BO23037.complete Sequence
1939 bp assembled on 2010-07-16
GenBank Submission: KX799566
> BO23037.complete
GAAGTTATCAGTCGACATGGCGACAGCTGAAATCGACGATTTGATTGAAA
AGCTGAAGACGACCAGTGTCAGTCCGGCGAACACGACCAACTTGCTCTGC
GAGATCTCGGCGACGAAGGACCCCAAACTTTTCGATAAGCACGAGCTGGC
AGAGTGCTTTCTGGGCCTCACCAAGTGCGACGACACAAACGTGCGCAAGG
AGGCGGCCAAGTGCATTGCGGAGATCACCAAGTCCGAGGTGCAGCGCAAG
AAGTTCACCAAGAGGAATATAATAGCCGCATTTCTGGAGTGCTTGCGACA
AGTGCCCACGTCCGACGGCAGTATGGAGCTGCCCATACAGATTTGTCGGG
CACTGGGCAATATCTGCTACCTAAACGACGAAGCCAGGGACTTAATACTC
GAGCTGGAGGGCGATGCTGTTCTACTGCGACTGCTGGACATCACAACCAT
CGAGGACGTGGCCAATGCGGCGCAATTCATCAAAGTGCGCGGCGGCTTGC
TGTCCAACTATTTGCTCGGAGGCGAGGGCTTGGCCAAGCGGGCCATGGAG
TTGGGCGTGATGAAGAAGCTGCAAGGCATCATCGACATTGGCGCCTCCAA
TGTGGAACAGCATGAGGATCTGCTGCTGAACACGCTTCCACTGCTCAGTA
TACTCACCGAGAACGTGTCGGATCTGAACTTCGACTCTTCCCTGAATATC
CAGCTGTCTCGCATTCTGGCCGCTTCCACGAATCCCGATCTTGCCGAGAT
GTGCCTGGAGCTGCTCCATTACCAGGCGGAGAGCGACGAAGTCAAGCTTA
TTTTGGCCAAGGACGGTCTGTGCGAAACCATCTACAACCTGCTGGAAAAG
TACAAGACTCTGGCCAGCACAAGTGAGGCCAGGGCGTTGATGAAACTCGC
CTGCGAACTCATCGTATTAATCCTTACTGGTGATGACTCAATGCACTATT
TGTACACCACGCCGCTGCTGAAGAACATGGTCGATTGGCTGGACTCGACG
GACATCGATCTGCTAACCACCGGCGTGCTGGCCCTGGGCAACTTTGCGCG
CACCGATAGCCACTGCATCTACTTTGTGGAGCAGCAGACCATGAACAAGC
TGCTCGAGGTGCTGGCCAAGAACAACGGCGTCAAGGACGATGTGCGCCTG
CAGCACGCTCTTCTCTCCGCGCTGCGCAACCTGGTCATCCCGAAGCCAAA
CAAGAACGCGGTAATCCAGGCGGGCCTGGTGCAGACCATTCTTCCCATGC
TCGAAATACACCAGCCACCAGTCGTCTTCAAGCTGCTGGGCACACTTCGC
ATGACCGTCGACGGACAGGAGAAACTCGCACTGGAGTTGCTGAAGAACAA
GACTCTGATCGAGCAGCTGGTGCACTGGAGCAAATCGTCGGACTATGCGG
GCGTCACCGGCGAGTCTCTGCGCCTCATGGCCTGGCTGATCAAGCACGCC
TACCTCAGCAAAATCGCATACGCACTGCCGCGCAAGGGCGATGCACCCGC
CGAACAGATTGCCGACAAGATTCCGCTAACGCAAGACTACGATCGCAGTA
GCTTGAGCGAGTTCCTTGCCAACGAGGGCACCGTGGAGGCCATGGTCAGC
ATGCTCACAGCTCAGCACCTGGTCATGCAGAACGAGGCGCTGATTGCCCT
GTGCATCCTGTCCGTGGTGTACCTGTCGCAGCCCAGCGAGGCGGCGCAGG
CCCAGCTGCTGCAGGACGAGCTGGTCAAGTGCGAGGTCGGCAAGAAGTTG
GCCGAGCTCATCAGCAAGTCGTCGGACACGATGACCAAGGAGATTGTCGA
GAACCTGCAGAACTGCGTGAACTTGCTCAAATCTTCCGAGCAGCTGGTGG
CGCATCTGGAACAGCATAACATCAACGAGCTGCTGAAGTCTATACCCATT
CTCACCGAATACTGCACCTTGGCAAGCTTTCTAGACCAT
BO23037.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:42:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vimar-RC | 1908 | CG3572-PC | 1..1905 | 17..1921 | 9525 | 100 | Plus |
| vimar-RB | 1905 | CG3572-PB | 8..1902 | 27..1921 | 9475 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:42:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vimar-RC | 3470 | CG3572-RC | 293..2199 | 15..1921 | 9535 | 100 | Plus |
| vimar-RB | 3467 | CG3572-RB | 302..2196 | 27..1921 | 9475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:42:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 6977692..6978600 | 932..24 | 4545 | 100 | Minus |
| 2R | 25286936 | 2R | 6976556..6977158 | 1921..1319 | 3015 | 100 | Minus |
| 2R | 25286936 | 2R | 6977216..6977603 | 1319..932 | 1940 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:42:13 has no hits.
BO23037.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-16 17:08:32 Download gff for
BO23037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RC | 292..2196 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:32 Download gff for
BO23037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RC | 295..2199 | 17..1923 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:55:26 Download gff for
BO23037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| vimar-RC | 295..2199 | 17..1923 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:55:26 Download gff for
BO23037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 6976554..6977157 | 1320..1923 | 99 | <- | Minus |
| 2R | 6977216..6977602 | 933..1319 | 100 | <- | Minus |
| 2R | 6977692..6978600 | 24..932 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:32 Download gff for
BO23037.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 2864059..2864662 | 1320..1923 | 99 | <- | Minus |
| arm_2R | 2864721..2865107 | 933..1319 | 100 | <- | Minus |
| arm_2R | 2865197..2866105 | 24..932 | 100 | | Minus |
BO23037.pep Sequence
Translation from 16 to 1939
> BO23037.pep
MATAEIDDLIEKLKTTSVSPANTTNLLCEISATKDPKLFDKHELAECFLG
LTKCDDTNVRKEAAKCIAEITKSEVQRKKFTKRNIIAAFLECLRQVPTSD
GSMELPIQICRALGNICYLNDEARDLILELEGDAVLLRLLDITTIEDVAN
AAQFIKVRGGLLSNYLLGGEGLAKRAMELGVMKKLQGIIDIGASNVEQHE
DLLLNTLPLLSILTENVSDLNFDSSLNIQLSRILAASTNPDLAEMCLELL
HYQAESDEVKLILAKDGLCETIYNLLEKYKTLASTSEARALMKLACELIV
LILTGDDSMHYLYTTPLLKNMVDWLDSTDIDLLTTGVLALGNFARTDSHC
IYFVEQQTMNKLLEVLAKNNGVKDDVRLQHALLSALRNLVIPKPNKNAVI
QAGLVQTILPMLEIHQPPVVFKLLGTLRMTVDGQEKLALELLKNKTLIEQ
LVHWSKSSDYAGVTGESLRLMAWLIKHAYLSKIAYALPRKGDAPAEQIAD
KIPLTQDYDRSSLSEFLANEGTVEAMVSMLTAQHLVMQNEALIALCILSV
VYLSQPSEAAQAQLLQDELVKCEVGKKLAELISKSSDTMTKEIVENLQNC
VNLLKSSEQLVAHLEQHNINELLKSIPILTEYCTLASFLDH
BO23037.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| vimar-PC | 635 | CG3572-PC | 1..635 | 1..635 | 3173 | 100 | Plus |
| vimar-PB | 634 | CG3572-PB | 1..634 | 1..635 | 3157 | 99.8 | Plus |
