BO23106.complete Sequence
3133 bp assembled on 2010-07-16
GenBank Submission: KX795235
> BO23106.complete
GAAGTTATCAGTCGACATGACTGCTAGGATGATCTCAATATGCGGCCTGG
TCATGGCTTTGATGATGGCTTCCGTTTTGGCCAGCTCATCGCGTTTCCAG
CGAGTGCCCCAAAGTCAGTCCGTGGTGGAAAATGAATCCGTGAAATTCGA
GTGCGAATCGACCGACTCCTACAGTGAACTGCACTACGACTGGTTGCATA
ATGGTCATCGGATTGCGTATGACAAGCGTGTCCATCAAATCGGTTCCAAT
TTGCATATCGAGGCGGTGCGGCGCACGGAGGATGTTGGCAACTATGTTTG
CATCGCGACAAATTTGGCCAGCGGCGCCAGGGAGGCGTCTCCGCCCGCCA
AACTGAGCGTGATATATCTTGAATCGGCCAGTGTTCAGCTGCTGGGCAGC
AATCGCAACGAGCTGCTGCTCAAGTGCCACGTGGAGGGCGCCTCAGGAGA
TTTGGAACCGCTAGAGATCGAATGGTATCGCAACAGCGAGAAACTTAGCA
CCTGGAAGAACGTCCAGCTGGATCAGCATCGCCTGATAATCCGACAGCCG
GGAAGCGAGGACGATGGCCTGTACCGCTGCACCGCCTCCAATGCGGCGGG
TCGAGTGATGAGCAAGCAGGGCTATGTCTACCAGTCCAGTGTGAAGTGCC
TGCCCCGACTTCCTAGGCGCAAGAACGAAAAGATGATGGAGTCCTGGGAC
AAACAGACCTTCCTGTGCCGCGGTAAGCGCGGTGGAGCTGCTGGACTAGA
GGCACTACCCGCCGCTCCCGAGGATCTGCGCATTGTGCAAGGACCCATTG
GTCAGTCGATTATCAAGGAGGGTGAGCCCACGGCTTTGACCTGTCTGTAT
GAACTGCCCGACGAGCTGAAGAACCAGCGCATTCAACTCCGTTGGCGCAA
AGATGGCAAACTTTTGCGTCAAGTGGAACTGGGTGGCTCGGCGCCCATTC
CAGGTCACTCCTTCGATTCCGGCAAGGATGCTCTGTTGCGTGAGGACGCC
CGTCTAGTGCTGCACAAGCAGAATGGCACCCTAAGCTTTGCCAGCATTAT
TGCCAGTGATGCGGGTCAGTACCAGTGTCAGTTGCAGCTAGAAGCTCATG
CTCCGATTAACTCATCTCCTGGCATCTTGGAGGTCATCGAGCAGCTAAAG
TTTGTTCCTCAGCCCACGTCCAAGAATTTGGAGCTGGATGCAGTGGTGGC
CAAGGTTCACTGCAAGGCGCAGGGCACTCCAACGCCGCAGGTGCAATGGG
TTAGGGATGGGGAAAATACCACTTTACCCGACCATGTAGAAGTGGATGCC
AATGGAACACTGATTTTCAGAAACGTTAACTCGGAACATCGCGGCAACTA
CACTTGCTTGGCCACCAACAGCCAAGGACAGATAAATGCCACTGTGGCTA
TAAATGTGGTGGTCACTCCCAAATTTAGTGTGCCCCCAGTGGGACCCATC
GAGACTTCGGAGCAGGGCACCGTGGTGATGCATTGCCAGGCGATTGGGGA
CCCCAAGCCGACAATTCAGTGGGACAAGGATCTAAAGTATCTGAGTGAGA
ACAATACGGACCGCGAAAGATTTAGGTTCCTGGAGAACGGCACTCTGGAG
ATACGGAATGTCCAGGTGGAGGACGAGGGTAGCTACGGCTGCACAATTGG
AAATAGTGCAGGACTCAAGCGAGAGGATGTCCAGTTGGTAGTGAAGACAA
CCGGTGACGGTTTCGCTCCAGAGGAATCCGGAGGTGATGGCTTCCTGGTC
ACCCGAGCTGTACTGATCACCATGACGGTGGCCCTGGCCTACATAGTGCT
CGTGGTGGGCCTGATGCTGTGGTGTCGCTATCGCCGTCAAGCCAGAAAAG
CCCGTTTAAACGATCTGAGCACAAAGGAAGCTGGCGGGGATCAGCCGGAT
GTTGCTGGCAATGGCAAAGGCTCCGAGCAGGAGCCCTGCCTGTCTAAGCA
GCACAATGGCCACAGCAAATCCAGATCCAAGTCCAGTGGAGATGCCCAGA
AATCCGATGACACAGCCTGCAGCCAGCAGTCGAGGGCCTCAAAGAAATCG
GCACATATTTACGAGCAACTGGCTCTGCCAAGATCCGGGCTCAGTGAACT
CATACAAATTGGACGCGGCGAGTTTGGGGATGTGTTTGTGGGCAAACTTA
AGGCTACCTTAGTCACCTCGCCCTCGGACAAGGATGCGGATACGGAAAAG
CAGCACAGCAACAGTGAAAATGGCAGTGGAGGCAGCGGAAGTGGAAGCAC
CACGCTAAGTACTCTAAATGAGAAGCGTCGCTCCAAGACCTCCATGGACG
ACATTGAGGAGATCAAGGAGGAGGAGCAGGATCAGCACAATCAATCGGGT
CTCGAGCAGCTCGTTCTGGTCAAAGCCCTGAATAAAGTGAAGGATGAACA
GGCCTGCCAGGAGTTTCGACGACAGTTAGATCTGCTGCGCGCCATCTCGC
ACAAGGGAGTAGTACGTCTGTTTGGCCTGTGTCGCGAAAAGGATCCGCAC
TACATGGTGCTGGAGTACACGGATTGGGGCGATCTCAAGCAGTTCCTGCT
GGCCACCGCCGGAAAAGTGAACACTGCCACCGCGGGCAGCTCCTCACCGC
CGCCACTCACCACCAGTCAGGTTTTGGCCGTCGCCTATCAAATTGCCCGA
GGAATGGACGCCATCTACAGAGCTCGCTTCACCCATAGGGATCTGGCCAC
TCGCAACTGCGTAATTTCCAGTGAGTTTATAGTGAAGGTATCCTATCCGG
CTCTCTGCAAGGACAAGTATAGCCGCGAGTACCACAAACACCGCAACACG
CTGCTCCCGATCCGCTGGCTGGCGCCCGAGTGCATCCAGGAAGACGAGTA
CACCACCAAGAGCGACATCTTTGCCTACGGTGTGGTGGTGTGGGAGCTCT
TCAACCAGGCCACCAAGCTGCCCCACGAGGAGCTGACCAACGAGCAGGTG
GTGCAGCGTTCCCAGGCGGGCTCCTTGGAGTGGTCAGTGGCCGAGGCGAC
GCCCGATAGCCTGCGAGAGATATTGCTGTCCTGTTGGGTGTCCAATCCGA
AGGAGCGACCTTCGTTCAGCCAACTGGGAGCTGCTCTCAGCAAGGCGATG
CAGAGTGCCGAGAAGGCAAGCTTTCTAGACCAT
BO23106.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:43:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otk-RA | 3102 | CG8967-PA | 1..3099 | 17..3115 | 15495 | 100 | Plus |
| otk-RB | 3060 | CG8967-PB | 1..3009 | 17..3025 | 15045 | 100 | Plus |
| otk2-RA | 1302 | CG8964-PA | 655..1006 | 1349..1700 | 380 | 73.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:43:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otk-RA | 4671 | CG8967-RA | 918..4016 | 17..3115 | 15495 | 100 | Plus |
| otk-RB | 4769 | CG8967-RB | 918..3926 | 17..3025 | 15045 | 100 | Plus |
| otk-RB | 4769 | CG8967-RB | 4024..4114 | 3025..3115 | 455 | 100 | Plus |
| otk2-RA | 1968 | CG8964-RA | 1039..1390 | 1349..1700 | 380 | 73.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:43:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12002784..12004218 | 2689..1255 | 7175 | 100 | Minus |
| 2R | 25286936 | 2R | 12005188..12006078 | 1256..366 | 4455 | 100 | Minus |
| 2R | 25286936 | 2R | 12002387..12002725 | 3025..2687 | 1695 | 100 | Minus |
| 2R | 25286936 | 2R | 12013759..12013921 | 365..203 | 815 | 100 | Minus |
| 2R | 25286936 | 2R | 12013988..12014125 | 205..68 | 690 | 100 | Minus |
| 2R | 25286936 | 2R | 12002128..12002218 | 3115..3025 | 455 | 100 | Minus |
| 2R | 25286936 | 2R | 12023724..12024075 | 1700..1349 | 380 | 73.9 | Minus |
| 2R | 25286936 | 2R | 12018878..12018929 | 68..17 | 260 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:43:11 has no hits.
BO23106.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-16 17:22:43 Download gff for
BO23106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otk-RA | 896..3994 | 17..3117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:38 Download gff for
BO23106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otk-RA | 918..4016 | 17..3117 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:55:44 Download gff for
BO23106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| otk-RA | 918..4016 | 17..3117 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:55:44 Download gff for
BO23106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12002125..12002217 | 3026..3117 | 97 | <- | Minus |
| 2R | 12002387..12002723 | 2689..3025 | 100 | <- | Minus |
| 2R | 12002785..12004217 | 1256..2688 | 100 | <- | Minus |
| 2R | 12005189..12006078 | 366..1255 | 100 | <- | Minus |
| 2R | 12013759..12013920 | 204..365 | 100 | <- | Minus |
| 2R | 12013990..12014124 | 69..203 | 100 | <- | Minus |
| 2R | 12018878..12018929 | 17..68 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:38 Download gff for
BO23106.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 7889630..7889722 | 3026..3117 | 97 | <- | Minus |
| arm_2R | 7889892..7890228 | 2689..3025 | 100 | <- | Minus |
| arm_2R | 7890290..7891722 | 1256..2688 | 100 | <- | Minus |
| arm_2R | 7892694..7893583 | 366..1255 | 100 | <- | Minus |
| arm_2R | 7901264..7901425 | 204..365 | 100 | <- | Minus |
| arm_2R | 7901495..7901629 | 69..203 | 100 | <- | Minus |
| arm_2R | 7906383..7906434 | 17..68 | 100 | | Minus |
BO23106.pep Sequence
Translation from 16 to 3133
> BO23106.pep
MTARMISICGLVMALMMASVLASSSRFQRVPQSQSVVENESVKFECESTD
SYSELHYDWLHNGHRIAYDKRVHQIGSNLHIEAVRRTEDVGNYVCIATNL
ASGAREASPPAKLSVIYLESASVQLLGSNRNELLLKCHVEGASGDLEPLE
IEWYRNSEKLSTWKNVQLDQHRLIIRQPGSEDDGLYRCTASNAAGRVMSK
QGYVYQSSVKCLPRLPRRKNEKMMESWDKQTFLCRGKRGGAAGLEALPAA
PEDLRIVQGPIGQSIIKEGEPTALTCLYELPDELKNQRIQLRWRKDGKLL
RQVELGGSAPIPGHSFDSGKDALLREDARLVLHKQNGTLSFASIIASDAG
QYQCQLQLEAHAPINSSPGILEVIEQLKFVPQPTSKNLELDAVVAKVHCK
AQGTPTPQVQWVRDGENTTLPDHVEVDANGTLIFRNVNSEHRGNYTCLAT
NSQGQINATVAINVVVTPKFSVPPVGPIETSEQGTVVMHCQAIGDPKPTI
QWDKDLKYLSENNTDRERFRFLENGTLEIRNVQVEDEGSYGCTIGNSAGL
KREDVQLVVKTTGDGFAPEESGGDGFLVTRAVLITMTVALAYIVLVVGLM
LWCRYRRQARKARLNDLSTKEAGGDQPDVAGNGKGSEQEPCLSKQHNGHS
KSRSKSSGDAQKSDDTACSQQSRASKKSAHIYEQLALPRSGLSELIQIGR
GEFGDVFVGKLKATLVTSPSDKDADTEKQHSNSENGSGGSGSGSTTLSTL
NEKRRSKTSMDDIEEIKEEEQDQHNQSGLEQLVLVKALNKVKDEQACQEF
RRQLDLLRAISHKGVVRLFGLCREKDPHYMVLEYTDWGDLKQFLLATAGK
VNTATAGSSSPPPLTTSQVLAVAYQIARGMDAIYRARFTHRDLATRNCVI
SSEFIVKVSYPALCKDKYSREYHKHRNTLLPIRWLAPECIQEDEYTTKSD
IFAYGVVVWELFNQATKLPHEELTNEQVVQRSQAGSLEWSVAEATPDSLR
EILLSCWVSNPKERPSFSQLGAALSKAMQSAEKASFLDH
BO23106.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| otk-PA | 1033 | CG8967-PA | 1..1033 | 1..1033 | 5346 | 100 | Plus |
| otk-PB | 1019 | CG8967-PB | 1..1003 | 1..1003 | 5193 | 100 | Plus |
| otk2-PA | 433 | CG8964-PA | 25..431 | 246..665 | 1064 | 53.6 | Plus |
| Ror-PA | 685 | CG4926-PA | 356..681 | 717..1035 | 390 | 28.2 | Plus |
| Nrk-PA | 724 | CG4007-PA | 471..724 | 782..1037 | 361 | 33.1 | Plus |
