BO23040.complete Sequence
3667 bp assembled on 2010-08-03
GenBank Submission: KX798706
> BO23040.complete
GAAGTTATCAGTCGACATGTCTGTGGACAACCCGTATTACTTTTGCAATG
AAACCAAGTCGCCGCGCACCCCGGACTCGCAGTCCTCCAGCCGGGGATTC
TCGATCTTCAAGCGGCGCAACTCGAAGGGCAGCAGCCCCCGGCCGCTGGT
GATGACCAATCCGGAACAGATGCGACTGATCACATCCGCCAATCTGGATA
CCACGGCTACCATGGCATTAGGAAGTCCGCGGGGCAGCTTCAATTCCCTC
GCCGGCTATCCGCAACACGCGATTGAACTGCAGACGATGAACATGTACCG
CCAGCGATCTGCAAATTCGCACTCAGAGTTCCGGGAACGCCTGAATTCTT
GCAACGAGACCCACAGCTCCCAGTGTCCCGGAGGAGGAGGTGCATCCGTA
GCTGGGGATCACGACGAGGTCTTCAATCCGCTGACATCGCCAACAAGTAG
CAAATCGCATCGACATCACACCCTGCCAAGTGGCGGAACTCGTCGCCATT
CCCTGGGAAACTGGGCCCAACATCAGCATCAACAGCAACATCAACAGAAC
TCTGGAGCAATGGGACTGGGATCTCCGGATGAGGTGCCCAGCATGATGGC
GCCTCGACCGCCGCTCCTCTCGCCAAACAAATTCCGCGGCAGTTCCCATC
GACGAAGAGACAACTGCGGCAACGTGAACAACACGAGTGGATCGAGTGCA
TCCGGATTCCTGGGCTCTCCCGGCTACAACATGGACGACATCCTGATCAT
CACCGCCAAGCACAGCGAGCGCGCCTATTTGAGGGCCACTTTCCTGAAGA
ACCACTTCGACAAGATCACCAAACAGCGCGGACGGAAACCATTCAATTTT
CTGCACATCAAAATTGACGATGGTCCCTTCAGCGAGGAGATTGCCCACAA
GTATCAGAACACAGCTTTGCAGATTGTGATCCTCTGTCCCGCACTTTTGG
CCCTTCCTCACAGCTTTCTGATGACCCAGCTATCGGCCATTATTCGCGTG
GAAAAGGTACTGGCCATTTTGTTGGATGTCAGCGAGGAGAAGGTGAAGGA
GATGCACAAGTCGGCACTGCCCAGTTACTACAAGTGGCGTCGTTGTGTGG
TGCGCGACAATGACCAGGTGCAGATCAGCAATATCCTGGGCATTGCCACC
GATATCCTGGGACGCGCGTTGTGCCAGCGACCACCGTGCCAGGATAGCTC
TGGCGGAGGAGGTGGTGGTCTCTCGCGCAGCTTCTCTAGCTGCACCGAGG
GATTCACCGTGCTGCCCAAGAAGGTCAAGCTGGGCCAAAACAAGGTGGTT
GCTCTGCTGGCAGAACCGCTGGAGAAGAACGACACCCTGAAGCTGCAGGT
GGAGAAGTCCGGTGAGCTAATCGAGCTGCGCAACTTCAAGTGCCGCAATC
CCTACACCCTGCAGTTCAATATCCCAGAGGCCTGCATGGAGATCTCCACC
ATGATCGAGATTCGCATCGAGAAGAACAACAAGAGTCTGGGTGCCAGGCC
CATCAAGTGCGAGAGTCGTCTGCGGGAACTGGAGCAGCTGCTGCGTATTG
AGGACTCGCCAATTGAGTTCATGTGCCATGCCCTGGGAATTGGACCCGTG
GAGCGGGATGCCCTCGATCAGCACTTGCTGCAGTGCTTCCAACGCAACAT
GCCACCCAACTTCCACCTGCTGAGTGGTCCCAGCGAGCGTCAGCCACACT
TCTTCACCCGTCTGGAATCCAGTCCAGAGGAGTACCCCACATTGCTGCAC
TTCGCCGCCAGATGGGGCCTGAATCGCCTGTGCATCCAGCTGATGGAGTG
CCCAGGTGGCGACACCGCATGCGGAGTAAGAAACTGCGCCGGACGCACTC
CGGCCGAGTTGGCCGAACAGGAGGGGCATCACAAGTTGGCCCAGAACATC
GTCAGTTTCGCAGAGTTTCACGAACTGACCACCATGTACCACTACTTCAA
GGGAGTGACTCCGCCAGGCGAGAGCTGTCCCAAGCCCAGTGCCAATGTGG
TGATTGAAGCACATCCCGTTAAGGCCGGAAAGACCAACAAGCCACCGAAG
GAACTGCCCACGGCGGAGTATATGGAGATGTCCAGTGGATCGGAGCGGGA
GAACACACCTGAAGTGAGGACCAAGACGGAAACCCTTGCTATCTCGAATC
TCAACTACATAAGTGTGGAAACCGAGGACGAAAACCTGCAGGCTTCCGTG
GCCGAAAAGAAGGTGGAATCTGAAAAGAAACTGCCCGAGGCTGGCAATCA
ACCTGGCCCGGAAAAGACCACCAACGAATTGAGGATCAACGAGCCACCCT
ACTATCAGTCCAAAGAGCAGAACCAGCAGCCAAAGGAACTCAAGAACCAG
AGCAAATCCCTGGACGAAGTGGATGCGGCGCCACTCTATCAGACCGACAA
ATTCAGCCAAGAGTGCTCGCAACTTTTGGAAAACCAACTGGGCAATGACT
ACGTACTGCAGCCCTCCAATGTGCCGGTGGCCCAGGATGATGGCAACTAT
TTGTTCCAGCCATCGAATAGACCCGTGGAGGAGCCCCTCCGGTTAAATCG
GTGCACCAACAGACAGCCCGGATATGGAACACTGAAGCGCAGTGCCAGCG
ACGCATCCGCCGCCAGTCACACAAGATCCAATGCCGACGATGAGCTGGCC
GAGATTATGCACGATTTTAAGAACAACGTGCTCTCCATTCGGGACGTGGA
AGTGCTGGTGGAACGCTGGAAGCACCGCAACGATGTACAGCAGAGCTTCC
GGGAGAAACAGGATCAGATCGACCAGCTGCGACGCGAGTACGAGCGCATC
CAGGAGCAGGTGAAGTCTCATCTGAAGCGCGAAACGCCTTTCGAGCGGAT
CAAGAAGTTCTTCTTGCGATCCAAGACACCTGGGGGAAACGACAGCCTGC
TGGACGAGACCAAGTCATCGATAGCCACAAGCTGTAGCTTCAAGTCCGCG
GGGGGCGTGAGCTCCAGCGCAGGAGCTGGACGTCCCATCAGTTCGCTGAG
CCTACAGAGTGTGTCCAGCTCGAGTTCCTCCTCCGGCAGACTAAGCACCG
GCAGCAATTGCAGTGGTGCCTCGCTGGGAGATTCGGGTACCCACTCGGAT
CACGAGGATCGTCGCTTCCCGCACTGCCGGATGATGGACAACTACATGGT
GCCACCGACACCGAGACCCGTCTTTACGCCCAGCTCAACGCCCGGTGATG
AGCGTCATCAGATTGTATTCCCCTCGCCCATGTCCAGTTGCCAGCGCTTG
AACACACCCACCAGTCCCACGGGATCCGAGCACTACCAAATGTTCCCCTC
GAACATACCCGTGTACGGCAGCCAGCCACTGGTTGGATCCCAGAGCAGCA
ACTACCTGAACACCATCATGGAGGCCAAGGAGCAGGCGGAGACACAGCAC
TACCAAAACCAGAACGGAGTCACCCTGCAGCCCATTAAGCTGAACGAGCG
ATCGAACATCATCTACGGCAAGCTAACCAAGAGCAGCTCCGCCAGCGGAT
GCAGCTCCTTCAAACCCAAGCAGATCCCAGTACCATGTCCCCAGGTGGGC
AGCATCGAGGTCCAGGCCGAGGTCTACCAGAATGTGGGTGACGTTGCTCC
GGAAAAGGACTCCAAGGCAGAGGAGGAAACGCCAAACTACATGAACTGCG
CAAGCTTTCTAGACCAT
BO23040.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 02:53:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stumps-RC | 3636 | CG31317-PC | 1..3633 | 17..3649 | 18165 | 100 | Plus |
| stumps-RE | 3663 | CG31317-PE | 40..3660 | 26..3649 | 18040 | 99.9 | Plus |
| stumps-RB | 3039 | CG31317-PB | 46..3036 | 659..3649 | 14955 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 02:53:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stumps-RC | 4679 | CG31317-RC | 463..4095 | 17..3649 | 18165 | 100 | Plus |
| stumps-RE | 4594 | CG31317-RE | 390..4010 | 26..3649 | 18040 | 99.9 | Plus |
| stumps-RB | 3787 | CG31317-RB | 213..3203 | 659..3649 | 14955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 02:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14604693..14607495 | 847..3649 | 14015 | 100 | Plus |
| 3R | 32079331 | 3R | 14592281..14592520 | 26..265 | 1200 | 100 | Plus |
| 3R | 32079331 | 3R | 14593002..14593215 | 446..659 | 1070 | 100 | Plus |
| 3R | 32079331 | 3R | 14604416..14604604 | 658..846 | 945 | 100 | Plus |
| 3R | 32079331 | 3R | 14592661..14592842 | 266..447 | 910 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 02:53:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2291..2359 | 492..559 | 135 | 70 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2448..2476 | 518..546 | 118 | 89.7 | Plus |
BO23040.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-03 14:59:01 Download gff for
BO23040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stumps-RC | 461..4093 | 17..3651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 21:29:45 Download gff for
BO23040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stumps-RC | 463..4095 | 17..3651 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 03:38:05 Download gff for
BO23040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stumps-RC | 463..4095 | 17..3651 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 03:38:05 Download gff for
BO23040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14592275..14592520 | 20..265 | 98 | -> | Plus |
| 3R | 14592661..14592842 | 266..447 | 100 | -> | Plus |
| 3R | 14593004..14593215 | 448..659 | 100 | -> | Plus |
| 3R | 14604418..14604604 | 660..846 | 100 | -> | Plus |
| 3R | 14604693..14607495 | 847..3651 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 21:29:45 Download gff for
BO23040.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10418726..10418937 | 448..659 | 100 | -> | Plus |
| arm_3R | 10417997..10418242 | 20..265 | 98 | -> | Plus |
| arm_3R | 10418383..10418564 | 266..447 | 100 | -> | Plus |
| arm_3R | 10430140..10430326 | 660..846 | 100 | -> | Plus |
| arm_3R | 10430415..10433217 | 847..3651 | 99 | | Plus |
BO23040.pep Sequence
Translation from 16 to 3667
> BO23040.pep
MSVDNPYYFCNETKSPRTPDSQSSSRGFSIFKRRNSKGSSPRPLVMTNPE
QMRLITSANLDTTATMALGSPRGSFNSLAGYPQHAIELQTMNMYRQRSAN
SHSEFRERLNSCNETHSSQCPGGGGASVAGDHDEVFNPLTSPTSSKSHRH
HTLPSGGTRRHSLGNWAQHQHQQQHQQNSGAMGLGSPDEVPSMMAPRPPL
LSPNKFRGSSHRRRDNCGNVNNTSGSSASGFLGSPGYNMDDILIITAKHS
ERAYLRATFLKNHFDKITKQRGRKPFNFLHIKIDDGPFSEEIAHKYQNTA
LQIVILCPALLALPHSFLMTQLSAIIRVEKVLAILLDVSEEKVKEMHKSA
LPSYYKWRRCVVRDNDQVQISNILGIATDILGRALCQRPPCQDSSGGGGG
GLSRSFSSCTEGFTVLPKKVKLGQNKVVALLAEPLEKNDTLKLQVEKSGE
LIELRNFKCRNPYTLQFNIPEACMEISTMIEIRIEKNNKSLGARPIKCES
RLRELEQLLRIEDSPIEFMCHALGIGPVERDALDQHLLQCFQRNMPPNFH
LLSGPSERQPHFFTRLESSPEEYPTLLHFAARWGLNRLCIQLMECPGGDT
ACGVRNCAGRTPAELAEQEGHHKLAQNIVSFAEFHELTTMYHYFKGVTPP
GESCPKPSANVVIEAHPVKAGKTNKPPKELPTAEYMEMSSGSERENTPEV
RTKTETLAISNLNYISVETEDENLQASVAEKKVESEKKLPEAGNQPGPEK
TTNELRINEPPYYQSKEQNQQPKELKNQSKSLDEVDAAPLYQTDKFSQEC
SQLLENQLGNDYVLQPSNVPVAQDDGNYLFQPSNRPVEEPLRLNRCTNRQ
PGYGTLKRSASDASAASHTRSNADDELAEIMHDFKNNVLSIRDVEVLVER
WKHRNDVQQSFREKQDQIDQLRREYERIQEQVKSHLKRETPFERIKKFFL
RSKTPGGNDSLLDETKSSIATSCSFKSAGGVSSSAGAGRPISSLSLQSVS
SSSSSSGRLSTGSNCSGASLGDSGTHSDHEDRRFPHCRMMDNYMVPPTPR
PVFTPSSTPGDERHQIVFPSPMSSCQRLNTPTSPTGSEHYQMFPSNIPVY
GSQPLVGSQSSNYLNTIMEAKEQAETQHYQNQNGVTLQPIKLNERSNIIY
GKLTKSSSASGCSSFKPKQIPVPCPQVGSIEVQAEVYQNVGDVAPEKDSK
AEEETPNYMNCASFLDH
BO23040.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 02:46:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stumps-PC | 1211 | CG31317-PC | 1..1211 | 1..1211 | 6369 | 100 | Plus |
| stumps-PE | 1220 | CG31317-PE | 14..1220 | 4..1211 | 6340 | 99.9 | Plus |
| stumps-PB | 1012 | CG31317-PB | 16..1012 | 215..1211 | 5222 | 100 | Plus |
| stumps-PD | 1029 | CG31317-PD | 33..1029 | 215..1211 | 5217 | 99.9 | Plus |
| stumps-PF | 973 | CG31317-PF | 1..973 | 239..1211 | 5090 | 100 | Plus |
