Plus
arm_3L 22222360..22222522 1520..1682 100 -> Plus
arm_3L 22177193..22177702 17..526 100 -> Plus
arm_3L 22214800..22215084 683..967 99 -> Plus
arm_3L 22224324..22224459 1683..1818 100 -> Plus
arm_3L 22235448..22235756 1988..2298 99   Plus

BO22976.pep Sequence

Translation from 16 to 2314

> BO22976.pep
MAHPRKAVATPATLQLGPPAQTAQSPAATLRHSRTASSSRRLSLIRCFIS
CHTFNLFLLLLLLASGVRAASKLATRSNKTSGSSTASGVGAGTAATSAAA
AAASGTPIWDHAIDLNDDFRILWQIINQDITFEIQARTLGYVGFGFSPDG
NLAGADMAIGWVDKGQTYFQDRHVTRNGDPEPVVDPSQDYMLMLGYENAT
HTVLRFRRKLDTCDPSHDIAITNDTMRLLYMYHAQDPPHGSVRPGTLPDP
ARAFRPYRPMVLMQRAQLPMPSPTHDERVRVLELRNEDVELPAGDLPLFW
CKMFKLEDINRKHHLIRYEPIYDSSSSVHYLQHITLHECQGAHAELEEMA
REQGRPCLGARSIPLACNAIVASWSRGSEGFTYPHEAGYPIESRQAKYYL
METHYNNLKPDFAQLHARQMADNSGLKIYFTHVLRPNDAGTLSIGMDPNW
RHIIPPGQKRVVSEGQCIEDCTGYAFPQQGINIFAVMMRTHQIGKEVKLR
QIRQTEELPPIAHDSNIDVAYQDFRRLPQSVHSMPGDRLIAECIYDSSSR
KAITLGGLTMKEESCTVLTLYYPRQKKLTTCHSLPSLPTVLHSLGIEQLA
TDSNPVLISSPPELAGMTLEARLISYDWENQFGEFQEATRKGSFKPICWG
AKNHVVPGSEFLEGYSINVTKTYKKHRRCKPKRPLAPPTERTAPPPASDL
SELPVLHELDNNNIIEGAARSSRSSATDVHSLSRGSGRHFISCLLWLGAS
SWWLLLMLRTASFLDH

BO22976.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 08:07:29
Subject Length Description Subject Range Query Range Score Percent Strand
olf413-PC 760 CG12673-PC 1..760 1..760 4032 100 Plus
olf413-PB 760 CG12673-PB 1..760 1..760 4032 100 Plus
CG5235-PB 698 CG5235-PB 61..519 123..584 674 33.2 Plus
CG5235-PA 698 CG5235-PA 61..519 123..584 674 33.2 Plus
Tbh-PC 670 CG1543-PC 81..561 93..590 453 27.8 Plus