BO23111.complete Sequence
3484 bp assembled on 2010-10-20
GenBank Submission: KX799681
> BO23111.complete
GAAGTTATCAGTCGACATGAAATTACGATGCTTTAACCAGGCCCAAACTT
CGCACAGTTGGCACCCCAGATCCGTGTTCAGGGTCGTAAGCAGTTGTCCT
CCCGATCGAAAAAAACGGCCAAGCCCAGCGAGCTGGCAAATCTGTATTGG
CCATCTCCTAACAAATTATCTTGGAATGTTTAAAATGGACTCCGCAGACT
TCTGGCAGCAAGCGCGTGCTCCGTTTGGTCTGCAAACTGCGCTTCACCAA
TACTCTTCCCCCCCGAATCAACAGCCAATATCCCACCACGCCCTGCACCA
CTCCGTTCCGCAGGAGAACGAGCAGTTGGCCGGAGTTCAACCAGAAGGTC
CAGCAGCAGGATCAGGCGTAGTGGGCAACAACAGTTCCATGGCAATTTCC
GGCACCAATTCAACTGTGGGCAGCAAGGCGGAGTCCAGTCACATTCCGCA
GCAGCACTCAGAGCAGCAGTCATATGGAAGCGACTCCTTCCGAGGAACGC
AGTCGCCCCAGCTGAGTAGCCACCACCTGTTGTTTAACGCCGCTGCAGCC
GCTGCTGCGGCGGTCCACCTCAAGTCCACGGCGATGCAGAATAACCTCTC
GCCAATAGGCGATCAGGTGCAAAATAACCTTCGCAACTACGGACAAGGAT
CCTTAAACGCCTTATGTGGGATCAAGCCCAAGCAGGAGATGGATGCGAAG
ACGCCCCTACAGCCGTTGGACGAGTGTCCCCACCCTCTAGTTCAGGCGCA
GGCCCAGTCCCAGTACGGCGGAGACTACTACGACGTGGCCGACCCACAGG
CTAGAGAAATCTCGGAAGGTCGAGCACTGATAATCGGACTCGGAGCACCC
AGTACGGTGTCCACCGACGATGCACAGTCCAGTGCGCCGTCTCATCAGCT
GGCAGGGACTGGCCGAGCATTGCAGACTCATCAGTGCAAGCCAATGTCCC
CTGGAACAGTTGGTAGCTCGAATTTGGGCGCAGGACGAAGATCCGCACCC
ACAACAATAAGCAAGACCTTTTCGCAGGGTCAGCAGTCCCCTCAGCACTC
TACAACGCCATCCGGAGGCAGCACGACGCCCGACATCAAATACAATAACG
ACAAAATGGCCAATGAAATTCAGCTTCAGCTATCCCGTTCGAGCAGCGCA
GCGGCGATCAGTGAACGCACCCTCGAAGAATGTTGGTCAACCCTACAACG
ACTATTTATGCACAAAAGCGCGATGCAGCAAATACAGCAGCAGATTCCTC
GCGTTGGCCTGGGCACCCACGGCGTGACCGGCTCGGCCAACTTAGGTGGC
AGTATTACGCCTAGCTCGGATACCAAGCCGCACCAGTGCCAGCAATGTAT
GAAGAGCTTTTCCAGTAACCACCAGCTCGTGCAACACATCAGGGTACACA
CTGGAGAGAAGCCATACAAGTGTTCCTACTGTGATCGTAGATTTAAGCAG
TTGTCGCACGTCCAGCAGCACACGCGCCTGCACACAGGAGAACGACCCTA
TAAATGCCATCTGCCAGACTGCGGTCGAGCCTTTATACAGCTTTCAAATC
TACAACAGCATCTACGAAACCATGACGCTCAGGTGGAGCGTGCCAAAAAT
CGTCCTTTTCACTGCAACATATGTGGAAAGGGTTTCGCCACTGAATCTAG
CCTGCGTACACATACATCGAAGGAGCTACAGCTGCATCTTGGTGTCTTGC
AGCAGCATGCCGCACTAATAGGTGGTCCAAACGCTACGTCCTGTCCGGTG
TGCCATAAACTTTTCCTTGGCACTGAAGCCCTTGTGGACCACATGAAACA
TGTTCATAAGGAAAAGAGCCCCCCACCTGGTGGCTCAGCCTCATCCCAGT
TTAGCGAGCTCAATCAGATAGTTACGGGCAATGGAAACGGAACTGGATCT
AGCAATGAACAAATTGCTACCCAATGCACAACTGAATCGAACTCGCATCA
GGCCACTGTTGGCTCTAGCTTAATCGACAGCTTTTTGGGCAAGCGAAGAA
CTGCCAACCATCCTTGCCCAGTTTGCGGTAAACATTATGTCAACGAGGGT
TCCCTAAGGAAACATCTGGCTTGCCACGCTGAGAACTCCCAACTTACAAA
CAGCCTGCGAATGTGGCCATGTAGCGTTTGCCAGGCCGTCTTCACTCATG
AAAACGGCCTTCTTACCCATATGGAGTCAATGCGCATGGATCCGAAACAT
CAGTTCGCGGCTCAATACGTACTATCCCGGGCAGCTGCAGAGCAGCGAGA
ACGAGAATCTCTTCTAGCGGTTACCTTAGCCGCCAGCAGTGGCGCTAGTA
CAAGAATCGGAATTGCGGATGCCGGAAACGTTTTGCCTACGGGAGCTCAC
AACTCGGACGGATCCAACTCGAAATGCCCTTCCCCTTCGGCTAACTCGGA
ATGCTCTTCAAACGGACGCCTCTCGTCATCGACAACATCAGATCAAGACC
AAGACATCGACCATGGTTTAAGTGAAAATGAGAACAGCAACCAGAACAAC
ATAGGCAGTTCCACGAATAACAACAATAATTGCACGAGTAACAACAACGC
TAGCTCTCATAAAATGGCTGAGCTTCGACTTCCGGGAACCGGCCAATATA
CCATGGACGCGGAACTGCATGTCGCCAACCGGATGTCACTAATGGCCGCT
GCTGCTGCAGCAGTTGCTGCGTCACGACCACAAGACGGAGTGGACACTTC
AGCAGTCCCGAGCGCGGCGGTTCAGGCCGCTGTGGTTAATCTGGCAGCTG
CAATGCGAATGAACAATTCCAGCAACGGTGCTACCCCCTACCAACAACAT
CACGCCGATCACACACAGGCACACCAGACACATATCCTTCAACATGCACA
CCCACATCACCACCAACAGCAGCAGGCTCCGCAGCACCAACAGCAACAGT
TGTCCCATTTGCTAGTCCATACTCACCCCAGCAACAGCAACTCCCGTTCT
CAAAGTTCACCAAACATAAATGTGCCAAGTTTACAGAACGAATCTACTGC
CGCCTCGATCGCTATGAACATGAACGTACATATGATGCGCGGTTCCCTCG
ACCCGGACCCGAGTTTAGGAGGAATGCATGGAATAGAAGTTCTCCACCAA
CACCAGCAGCAGCACCACCACCATCATCACCACCACACGTCAAACTATCC
GCAGCACGCCGTAACTCCTACCAACCAACATACTCACCCACACCCCCAGA
CACACCAAACCGCCCATCACCATACGAGTCCTGAAACGGCGCTCCGAATG
CACCAGGCTGAAGCGATCTTACGCTCGCATACCGAAGCAGCATTCCGACT
GGCAACTGGATCTGGTCCTGACACCGGAGTAAAATGCGAGGCTGATCAAA
ACCAGCTGAATAGTAACAATGCTGGCAATGCTGGTGGCAATAGTGGAGGC
AATAGCCAACAACATCGATTCCATGCGAGTTCGAATCACCAAGAGAATCA
ACGACCATCGGACTCAGCAAGCTTTCTAGACCAT
BO23111.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:18:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lin29-RA | 3453 | CG2052-PA | 1..3450 | 17..3466 | 17250 | 100 | Plus |
Lin29-RC | 3453 | CG2052-PC | 1..3450 | 17..3466 | 17250 | 100 | Plus |
Lin29-RD | 2376 | CG2052-PD | 31..2373 | 1124..3466 | 11715 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:18:13
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lin29-RA | 3937 | CG2052-RA | 162..3611 | 17..3466 | 17250 | 100 | Plus |
Lin29-RC | 5533 | CG2052-RC | 1758..5207 | 17..3466 | 17250 | 100 | Plus |
Lin29-RD | 3163 | CG2052-RD | 495..2837 | 1124..3466 | 11715 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:18:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
4 | 1348131 | 4 | 390425..391531 | 1123..17 | 5535 | 100 | Minus |
4 | 1348131 | 4 | 375966..376631 | 3466..2801 | 3330 | 100 | Minus |
4 | 1348131 | 4 | 377094..377669 | 2800..2225 | 2880 | 100 | Minus |
4 | 1348131 | 4 | 377884..378208 | 2157..1833 | 1625 | 100 | Minus |
4 | 1348131 | 4 | 382122..382408 | 1488..1202 | 1435 | 100 | Minus |
4 | 1348131 | 4 | 378715..378902 | 1673..1486 | 940 | 100 | Minus |
4 | 1348131 | 4 | 378396..378563 | 1838..1671 | 840 | 100 | Minus |
4 | 1348131 | 4 | 386907..386989 | 1201..1119 | 415 | 100 | Minus |
4 | 1348131 | 4 | 377758..377826 | 2224..2156 | 345 | 100 | Minus |
4 | 1348131 | 4 | 376811..376864 | 2788..2735 | 240 | 96.3 | Minus |
Blast to na_te.dros performed 2014-11-26 15:18:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6828 | 2789..2898 | 199 | 64.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2603..3016 | 3080..3474 | 178 | 55.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6757..6901 | 2744..2896 | 161 | 59.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2309..2390 | 2815..2899 | 157 | 67.1 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1503..1580 | 2822..2899 | 147 | 65.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6718..6795 | 2821..2898 | 147 | 65.4 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6722..6809 | 2855..2941 | 131 | 62.5 | Plus |
Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6720..6794 | 2865..2941 | 119 | 65.4 | Plus |
BO23111.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-10-20 10:48:19 Download gff for
BO23111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG2052-RA | 142..3591 | 17..3468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:30:35 Download gff for
BO23111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lin29-RC | 1475..4924 | 17..3468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:10:35 Download gff for
BO23111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Lin29-RC | 1758..5207 | 17..3468 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:10:35 Download gff for
BO23111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
4 | 375963..376631 | 2801..3468 | 99 | <- | Minus |
4 | 377094..377669 | 2225..2800 | 100 | <- | Minus |
4 | 377758..377825 | 2157..2224 | 100 | <- | Minus |
4 | 377885..378202 | 1839..2156 | 100 | <- | Minus |
4 | 378396..378561 | 1673..1838 | 100 | <- | Minus |
4 | 378716..378900 | 1488..1672 | 100 | <- | Minus |
4 | 382123..382408 | 1202..1487 | 100 | <- | Minus |
4 | 386907..386984 | 1124..1201 | 100 | <- | Minus |
4 | 390425..391531 | 17..1123 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:30:35 Download gff for
BO23111.complete
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_4 | 396589..397257 | 2801..3468 | 99 | <- | Minus |
arm_4 | 397720..398295 | 2225..2800 | 100 | <- | Minus |
arm_4 | 398384..398451 | 2157..2224 | 100 | <- | Minus |
arm_4 | 398511..398828 | 1839..2156 | 100 | <- | Minus |
arm_4 | 399022..399187 | 1673..1838 | 100 | <- | Minus |
arm_4 | 399342..399526 | 1488..1672 | 100 | <- | Minus |
arm_4 | 402749..403034 | 1202..1487 | 100 | <- | Minus |
arm_4 | 407533..407610 | 1124..1201 | 100 | <- | Minus |
arm_4 | 411051..412157 | 17..1123 | 100 | | Minus |
BO23111.pep Sequence
Translation from 16 to 3484
> BO23111.pep
MKLRCFNQAQTSHSWHPRSVFRVVSSCPPDRKKRPSPASWQICIGHLLTN
YLGMFKMDSADFWQQARAPFGLQTALHQYSSPPNQQPISHHALHHSVPQE
NEQLAGVQPEGPAAGSGVVGNNSSMAISGTNSTVGSKAESSHIPQQHSEQ
QSYGSDSFRGTQSPQLSSHHLLFNAAAAAAAAVHLKSTAMQNNLSPIGDQ
VQNNLRNYGQGSLNALCGIKPKQEMDAKTPLQPLDECPHPLVQAQAQSQY
GGDYYDVADPQAREISEGRALIIGLGAPSTVSTDDAQSSAPSHQLAGTGR
ALQTHQCKPMSPGTVGSSNLGAGRRSAPTTISKTFSQGQQSPQHSTTPSG
GSTTPDIKYNNDKMANEIQLQLSRSSSAAAISERTLEECWSTLQRLFMHK
SAMQQIQQQIPRVGLGTHGVTGSANLGGSITPSSDTKPHQCQQCMKSFSS
NHQLVQHIRVHTGEKPYKCSYCDRRFKQLSHVQQHTRLHTGERPYKCHLP
DCGRAFIQLSNLQQHLRNHDAQVERAKNRPFHCNICGKGFATESSLRTHT
SKELQLHLGVLQQHAALIGGPNATSCPVCHKLFLGTEALVDHMKHVHKEK
SPPPGGSASSQFSELNQIVTGNGNGTGSSNEQIATQCTTESNSHQATVGS
SLIDSFLGKRRTANHPCPVCGKHYVNEGSLRKHLACHAENSQLTNSLRMW
PCSVCQAVFTHENGLLTHMESMRMDPKHQFAAQYVLSRAAAEQRERESLL
AVTLAASSGASTRIGIADAGNVLPTGAHNSDGSNSKCPSPSANSECSSNG
RLSSSTTSDQDQDIDHGLSENENSNQNNIGSSTNNNNNCTSNNNASSHKM
AELRLPGTGQYTMDAELHVANRMSLMAAAAAAVAASRPQDGVDTSAVPSA
AVQAAVVNLAAAMRMNNSSNGATPYQQHHADHTQAHQTHILQHAHPHHHQ
QQQAPQHQQQQLSHLLVHTHPSNSNSRSQSSPNINVPSLQNESTAASIAM
NMNVHMMRGSLDPDPSLGGMHGIEVLHQHQQQHHHHHHHHTSNYPQHAVT
PTNQHTHPHPQTHQTAHHHTSPETALRMHQAEAILRSHTEAAFRLATGSG
PDTGVKCEADQNQLNSNNAGNAGGNSGGNSQQHRFHASSNHQENQRPSDS
ASFLDH
BO23111.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-27 12:40:43
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Lin29-PA | 1150 | CG2052-PA | 1..1150 | 1..1150 | 6123 | 100 | Plus |
Lin29-PC | 1150 | CG2052-PC | 1..1150 | 1..1150 | 6123 | 100 | Plus |
Lin29-PB | 1140 | CG2052-PB | 1..1140 | 1..1150 | 6053 | 99.1 | Plus |
Lin29-PD | 791 | CG2052-PD | 8..791 | 367..1150 | 4177 | 99.7 | Plus |
rn-PC | 692 | CG42277-PC | 43..419 | 203..609 | 358 | 28.8 | Plus |