BO22983.complete Sequence
1657 bp assembled on 2010-07-19
GenBank Submission: KX800114
> BO22983.complete
GAAGTTATCAGTCGACATGAATCACCTATCGCCGCCGCCATCGCCGCACT
CCCAGCAGCCGAGTCCCGCGGGATTGGGCTGCCATGGAGCAGCTCTGGAC
AAGCAGTGGATGCAGCGGGCATCCGCCTTCAACACTGTGATAGCCTCCGC
CGCAGCACAGAAACTCAATGGTCGAGATCTGCCCTTTTTGTACAACCCGC
TGCTCTACTCGAGTGCCCTACTGTGGCCCCAATTTTTGTTGTCCTCGGCC
ACGGCTCTGGGTACACCACTGACCCCCATGACCCCCAAATCGCCCGCCTC
TGTGGTTTTGGGTCAGCGGGATCGTGACTTTGCCTTGACGCCCGAAAAGG
AGCATGAACTCCAAATGAACAATAACAATGAGAACAGCAAGCAGGACTAT
CAGGAGCAGGATGAGGATATGCCACTAAATCTAAGCACCAAGGAGCGCAT
CACATCGGATGATTCCAACCGAGATCAGTATCACAGCAGCAGCAACAACA
GCAGCAGGAGCAGTTCCAGCAGTGAAGTGGAGCAACTGCATCCGATGACC
TCGCTGAACGTTACCCCGCCTCCCCTGAGCGCTGTGAATCTAAAGAGTTC
GAGTACACCACAGCAACAGCGCCAGAGATCGCAGGGTAACATCATCTGGT
CACCGGCCTCGATGTGCGAGAGATCGGCGAGAAGGGAGCAGTACGGCCTG
AAGATGGAGGAGCAGGGCGATGAGGAGGAGCACCAGGTGGATCCTATTGT
GCGAAAGTTCAAGTATGAGCGCAGAACTGCATCCATATCCTCGCTGCAAT
CGCCGATCTCCTCGCTGTCCGCTCCCGCCTCGAATGCCGTCCAGGATCTG
GAGTTCGAGGTGGCCCAACAGCAGTTGTATGCCCATCGCAGCGCATTCAT
GGCCGGATTGACGGGCAACAATCTGGAGCTGCTCACCCAGCACTTGAAGC
TGAAGAGCGAGCAGCCGCAGCAGCAGCAGCAACAGCATCGCATCAAGGAC
GAGCAGCAGCAGGATAACCGCTCGGCAGCGGCACTCATGAATTTGGTGGC
AGCCGCCGAATTCGGCTACATGCGTAATCAACACCAACAGCCGCAGCAGC
AGCAGCAACAACAGTTGCATCACCAGCAGCAGCCGCAGCAACATCAGCAT
CAGCAGCAACATCCTGACTCGACGGCCACAGATGTTGCGCGTCGTTCGTC
CTCCTCGTCATCTTACCAAGGAGAAAACGAAGAGAAGCGCAGCGGCAGGA
ATTTCCAGTGCAAACAGTGTGGCAAGAGCTTCAAGCGTTCGTCCACCCTG
TCCACACATCTGCTCATCCACAGCGATACACGGCCATATCCCTGCCAATA
TTGTGGCAAGCGGTTCCACCAAAAGTCGGACATGAAAAAGCACACGTACA
TACATACCGGCGAGAAGCCACACAAGTGCACCGTGTGCCTGAAGGCCTTC
AGCCAGAGCTCCAACCTGATCACGCATATGAGGAAGCACACGGGGTATAA
ACCCTTCGGTTGCCACCTTTGCGATCAGTCCTTCCAGCGCAAGGTGGATC
TGCGACGTCATCGAGAGAGCCGCCATGAGGAGGCTCCGCCAGTGGAGGAC
CTGAAGCCCCTGAAGATGGAGGTGAGCAGCAGCAGCTGCGCAAGCTTTCT
AGACCAT
BO22983.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:45:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sens-RA | 1626 | CG32120-PA | 1..1623 | 17..1639 | 8115 | 100 | Plus |
| sens-2-RB | 2241 | CG31632-PB | 1690..1991 | 1253..1554 | 685 | 81.8 | Plus |
| sens-2-RA | 2241 | CG31632-PA | 1690..1991 | 1253..1554 | 685 | 81.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:45:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sens-RA | 2451 | CG32120-RA | 219..1841 | 17..1639 | 8115 | 100 | Plus |
| sens-2-RB | 3744 | CG31632-RB | 2356..2657 | 1253..1554 | 685 | 81.8 | Plus |
| sens-2-RA | 3361 | CG31632-RA | 1973..2274 | 1253..1554 | 685 | 81.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:45:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13399385..13400468 | 1258..175 | 5420 | 100 | Minus |
| 3L | 28110227 | 3L | 13396838..13397068 | 1639..1409 | 1155 | 100 | Minus |
| 3L | 28110227 | 3L | 13400748..13400907 | 176..17 | 800 | 100 | Minus |
| 3L | 28110227 | 3L | 13397303..13397456 | 1410..1257 | 770 | 100 | Minus |
| 2L | 23513712 | 2L | 6833031..6833179 | 1253..1401 | 400 | 84.6 | Plus |
| 2L | 23513712 | 2L | 6837763..6837908 | 1409..1554 | 295 | 80.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 04:45:49 has no hits.
BO22983.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-19 10:31:04 Download gff for
BO22983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sens-RA | 219..1841 | 17..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:45 Download gff for
BO22983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sens-RA | 219..1841 | 17..1641 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:56:41 Download gff for
BO22983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sens-RA | 219..1841 | 17..1641 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:56:41 Download gff for
BO22983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13396834..13397067 | 1410..1641 | 99 | <- | Minus |
| 3L | 13397304..13397454 | 1259..1409 | 100 | <- | Minus |
| 3L | 13399385..13400466 | 177..1258 | 100 | <- | Minus |
| 3L | 13400748..13400907 | 17..176 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:45 Download gff for
BO22983.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13389934..13390167 | 1410..1641 | 99 | <- | Minus |
| arm_3L | 13390404..13390554 | 1259..1409 | 100 | <- | Minus |
| arm_3L | 13392485..13393566 | 177..1258 | 100 | <- | Minus |
| arm_3L | 13393848..13394007 | 17..176 | 100 | | Minus |
BO22983.pep Sequence
Translation from 16 to 1657
> BO22983.pep
MNHLSPPPSPHSQQPSPAGLGCHGAALDKQWMQRASAFNTVIASAAAQKL
NGRDLPFLYNPLLYSSALLWPQFLLSSATALGTPLTPMTPKSPASVVLGQ
RDRDFALTPEKEHELQMNNNNENSKQDYQEQDEDMPLNLSTKERITSDDS
NRDQYHSSSNNSSRSSSSSEVEQLHPMTSLNVTPPPLSAVNLKSSSTPQQ
QRQRSQGNIIWSPASMCERSARREQYGLKMEEQGDEEEHQVDPIVRKFKY
ERRTASISSLQSPISSLSAPASNAVQDLEFEVAQQQLYAHRSAFMAGLTG
NNLELLTQHLKLKSEQPQQQQQQHRIKDEQQQDNRSAAALMNLVAAAEFG
YMRNQHQQPQQQQQQQLHHQQQPQQHQHQQQHPDSTATDVARRSSSSSSY
QGENEEKRSGRNFQCKQCGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRF
HQKSDMKKHTYIHTGEKPHKCTVCLKAFSQSSNLITHMRKHTGYKPFGCH
LCDQSFQRKVDLRRHRESRHEEAPPVEDLKPLKMEVSSSSCASFLDH
BO22983.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sens-PA | 541 | CG32120-PA | 1..541 | 1..541 | 2847 | 100 | Plus |
| sens-2-PB | 746 | CG31632-PB | 114..673 | 5..522 | 559 | 32.2 | Plus |
| sens-2-PA | 746 | CG31632-PA | 114..673 | 5..522 | 559 | 32.2 | Plus |
| erm-PB | 603 | CG31670-PB | 254..413 | 364..516 | 333 | 40.6 | Plus |
| erm-PA | 611 | CG31670-PA | 262..421 | 364..516 | 333 | 40.6 | Plus |
| erm-PB | 603 | CG31670-PB | 362..482 | 409..529 | 325 | 46.3 | Plus |
