BO23110.complete Sequence
3340 bp assembled on 2010-07-16
GenBank Submission: KX796899
> BO23110.complete
GAAGTTATCAGTCGACATGGCGCACCAGCAGCAACAACAACTGGCTCCAT
CGGTCAACTGTTCACTGGACGATATCGATCTGACGGCCCTAAAAGATCCA
GCTGGCATCTTTGAGCTCATCGAAGTTGTGGGCAATGGCACCTACGGTCA
GGTCTACAAGGGCCGTCACACGAAGACTGGTCAATTGGCTGCCATAAAGG
TGATGGACGTCACCGAGGACGAAGAGGAGGAGATCAAGCTGGAGATCAAT
GTGCTAAAGAAATACTCGAATCACCGCAACATCGCCACCTACTACGGAGC
CTTCATCAAGAAGTCGCCACCTGGGAAGGACGATCAGCTCTGGCTGGTGA
TGGAGTACTGTGGTGCTGGATCGGTAACGGATCTGGTCAAGTCCACCAAG
GGTCAGAGCCTGAAGGAGGAGTGGATCGCCTACATCTGCCGCGAGATTCT
GCGGGGCCTGAGCTACCTGCACTCGAACAAAGTCATCCATCGCGACATCA
AGGGGCAGAATGTGCTCCTCACCGACAACGCCGAGGTGAAGCTGGTGGAC
TTTGGTGTCTCCGCCCAGCTGGATCGCACGATAGGACGGCGCAACACATT
CATCGGTACTCCCTACTGGATGGCCCCCGAGGTCATTGCCTGCGACGAGA
ATCCCGACGCCACGTACGACAATCGCTCCGATCTGTGGTCGCTGGGCATC
ACCGCTCTGGAGATGGCTGAGTCACAGCCCCCGCTCTGCGATCTGCATCC
GATGCGCGCCCTCTTCCTGATTCCGCGCAACTCGCCACCCAGGCTCAAAT
CGAAGAAGTGGTCCAAGAAGTTTCACGGCTTTATTGACACGGTGCTAGTT
AAGGACTATCACCAGCGGCCTTACACCGAGAACCTGCTGAAGCACGGCTT
CATCAAGGACCAGCCCACAGATCGCCAGGTGCGCATCCAGCTGAAGGACC
ACATCGATCGCTGCAAGAAGCGCAAGCAGGAGAAGGAGCGCGAGGACTAT
CGCTACTCGGGCTCCGACAACGACGACGACGAACCACAGCTGGCCGGTGA
GCACAGCTCCATTGTCCAGGCACCAGGCGGCGATACGTTGCGCCGCAACT
TCCAGCAGATCCAGGAAGGTCGCCTGGCCGCCGAGCAGCAGCAGCAGCAT
CACCTGATGGCCCAGGCGCAGGCTCAGGCGGCTGCCGCTCATGCCGCTGC
CCAGGCCCAGGCGCAACTCCAGCAGCAGCAACAGCAGGCTGCGGCGGCGG
CAGCAGCGGCGGCCCATGCAGCACAACAGGCTCAGCAGGCCGCACAGCAG
GCGCAGGCCCAGCAGCCACAGGCCAATCGGCAGCCAAAACCGCCATCGCG
CCAGCAGGTTGAGGAGCCGGGTCCGCCAGCACGTCCGCCACAGCGCCTGA
TCGTGGTGCCGGATCCGCCGCACGCCAATCGGCCATTGCCACCGACGCCC
AAGTGCGGCGAGCCGGCGGGACAGACGCCGCAGCAACAGCAGCGCAATTC
GCAGAATAACTTCAAGCCATCGTTACCACCAAGGAGACCTGAGGATCATT
TGGATGTGTTAGCAGCACAATTAAGTGAATTGGGCGTGGTCTTCTCCCAA
CAGCCACAGCCGCAGACGGCCGCCGGTGGTCAGGGATCCCAGCAGCAGGC
GCAGCCGGAGGCGCCGCCTCGCAACAATCGCCAGTCGAGCGGTCTGTCCT
CCTCCGGCGGATCGGCATCCGGAGGCGGCGGTTCGTCGAAGCCCGCAGCC
GCTCTGCCGCAGCAGTCGAACAATCATTTGGGCCAGCCGGTGAATCCGCT
GGATCCCTTGGACAGCAGCGATTCGGACAGCGAGCCGGATGAGCCCAACG
ATCGGGCTAGGAACGATGGAACTCTATTGGCCAGTGATCCGCCCAAGCCA
CTGCCCGGCTTGGGACCCGTCTCCGAGGACGCCAACACGACAACGCCCTT
GAGTCACGGCAGCGGTGGACCGCCCAACCGCCCACTGCCGCCCACGCCCG
ACGACGACGATCAGGCTGGCGATCGGACTTTGATCATGAAGCGCAATCGA
GGAGGAGGCGGTGGCGGCGGCGGCGGCGGAGGAGGCGGTGGCAGCAGCGG
CGTGGGCGCCGATGGCACTGGACTGGGAACTCCTGGGACAAGGACCAGCA
GCGTCCTGCCGGATCTACTCAGCCAGGCATCGCCGGCAACGCCACCACGC
CATGATAAATCATCCAGTGAGGAGAAGCAGCGCAGTTTCCTGACCTTTGG
CTTCGGCGCCGGCGGCTCTGGTCCTTCGCGCCGGGAATCGCACGTCAATG
TCAATGTAACGCCCACCTCCCACGAGGCGGCCAACGATACGCCCGAGATC
CGTAAGTATAAGAAGCGCTTCAATTCGGAAATCCTGTGCGCAGCGCTATG
GGGCGTCAACCTGCTGATTGGAACGGAGAATGGCTTAATGCTGCTAGATC
GATCCGGTCAGGGCAAGGTCTACCAGCTCATCTCGCGACGCCGTTTCCAG
CAAATGGAGGTGCTAGAGGGCCAGAACATATTGGTCACCATATCCGGCAA
GAAGAACCGAGTGCGCGTCTACTACTTGTCCTGGCTAAAGTCGAAGATCT
TGCGCACCGACGGACTCTCCGATCAAGTGGAGCGTCGGAACGGTTGGATC
AACGTGGGTGATCTGCAAGGTGCTGTACATTTTAAGATTGTCAAATACGA
GAGGATTAAGTTCCTAGTGATTGCATTAAAAGACTCTATTGAAATTTATG
CATGGGCTCCCAAACCATATCACAAATTTATGGCATTTAAGAATTTTGGT
GAACTGGAACATCGCCCGCTTTTGGTCGATCTCACCATTGAGGATCAGTC
GAGACTGAAGGTGATCTATGGCTCCGCCGAGGGTTTCCATGCGGTTGATT
TAGATTCAGCTGAAGTATACGATATCTATCTTCCCAAGCATACTCAGGGT
GCAATCATTCCGCATTGTATTGTGGCGCTTCCCAACTCAAATGGCATGCA
ACTGCTGCTGTGCTACGACAATGAGGGCGTCTATGTGAACACTGTGGGCC
GCGTTTCCAAGAACATTGTACTGCAGTGGGGCGAGATGCCCACCTCGGTG
GCCTACATCGGCACTGGACAAATCATGGGCTGGGGCAATAAAGCAATAGA
GATACGTTCCGTTGAGAGCGGCCATTTGGATGGTGTGTTCATGCACAAAA
AGGCGCAGCGCTTGAAATTCCTTTGCGAGCGAAACGACAAAGTATTCTTC
AGCAGTGCCAAAGGTGCTTCATCGTGTCAAATCTACTTTATGACGCTCAA
CAAGCCGGGCATGGCCAATTGGGCAAGCTTTCTAGACCAT
BO23110.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 04:44:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msn-RC | 3309 | CG16973-PC | 1..3306 | 17..3322 | 16530 | 100 | Plus |
| msn-RD | 3309 | CG16973-PD | 1..3306 | 17..3322 | 16530 | 100 | Plus |
| msn-RG | 3306 | CG16973-PG | 1..3303 | 17..3322 | 16450 | 99.9 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 04:44:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msn-RC | 4268 | CG16973-RC | 178..3483 | 17..3322 | 16530 | 100 | Plus |
| msn-RD | 5206 | CG16973-RD | 189..3494 | 17..3322 | 16530 | 100 | Plus |
| msn-RG | 4282 | CG16973-RG | 195..3497 | 17..3322 | 16450 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 04:44:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 2566434..2566935 | 1348..847 | 2510 | 100 | Minus |
| 3L | 28110227 | 3L | 2567367..2567816 | 608..159 | 2250 | 100 | Minus |
| 3L | 28110227 | 3L | 2564396..2564757 | 1903..1542 | 1810 | 100 | Minus |
| 3L | 28110227 | 3L | 2557791..2558037 | 2469..2223 | 1235 | 100 | Minus |
| 3L | 28110227 | 3L | 2567046..2567293 | 848..601 | 1225 | 99.6 | Minus |
| 3L | 28110227 | 3L | 2560116..2560295 | 2224..2045 | 900 | 100 | Minus |
| 3L | 28110227 | 3L | 2566202..2566376 | 1522..1348 | 875 | 100 | Minus |
| 3L | 28110227 | 3L | 2556559..2556731 | 3322..3150 | 865 | 100 | Minus |
| 3L | 28110227 | 3L | 2557341..2557508 | 2791..2624 | 840 | 100 | Minus |
| 3L | 28110227 | 3L | 2557572..2557729 | 2623..2466 | 790 | 100 | Minus |
| 3L | 28110227 | 3L | 2557136..2557287 | 2941..2790 | 760 | 100 | Minus |
| 3L | 28110227 | 3L | 2563818..2563959 | 2044..1903 | 710 | 100 | Minus |
| 3L | 28110227 | 3L | 2556942..2557080 | 3076..2938 | 680 | 99.3 | Minus |
| 3L | 28110227 | 3L | 2585604..2585682 | 95..17 | 395 | 100 | Minus |
| 3L | 28110227 | 3L | 2556792..2556868 | 3151..3075 | 385 | 100 | Minus |
| 3L | 28110227 | 3L | 2579454..2579520 | 161..95 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 04:44:56 has no hits.
BO23110.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-07-16 17:22:46 Download gff for
BO23110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msn-RC | 178..3483 | 17..3324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:08:41 Download gff for
BO23110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msn-RD | 189..3494 | 17..3324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 05:56:23 Download gff for
BO23110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| msn-RD | 189..3494 | 17..3324 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 05:56:23 Download gff for
BO23110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 2566202..2566375 | 1349..1522 | 100 | <- | Minus |
| 3L | 2556557..2556729 | 3152..3324 | 98 | <- | Minus |
| 3L | 2556792..2556866 | 3077..3151 | 100 | <- | Minus |
| 3L | 2556942..2557076 | 2942..3076 | 100 | <- | Minus |
| 3L | 2557136..2557285 | 2792..2941 | 100 | <- | Minus |
| 3L | 2557341..2557508 | 2624..2791 | 100 | <- | Minus |
| 3L | 2557572..2557727 | 2468..2623 | 100 | <- | Minus |
| 3L | 2557793..2558035 | 2225..2467 | 100 | <- | Minus |
| 3L | 2560116..2560295 | 2045..2224 | 100 | <- | Minus |
| 3L | 2563818..2563959 | 1903..2044 | 100 | <- | Minus |
| 3L | 2564397..2564755 | 1544..1902 | 100 | <- | Minus |
| 3L | 2565601..2565621 | 1523..1543 | 100 | <- | Minus |
| 3L | 2566434..2566933 | 849..1348 | 100 | <- | Minus |
| 3L | 2567046..2567288 | 606..848 | 100 | <- | Minus |
| 3L | 2567370..2567814 | 161..605 | 100 | <- | Minus |
| 3L | 2579455..2579520 | 95..160 | 100 | <- | Minus |
| 3L | 2585605..2585682 | 17..94 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:08:41 Download gff for
BO23110.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 2564397..2564755 | 1544..1902 | 100 | <- | Minus |
| arm_3L | 2565601..2565621 | 1523..1543 | 100 | <- | Minus |
| arm_3L | 2566202..2566375 | 1349..1522 | 100 | <- | Minus |
| arm_3L | 2560116..2560295 | 2045..2224 | 100 | <- | Minus |
| arm_3L | 2563818..2563959 | 1903..2044 | 100 | <- | Minus |
| arm_3L | 2556557..2556729 | 3152..3324 | 98 | <- | Minus |
| arm_3L | 2556792..2556866 | 3077..3151 | 100 | <- | Minus |
| arm_3L | 2556942..2557076 | 2942..3076 | 100 | <- | Minus |
| arm_3L | 2557136..2557285 | 2792..2941 | 100 | <- | Minus |
| arm_3L | 2557341..2557508 | 2624..2791 | 100 | <- | Minus |
| arm_3L | 2557572..2557727 | 2468..2623 | 100 | <- | Minus |
| arm_3L | 2557793..2558035 | 2225..2467 | 100 | <- | Minus |
| arm_3L | 2566434..2566933 | 849..1348 | 100 | <- | Minus |
| arm_3L | 2567046..2567288 | 606..848 | 100 | <- | Minus |
| arm_3L | 2567370..2567814 | 161..605 | 100 | <- | Minus |
| arm_3L | 2579455..2579520 | 95..160 | 100 | <- | Minus |
| arm_3L | 2585605..2585682 | 17..94 | 100 | | Minus |
BO23110.pep Sequence
Translation from 16 to 3340
> BO23110.pep
MAHQQQQQLAPSVNCSLDDIDLTALKDPAGIFELIEVVGNGTYGQVYKGR
HTKTGQLAAIKVMDVTEDEEEEIKLEINVLKKYSNHRNIATYYGAFIKKS
PPGKDDQLWLVMEYCGAGSVTDLVKSTKGQSLKEEWIAYICREILRGLSY
LHSNKVIHRDIKGQNVLLTDNAEVKLVDFGVSAQLDRTIGRRNTFIGTPY
WMAPEVIACDENPDATYDNRSDLWSLGITALEMAESQPPLCDLHPMRALF
LIPRNSPPRLKSKKWSKKFHGFIDTVLVKDYHQRPYTENLLKHGFIKDQP
TDRQVRIQLKDHIDRCKKRKQEKEREDYRYSGSDNDDDEPQLAGEHSSIV
QAPGGDTLRRNFQQIQEGRLAAEQQQQHHLMAQAQAQAAAAHAAAQAQAQ
LQQQQQQAAAAAAAAAHAAQQAQQAAQQAQAQQPQANRQPKPPSRQQVEE
PGPPARPPQRLIVVPDPPHANRPLPPTPKCGEPAGQTPQQQQRNSQNNFK
PSLPPRRPEDHLDVLAAQLSELGVVFSQQPQPQTAAGGQGSQQQAQPEAP
PRNNRQSSGLSSSGGSASGGGGSSKPAAALPQQSNNHLGQPVNPLDPLDS
SDSDSEPDEPNDRARNDGTLLASDPPKPLPGLGPVSEDANTTTPLSHGSG
GPPNRPLPPTPDDDDQAGDRTLIMKRNRGGGGGGGGGGGGGGSSGVGADG
TGLGTPGTRTSSVLPDLLSQASPATPPRHDKSSSEEKQRSFLTFGFGAGG
SGPSRRESHVNVNVTPTSHEAANDTPEIRKYKKRFNSEILCAALWGVNLL
IGTENGLMLLDRSGQGKVYQLISRRRFQQMEVLEGQNILVTISGKKNRVR
VYYLSWLKSKILRTDGLSDQVERRNGWINVGDLQGAVHFKIVKYERIKFL
VIALKDSIEIYAWAPKPYHKFMAFKNFGELEHRPLLVDLTIEDQSRLKVI
YGSAEGFHAVDLDSAEVYDIYLPKHTQGAIIPHCIVALPNSNGMQLLLCY
DNEGVYVNTVGRVSKNIVLQWGEMPTSVAYIGTGQIMGWGNKAIEIRSVE
SGHLDGVFMHKKAQRLKFLCERNDKVFFSSAKGASSCQIYFMTLNKPGMA
NWASFLDH
BO23110.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:39:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| msn-PC | 1102 | CG16973-PC | 1..1102 | 1..1102 | 5801 | 100 | Plus |
| msn-PD | 1102 | CG16973-PD | 1..1102 | 1..1102 | 5801 | 100 | Plus |
| msn-PG | 1101 | CG16973-PG | 1..1101 | 1..1102 | 5784 | 99.9 | Plus |
| msn-PH | 1213 | CG16973-PH | 1..1213 | 1..1102 | 4981 | 82.5 | Plus |
| msn-PI | 1200 | CG16973-PI | 1..1200 | 1..1102 | 4912 | 81.4 | Plus |
