BO23114.complete Sequence
3688 bp assembled on 2010-08-02
GenBank Submission: KX799147
> BO23114.complete
GAAGTTATCAGTCGACATGGCCATGTCCAAGGTGATCCGTGTGCTGGAGA
AGTCCATTGCCCCCTCGCCGCACAGCGTATTACTGGAGCATCGGAACAAG
AGCGACAGCATCCTGTTCGAGTCCCATGCGGTGGCCCTGCTGACCCAGCA
GGAGACGGATGTCATCCGGAAGCAGTACACCAAGGTCTGCGACGCCTACG
GATGTCTGGGTGCCCTCCAACTAAACGCCGGCGAGAGCACCGTGCTGTTC
CTGGTGCTGGTCACCGGCTGTGTGTCCATGGGCAAGATCGGCGACATCGA
GATCTTCCGGATCACACAAACCACTTTTGTCTCGCTACAAAATGCAGCGC
CCAACGAAGACAAGATCAGCGAGGTGCGCAAGCTGCTCAACTCGGGCACC
TTCTACTTTGCCCACACCAATGCCAGTGCATCGGCATCCGGAGCGTCATC
GTATCGGTTCGATATTACGCTTTGCGCCCAGCGACGCCAGCAAACGCAGG
AGACGGACAACCGTTTCTTCTGGAATCGCATGATGCACATCCACCTGATG
CGCTTCGGTATCGATTGCCAGTCCTGGTTGTTGCAAGCCATGTGCGGCTC
CGTAGAAGTGCGCACCGTCTACATCGGTGCCAAACAGGCCCGTGCCGCCA
TCATTTCCCGACTGAGCTGCGAACGGGCTGGCACGCGTTTCAATGTCCGT
GGTACCAACGATGAGGGCTATGTGGCTAACTTTGTGGAAACCGAGCAAGT
GATCTACGTGGACGGCGATGTTACTAGTTATGTGCAGACGCGAGGATCGG
TGCCACTCTTCTGGGAACAGCCAGGCGTCCAGGTTGGCTCGCACAAGGTG
AAGCTATCACGAGGATTCGAGACATCGGCCGCCGCCTTTGATCGACACAT
GAGCATGATGAGGCAACGTTACGGCTATCAGACGGTGGTGAATCTGCTAG
GCAGCTCCCTTGTTGGCAGCAAGGAGGGCGAGGCCATGCTGAGTAATGAG
TTCCAGCGTCATCACGGCATGTCAGCCCACAAGGATGTGCCGCATGTGGT
GTTTGACTATCATCAGGAGTGTCGCGGCGGCAATTTCTCGGCGCTGGCCA
AGCTCAAGGAACGGATCGTAGCCTGCGGTGCTAACTACGGCGTCTTCCAC
GCGTCCAATGGTCAGGTGTTGCGCGAGCAGTTCGGTGTTGTGCGCACGAA
TTGCCTAGACTGTTTGGACAGGACAAACTGTGTGCAGACGTATCTCGGGC
TTGACACGCTCGGTATCCAGCTAGAGGCTTTGAAAATGGGCGGCAAGCAG
CAGAATATTTCGCGGTTTGAGGAGATCTTCCGACAGATGTGGATCAACAA
CGGAAATGAGGTCAGCAAGATCTACGCCGGCACCGGGGCCATCCAGGGGG
GATCAAAACTAATGGATGGTGCGCGATCTGCAGCAAGAACAATTCAAAAT
AACCTACTGGACAACTCAAAGCAGGAAGCCATTGATGTCCTGCTAGTGGG
CTCCACGCTTAGCTCGGAGCTTGCGGATCGGGCTCGCATCCTACTGCCCT
CCAATATGTTGCATGCACCTACCACTGTGTTGAGAGAGCTATGCAAGCGC
TACACTGAATATGTGCGTCCTCGAATGGCACGTGTAGCCGTGGGTACCTA
TAACGTCAACGGCGGCAAGCACTTCCGCAGCATTGTGTTCAAGGATTCGC
TGGCCGATTGGCTGCTCGACTGCCATGCCCTTGCCCGCTCCAAGGCGCTT
GTAGATGTGAACAATCCGTCGGAGAACGTCGATCATCCGGTGGATATCTA
CGCCATTGGATTCGAGGAGATTGTGGATCTGAATGCTTCCAACATAATGG
CGGCCAGCACCGACAATGCCAAGTTGTGGGCCGAGGAGCTGCAGAAAACG
ATCTCGCGGGACAATGACTACGTGCTGCTCACATACCAGCAACTGGTGGG
CGTGTGCCTATACATCTACATCCGACCGGAGCACGCGCCGCACATCCGGG
ACGTGGCCATCGACTGTGTTAAGACAGGATTGGGTGGTGCCACTGGGAAT
AAGGGTGCCTGTGCCATTCGATTTGTGCTTCATGGTACTTCCATGTGCTT
CGTGTGTGCCCACTTTGCAGCCGGACAGTCACAGGTGGCTGAAAGGAACG
CTGACTACGCGGAAATCACCCGGAAGCTGGCCTTCCCGATGGGCAGGACG
CTAAAATCACACGACTGGGTGTTTTGGTGCGGCGACTTCAACTATCGCAT
CGACATGGAGAAGGACGAATTAAAGGAGTGCGTACGTAATGGAGATCTCT
CAACCGTCCTCGAGTTCGATCAATTGCGCAAGGAGCAGGAGGCTGGCAAT
GTGTTTGGCGAATTCCTCGAGGGAGAGATCACTTTCGACCCGACGTACAA
GTATGATTTGTTCAGCGACGACTACGACACCTCGGAGAAACAGCGAGCGC
CCGCCTGGACAGATCGGGTTCTCTGGCGTCGCAGGAAGGCGCTGGCCGAG
GGCGACTTTGCTGCCTCAGCCTGGAATCCCGGCAAATTGATTCACTACGG
TCGTTCGGAGCTAAAGCAGAGTGATCATAGACCCGTGATCGCTATTATTG
ATGCTGAGATAATGGAGATCGATCAGCAGCGGAGACGTGCTGTATTCGAG
CAGGTTATCCGAGATCTGGGTCCGCCGGACTCCACGATTGTGGTACATGT
CCTGGAGTCTTCAGCAACTGGAGATGAGGATGGACCAACCATATACGACG
AGAATGTGATGTCAGCCCTGATTACCGAGCTATCCAAGATGGGAGAGGTC
ACTTTGGTGCGCTATGTGGAGGACACCATGTGGGTCACATTTCGGGATGG
AGAATCGGCTTTAAATGCGTCTTCTAAGAAGAGTATCCAAGTATGCGGAT
TAGATCTTATCCTGGAGCTGAAGTCAAAGGACTGGCAGCATCTGGTGGAC
AGCGAGATAGAGCTATGCACCACGAACACCATACCGCTGTGCGCTAATCC
TGTAGAGCATGCACAACTCCTGCAGGCCATTACGCCGGAGTTGCCCCAGC
GGCCCAAGCAGCCGCCCACACGTCCCCCAGCCCGTCCCCCAATGCCTATG
TCGCCAAAGAACTCACCACGCCACCTGCCCCACGTCGGGGTCATCAGCAT
TGTGCCCAAGCCGGCAAAGCCACCGATGCCACCGCAACCGCAATCTCAAC
CTCTAATTCCGTCGCCGCTTCAGCCGCAGGTGGCGCCGCCTCGTCCGCCG
GCAATGGACACCACGCCATCCTCCAAATCGCAATCGCCAACGGAACTTGT
ATCCGCTAGTTCTTCGACGTCCTCTTCGGGAAAGACTTCGCCCACAGCTC
CAGCTGTGCTCTCCGGTCCGCCGACGCCGCCGCGCCAAATGCAGAGCAAG
CAGGCCACACCCGTCTCGACGCCCACGCGCCAAGTCGGTTCGCCCAAGGA
TCCGATTCCATCTGATACCGCCTACGAAACCGCCAGTAATATTTACGAGG
AGATTCAGGAGGATGTGCCTGCGCCACGCCATCCGCCGCCGGCTGGACCG
CCGCCAGTGATAGGAGCACCAATGGGCCCGCCGCCACCGCTGCCGAATCG
CAGGGGCCCACCACCCATACCAAATAGGAGCGGCAATGCTCCACCGCTGC
CCACGCGACCCGCCAACAACGCAAGCTTTCTAGACCAT
BO23114.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:40:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Synj-RC | 3657 | CG6562-PC | 1..3654 | 17..3670 | 18270 | 100 | Plus |
| Synj-RA | 3657 | CG6562-PA | 1..3654 | 17..3670 | 18270 | 100 | Plus |
| Synj-RB | 3657 | CG6562-PB | 1..3654 | 17..3670 | 18270 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:40:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Synj-RC | 4638 | CG6562-RC | 185..3838 | 17..3670 | 18270 | 100 | Plus |
| Synj-RA | 4655 | CG6562-RA | 202..3855 | 17..3670 | 18270 | 100 | Plus |
| Synj-RB | 4243 | CG6562-RB | 136..3789 | 17..3670 | 18270 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22082703..22084900 | 1473..3670 | 10990 | 100 | Plus |
| 2R | 25286936 | 2R | 22081180..22082638 | 17..1475 | 7295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 08:40:34 has no hits.
BO23114.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-08-02 10:19:36 Download gff for
BO23114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| synj-RA | 202..3855 | 17..3672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:25:40 Download gff for
BO23114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| synj-RB | 136..3789 | 17..3672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:22:47 Download gff for
BO23114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Synj-RB | 136..3789 | 17..3672 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:22:47 Download gff for
BO23114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22081180..22082637 | 17..1474 | 100 | -> | Plus |
| 2R | 22082705..22084900 | 1475..3672 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:25:40 Download gff for
BO23114.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17968685..17970142 | 17..1474 | 100 | -> | Plus |
| arm_2R | 17970210..17972405 | 1475..3672 | 99 | | Plus |
BO23114.pep Sequence
Translation from 16 to 3688
> BO23114.pep
MAMSKVIRVLEKSIAPSPHSVLLEHRNKSDSILFESHAVALLTQQETDVI
RKQYTKVCDAYGCLGALQLNAGESTVLFLVLVTGCVSMGKIGDIEIFRIT
QTTFVSLQNAAPNEDKISEVRKLLNSGTFYFAHTNASASASGASSYRFDI
TLCAQRRQQTQETDNRFFWNRMMHIHLMRFGIDCQSWLLQAMCGSVEVRT
VYIGAKQARAAIISRLSCERAGTRFNVRGTNDEGYVANFVETEQVIYVDG
DVTSYVQTRGSVPLFWEQPGVQVGSHKVKLSRGFETSAAAFDRHMSMMRQ
RYGYQTVVNLLGSSLVGSKEGEAMLSNEFQRHHGMSAHKDVPHVVFDYHQ
ECRGGNFSALAKLKERIVACGANYGVFHASNGQVLREQFGVVRTNCLDCL
DRTNCVQTYLGLDTLGIQLEALKMGGKQQNISRFEEIFRQMWINNGNEVS
KIYAGTGAIQGGSKLMDGARSAARTIQNNLLDNSKQEAIDVLLVGSTLSS
ELADRARILLPSNMLHAPTTVLRELCKRYTEYVRPRMARVAVGTYNVNGG
KHFRSIVFKDSLADWLLDCHALARSKALVDVNNPSENVDHPVDIYAIGFE
EIVDLNASNIMAASTDNAKLWAEELQKTISRDNDYVLLTYQQLVGVCLYI
YIRPEHAPHIRDVAIDCVKTGLGGATGNKGACAIRFVLHGTSMCFVCAHF
AAGQSQVAERNADYAEITRKLAFPMGRTLKSHDWVFWCGDFNYRIDMEKD
ELKECVRNGDLSTVLEFDQLRKEQEAGNVFGEFLEGEITFDPTYKYDLFS
DDYDTSEKQRAPAWTDRVLWRRRKALAEGDFAASAWNPGKLIHYGRSELK
QSDHRPVIAIIDAEIMEIDQQRRRAVFEQVIRDLGPPDSTIVVHVLESSA
TGDEDGPTIYDENVMSALITELSKMGEVTLVRYVEDTMWVTFRDGESALN
ASSKKSIQVCGLDLILELKSKDWQHLVDSEIELCTTNTIPLCANPVEHAQ
LLQAITPELPQRPKQPPTRPPARPPMPMSPKNSPRHLPHVGVISIVPKPA
KPPMPPQPQSQPLIPSPLQPQVAPPRPPAMDTTPSSKSQSPTELVSASSS
TSSSGKTSPTAPAVLSGPPTPPRQMQSKQATPVSTPTRQVGSPKDPIPSD
TAYETASNIYEEIQEDVPAPRHPPPAGPPPVIGAPMGPPPPLPNRRGPPP
IPNRSGNAPPLPTRPANNASFLDH
BO23114.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:44:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Synj-PC | 1218 | CG6562-PC | 1..1218 | 1..1218 | 6383 | 100 | Plus |
| Synj-PA | 1218 | CG6562-PA | 1..1218 | 1..1218 | 6383 | 100 | Plus |
| Synj-PB | 1218 | CG6562-PB | 1..1218 | 1..1218 | 6383 | 100 | Plus |
| Ocrl-PB | 850 | CG3573-PB | 168..497 | 521..882 | 487 | 33.4 | Plus |
| Ocrl-PA | 850 | CG3573-PA | 168..497 | 521..882 | 487 | 33.4 | Plus |
