BO23305.complete Sequence
580 bp assembled on 2010-03-31
GenBank Submission: KX795887
> BO23305.complete
GAAGTTATCAGTCGACATGTGGTACAGCAAGTGCAGTTGGACTTTGGTAG
TGTTGGTGGCTCTCTTTGCTCTCGTGACAGGTTCCTGCCTGGAATACGGA
CATTCGTGTTGGGGAGCTCATGGCAAGCGGTCCGGCGGGAAGGCGGTCAT
AGATGCTAAACAGCATCCCTTGCCAAATTCATATGGCTTGGATAGCGTGG
TGGAGCAACTGTACAACAACAACAACAACAACCAGAACAACCAGGACGAC
GACAACAACGATGACGACAGCAACAGAAATACGAATGCGAATAGTGCCAA
CAACATACCCCTGGCTGCTCCAGCCATTATAAGTCGTCGAGAATCGGAGG
ATCGGCGAATCGGTGGCCTAAAGTGGGCGCAGCTGATGCGGCAGCACCGC
TATCAATTGCGCCAGTTGCAGGATCAGCAGCAGCAGGGGCGTGGCAGGGG
CGGTCAGGGTCAGTACGATGCGGCAGCCGAGAGTTGGAGGAAACTGCAGC
AGGCTCTGCAGGCCCAAATCGATGCCGACAATGAGAACTACTCGGGCTAC
GAGCTAACGAAGGCAAGCTTTCTAGACCAT
BO23305.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:44:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa1-RB | 549 | CG14358-PB | 1..546 | 17..562 | 2730 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:44:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa1-RB | 857 | CG14358-RB | 177..722 | 17..562 | 2730 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:44:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14092639..14093042 | 562..159 | 2020 | 100 | Minus |
| 3R | 32079331 | 3R | 14096594..14096659 | 82..17 | 330 | 100 | Minus |
| 3R | 32079331 | 3R | 14093137..14093185 | 163..115 | 245 | 100 | Minus |
| 3R | 32079331 | 3R | 14093273..14093311 | 116..78 | 195 | 100 | Minus |
Blast to na_te.dros performed 2014-11-26 15:44:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2418..2642 | 214..436 | 149 | 56.5 | Plus |
BO23305.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:38 Download gff for
BO23305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14358-RB | 177..722 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:13 Download gff for
BO23305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa1-RB | 177..722 | 17..564 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:20 Download gff for
BO23305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CCHa1-RB | 177..722 | 17..564 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:20 Download gff for
BO23305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14092636..14093037 | 164..564 | 99 | <- | Minus |
| 3R | 14093137..14093183 | 117..163 | 100 | <- | Minus |
| 3R | 14093273..14093308 | 81..116 | 100 | <- | Minus |
| 3R | 14096596..14096659 | 17..80 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:13 Download gff for
BO23305.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9918358..9918759 | 164..564 | 99 | <- | Minus |
| arm_3R | 9918859..9918905 | 117..163 | 100 | <- | Minus |
| arm_3R | 9918995..9919030 | 81..116 | 100 | <- | Minus |
| arm_3R | 9922318..9922381 | 17..80 | 100 | | Minus |
BO23305.pep Sequence
Translation from 16 to 580
> BO23305.pep
MWYSKCSWTLVVLVALFALVTGSCLEYGHSCWGAHGKRSGGKAVIDAKQH
PLPNSYGLDSVVEQLYNNNNNNQNNQDDDNNDDDSNRNTNANSANNIPLA
APAIISRRESEDRRIGGLKWAQLMRQHRYQLRQLQDQQQQGRGRGGQGQY
DAAAESWRKLQQALQAQIDADNENYSGYELTKASFLDH
BO23305.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CCHa1-PB | 182 | CG14358-PB | 1..182 | 1..182 | 977 | 100 | Plus |
