BO23307.complete Sequence
394 bp assembled on 2010-03-31
GenBank Submission: KX799929
> BO23307.complete
GAAGTTATCAGTCGACATGGCCCTGATCAAGATCACCCTCATCTGCTGCG
CTCTGATCGCCGCCATCGAGTGCGCCCTGCTCCCAGCTGCTGTTCCAGTG
GGAGTGCCCCTCAACACGGAGGTGGATCCACATCCGCAGTACGCGTTCGC
CTATAATGTGCAGGATGCCCTTACCGGGGACAGCAAGAGCCAGCAGGAGG
TGCGGGATGGAGATGTGGTCAAGGGCTCCTACTCGGTGGTCGATGCCGAT
GGTTCACTGCGCACCGTCTTCTACACCGCCGATCCCATCAACGGTTTCAA
TGCGGTGGTGCAGCGAGGACCAGTTCCGGTGGCTGCTCGCCCATTGGTGG
CTCCAGTGGCTGCTCCAATCTTGGGCGCAAGCTTTCTAGACCAT
BO23307.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:45:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr64Ab-RA | 363 | CG15007-PA | 1..360 | 17..376 | 1800 | 100 | Plus |
| Cpr64Ad-RB | 744 | CG1259-PB | 418..609 | 122..313 | 270 | 76 | Plus |
| Ccp84Ad-RA | 600 | CG2341-PA | 169..344 | 125..300 | 235 | 75.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:45:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr64Ab-RA | 552 | CG15007-RA | 68..428 | 16..376 | 1805 | 100 | Plus |
| Cpr64Ad-RB | 961 | CG1259-RB | 489..680 | 122..313 | 270 | 76 | Plus |
| Ccp84Ad-RA | 735 | CG2341-RA | 235..410 | 125..300 | 235 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:45:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4211004..4211350 | 376..30 | 1735 | 100 | Minus |
| 3L | 28110227 | 3L | 4215942..4216133 | 122..313 | 270 | 76 | Plus |
| 3R | 32079331 | 3R | 6693027..6693202 | 125..300 | 235 | 75.6 | Plus |
| 2L | 23513712 | 2L | 9932724..9932862 | 311..173 | 230 | 77.7 | Minus |
| 3L | 28110227 | 3L | 1841032..1841124 | 283..191 | 210 | 81.7 | Minus |
| 3R | 32079331 | 3R | 6689785..6689960 | 300..125 | 205 | 74.4 | Minus |
| 2L | 23513712 | 2L | 10055335..10055437 | 223..325 | 185 | 78.6 | Plus |
Blast to na_te.dros performed on 2014-11-26 15:45:32 has no hits.
BO23307.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:40 Download gff for
BO23307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr64Ab-RA | 70..429 | 17..378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:23 Download gff for
BO23307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr64Ab-RA | 69..428 | 17..378 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:19:39 Download gff for
BO23307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr64Ab-RA | 69..428 | 17..378 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:19:39 Download gff for
BO23307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4211002..4211348 | 32..378 | 99 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:23 Download gff for
BO23307.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4211002..4211348 | 32..378 | 99 | <- | Minus |
BO23307.pep Sequence
Translation from 16 to 394
> BO23307.pep
MALIKITLICCALIAAIECALLPAAVPVGVPLNTEVDPHPQYAFAYNVQD
ALTGDSKSQQEVRDGDVVKGSYSVVDADGSLRTVFYTADPINGFNAVVQR
GPVPVAARPLVAPVAAPILGASFLDH
BO23307.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr64Ab-PA | 120 | CG15007-PA | 1..120 | 1..120 | 611 | 100 | Plus |
| Ccp84Ad-PA | 199 | CG2341-PA | 45..140 | 25..118 | 302 | 64.6 | Plus |
| Cpr64Ad-PB | 247 | CG1259-PB | 126..223 | 23..121 | 302 | 65 | Plus |
| Ccp84Ag-PA | 191 | CG2342-PA | 4..118 | 5..117 | 297 | 55.2 | Plus |
| Cpr5C-PA | 145 | CG4052-PA | 43..142 | 21..121 | 295 | 61.4 | Plus |
