BO23107.complete Sequence
3148 bp assembled on 2010-08-02
GenBank Submission: KX798308
> BO23107.complete
GAAGTTATCAGTCGACATGGCCAACAAGCTGAGGAAATCGAACGCCATCG
AATGGGCAACGGCCACCGGCACAGTACCGCTCCTGGAAAGGAGCTGCTGC
CACAGCGAGGACGCCGCACTGGAGCCCCAAGCGAGCAAAACCAGCCATAG
AGAACAAGCCCCCATCCTGCGCCACCTGAGCCAACTGAGCCACCTGCTCA
TCATCGCCGGACTGCTGATCGTCTGCTTGGCGGGCGTGACGGAGGGCCGC
CGGCATGCGCCGCTCATGTTCGAGGAGTCCGACACGGGCAGGCGGTCCAA
CCGACCAGCGGTCACCGAATGCCAGTTTGGCAAAGTTTTGCGCGAATTGG
GGTCCACCTGGTATGCGGATTTGGGTCCACCCTTCGGAGTTATGTACTGC
ATCAAGTGTGAATGTGTGGCGATACCCAAGAAGCGGCGCATCGTTGCACG
CGTCCAGTGTCGCAATATCAAAAACGAGTGCCCGCCGGCCAAATGCGATG
ATCCCATCTCGTTGCCCGGAAAATGCTGCAAGACCTGTCCCGGCGATCGA
AACGATACGGATGTAGCCTTGGATGTGCCCGTGCCCAATGAAGAGGAAGA
GCGCAACATGAAACATTACGCTGCGTTGCTAACGGGCCGCACCTCCTATT
TCCTCAAGGGTGAGGAAATGAAGTCCATGTACACCACCTACAATCCGCAG
AATGTGGTGGCCACCGCCCGTTTCCTGTTCCACAAGAAGAATCTATACTA
CTCCTTCTACACCTCATCGCGAATCGGTCGTCCGCGTGCCATTCAATTCG
TTGATGATGCGGGTGTTATCCTGGAGGAGCATCAACTGGAGACCACCTTG
GCGGGCACTCTCAGTGTCTATCAGAATGCCACGGGCAAGATCTGCGGTGT
CTGGCGACGAGTTCCACGTGATTACAAGCGCATTCTGCGCGACGATCGTC
TCCATGTTGTCCTCCTCTGGGGCAACAAACAGCAGGCCGAGTTGGCTCTG
GCCGGAAAGGTGGCCAAATACACGGCCCTGCAGACGGAGTTGTTCAGTTC
GCTACTGGAGGCACCACTTCCCGATGGCAAAACGGATCCCCAGCTGGCCG
GAGCCGGTGGCACAGCGATCGTGTCCACCAGCAGCGGTGCCGCCTCATCG
ATGCATCTCACCCTGGTCTTCAATGGTGTCTTTGGTGCCGAGGAGTACGC
CGATGCAGCACTGAGTGTGAAAATTGAGCTGGCAGAACGGAAGGAGGTGA
TCTTCGATGAGATTCCACGTGTGCGCAAACCCTCTGCCGAGATCAATGTC
CTGGAGCTGTCGTCGCCCATTTCCATACAGAATCTTCGACTGATGTCGCG
TGGCAAACTCCTGCTGACCGTGGAGTCCAAGAAGTACCCACATCTGCGCA
TCCAGGGACACATCGTGACCCGAGCCAGCTGCGAAATCTTCCAGACCCTG
CTGGCGCCGCACAGTGCCGAATCCTCGACCAAGAGCAGCGGTTTGGCGTG
GGTCTACTTGAACACCGATGGATCTCTGGCCTACAACATCGAAACGGAGC
ACGTGAACACCCGGGATAGGCCCAACATCAGTTTGATTGAGGAGCAGGGC
AAGCGGAAGGCCAAGCTGGAGGATCTGACGCCGAGCTTCAACTTCAACCA
GGCCATTGGTAGTGTGGAGAAGTTGGGTCCCAAGGTCCTCGAGTCGCTCT
ATGCCGGCGAACTGGGCGTTAATGTGGCCACCGAGCATGAGACGAGCCTG
ATCCGTGGCCGCCTAGTGCCCCGTCCAGTGGCCGATGCTCGGGACTCGGC
GGAACCCATTCTGCTGAAGCGACAGGAGCACACGGATGCACAGAATCCAC
ATGCCGTCGGCATGGCCTGGATGTCCATTGACAACGAGTGCAATCTGCAC
TACGAGGTGACGCTCAACGGTGTGCCCGCCCAGGATCTGCAGCTGTATCT
GGAGGAGAAGCCCATCGAGGCGATTGGAGCGCCAGTGACGAGGAAATTGC
TCGAGGAATTCAACGGCTCCTATCTGGAAGGCTTCTTCCTCAGCATGCCA
TCCGCCGAACTGATCAAGCTGGAGATGAGCGTCTGCTATCTGGAGGTCCA
TTCCAAGCACTCCAAACAGCTTCTGCTGCGCGGCAAACTGAAGAGCACCA
AGGTGCCGGGTCACTGCTTCCCCGTCTACACGGACAACAATGTTCCCGTG
CCTGGCGACCACAATGATAACCATTTGGTGAACGGAGAGACCAAGTGCTT
CCACTCCGGACGCTTCTACAACGAATCGGAGCAGTGGCGCAGTGCCCAGG
ATTCCTGTCAGATGTGCGCCTGTTTGCGTGGCCAATCCAGTTGCGAGGTG
ATCAAGTGTCCGGCTCTCAAGTGCAAGTCCACGGAGCAACTGCTTCAGCG
TGATGGTGAATGCTGTCCCAGCTGTGTGCCCAAGAAGGAGGCCGCCGACT
ATTCAGCGCAATCCTCGCCAGCCACCAATGCCACCGATTTGCTGCAACAG
CGACGCGGCTGCCGCCTGGGCGAGCAGTTCCATCCCGCCGGTGCCAGTTG
GCATCCATTCCTGCCGCCCAATGGCTTCGATACGTGCACCACCTGCAGCT
GCGATCCCCTGACCCTCGAGATTCGCTGTCCCCGGCTCGTCTGCCCGCCG
TTGCAGTGCAGCGAGAAGTTGGCCTATCGTCCAGACAAGAAGGCATGCTG
CAAGATCTGTCCGGAGGGCAAGCAGAGCAGTTCCAATGGACACAAGACGA
CGCCGAACAATCCCAATGTGCTGCAGGATCAGGCCATGCAGCGATCGCCG
AGTCACAGTGCCGAGGAGGTTCTGGCCAACGGCGGATGCAAGGTGGTCAA
CAAGGTGTACGAGAACGGCCAGGAGTGGCATCCGATCCTGATGTCCCACG
GCGAGCAGAAGTGCATCAAGTGCCGCTGCAAGGACTCCAAGGTGAACTGC
GATCGCAAACGCTGCTCCCGCTCCACGTGCCAGCAGCAGACACGCGTGAC
CAGCAAGCGGCGTCTGTTCGAGAAACCGGACGCAGCTGCTCCGGCCATCG
ATGAGTGCTGCTCCACCCAGTGCCGGAGATCGAGGCGCCACCACAAGAGG
CAGCCGCATCATCAGCAGCGATCCTCCAGCGCAAGCTTTCTAGACCAT
BO23107.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:39:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sog-RB | 3117 | CG9224-PB | 1..3114 | 17..3130 | 15570 | 100 | Plus |
| sog-RE | 3117 | CG9224-PE | 1..3114 | 17..3130 | 15570 | 100 | Plus |
| sog-RA | 3117 | CG9224-PA | 1..3114 | 17..3130 | 15570 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:39:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sog-RB | 4841 | CG9224-RB | 1133..4248 | 15..3130 | 15580 | 100 | Plus |
| sog-RE | 5816 | CG9224-RE | 815..3930 | 15..3130 | 15580 | 100 | Plus |
| sog-RA | 4523 | CG9224-RA | 815..3930 | 15..3130 | 15580 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:39:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15605488..15607806 | 2933..615 | 11595 | 100 | Minus |
| X | 23542271 | X | 15625430..15625726 | 311..15 | 1485 | 100 | Minus |
| X | 23542271 | X | 15605169..15605368 | 3130..2931 | 1000 | 100 | Minus |
| X | 23542271 | X | 15613218..15613351 | 554..421 | 670 | 100 | Minus |
| X | 23542271 | X | 15614797..15614907 | 421..311 | 555 | 100 | Minus |
| X | 23542271 | X | 15607974..15608034 | 614..554 | 305 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 08:39:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| gypsy8 | 4955 | gypsy8 GYPSY8 4955bp | 3984..4026 | 2997..2955 | 116 | 74.4 | Minus |
BO23107.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 10:19:13 Download gff for
BO23107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sog-RA | 817..3930 | 17..3132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:24 Download gff for
BO23107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sog-RA | 817..3930 | 17..3132 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:33 Download gff for
BO23107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| sog-RA | 817..3930 | 17..3132 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:33 Download gff for
BO23107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15605166..15605366 | 2933..3132 | 99 | <- | Minus |
| X | 15605489..15607806 | 615..2932 | 100 | <- | Minus |
| X | 15607974..15608033 | 555..614 | 100 | <- | Minus |
| X | 15613218..15613350 | 422..554 | 100 | <- | Minus |
| X | 15614797..15614906 | 312..421 | 100 | <- | Minus |
| X | 15625430..15625724 | 17..311 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:24 Download gff for
BO23107.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15499199..15499399 | 2933..3132 | 99 | <- | Minus |
| arm_X | 15499522..15501839 | 615..2932 | 100 | <- | Minus |
| arm_X | 15502007..15502066 | 555..614 | 100 | <- | Minus |
| arm_X | 15507251..15507383 | 422..554 | 100 | <- | Minus |
| arm_X | 15508830..15508939 | 312..421 | 100 | <- | Minus |
| arm_X | 15519463..15519757 | 17..311 | 100 | | Minus |
BO23107.pep Sequence
Translation from 16 to 3148
> BO23107.pep
MANKLRKSNAIEWATATGTVPLLERSCCHSEDAALEPQASKTSHREQAPI
LRHLSQLSHLLIIAGLLIVCLAGVTEGRRHAPLMFEESDTGRRSNRPAVT
ECQFGKVLRELGSTWYADLGPPFGVMYCIKCECVAIPKKRRIVARVQCRN
IKNECPPAKCDDPISLPGKCCKTCPGDRNDTDVALDVPVPNEEEERNMKH
YAALLTGRTSYFLKGEEMKSMYTTYNPQNVVATARFLFHKKNLYYSFYTS
SRIGRPRAIQFVDDAGVILEEHQLETTLAGTLSVYQNATGKICGVWRRVP
RDYKRILRDDRLHVVLLWGNKQQAELALAGKVAKYTALQTELFSSLLEAP
LPDGKTDPQLAGAGGTAIVSTSSGAASSMHLTLVFNGVFGAEEYADAALS
VKIELAERKEVIFDEIPRVRKPSAEINVLELSSPISIQNLRLMSRGKLLL
TVESKKYPHLRIQGHIVTRASCEIFQTLLAPHSAESSTKSSGLAWVYLNT
DGSLAYNIETEHVNTRDRPNISLIEEQGKRKAKLEDLTPSFNFNQAIGSV
EKLGPKVLESLYAGELGVNVATEHETSLIRGRLVPRPVADARDSAEPILL
KRQEHTDAQNPHAVGMAWMSIDNECNLHYEVTLNGVPAQDLQLYLEEKPI
EAIGAPVTRKLLEEFNGSYLEGFFLSMPSAELIKLEMSVCYLEVHSKHSK
QLLLRGKLKSTKVPGHCFPVYTDNNVPVPGDHNDNHLVNGETKCFHSGRF
YNESEQWRSAQDSCQMCACLRGQSSCEVIKCPALKCKSTEQLLQRDGECC
PSCVPKKEAADYSAQSSPATNATDLLQQRRGCRLGEQFHPAGASWHPFLP
PNGFDTCTTCSCDPLTLEIRCPRLVCPPLQCSEKLAYRPDKKACCKICPE
GKQSSSNGHKTTPNNPNVLQDQAMQRSPSHSAEEVLANGGCKVVNKVYEN
GQEWHPILMSHGEQKCIKCRCKDSKVNCDRKRCSRSTCQQQTRVTSKRRL
FEKPDAAAPAIDECCSTQCRRSRRHHKRQPHHQQRSSSASFLDH
BO23107.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-28 01:09:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| sog-PB | 1038 | CG9224-PB | 1..1038 | 1..1038 | 5519 | 100 | Plus |
| sog-PE | 1038 | CG9224-PE | 1..1038 | 1..1038 | 5519 | 100 | Plus |
| sog-PA | 1038 | CG9224-PA | 1..1038 | 1..1038 | 5519 | 100 | Plus |
