Clone BO23313 Report

Search the DGRC for BO23313

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:233
Well:13
Vector:pDNR-Dual
Associated Gene/TranscriptCG15172-RA
Protein status:BO23313.pep: Imported from assembly
Sequenced Size:379

Clone Sequence Records

BO23313.complete Sequence

379 bp assembled on 2010-03-31

GenBank Submission: KX793918

> BO23313.complete
GAAGTTATCAGTCGACATGTGTTTTAATGTACTGGGAGTGAGCAATCTGC
TACCCGATTGCAGCATTGCAAACCGGGTCCATCTGTTCTCTTTGCTGCAG
CAACTCCAGAACCAGGAGCGTCGTCCGGAGGAAGTGAGTGACGAGTTGCG
GGATCGCTACAACGTATTTCGCCAGGTTTTGCCCAACTACCCGCCACCGG
AACAGCCAGACGACGATATGCTAGCAAACTTTGATGAGTTATTCCAGGAG
CAGCTTTCAATATCGATCTTCACAGACACTGAATCATCCGGCGAGGAGAC
CTGCGAATCCAGTCTGGATAGTGACTCCGAGCAGATCAGCATCGGGATGG
ATCGTCATCATGCAAGCTTTCTAGACCAT

BO23313.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:47:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG15172-RD 348 CG15172-PD 1..345 17..361 1725 100 Plus
CG15172-RC 348 CG15172-PC 1..345 17..361 1725 100 Plus
CG15172-RB 348 CG15172-PB 1..345 17..361 1725 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:47:24
Subject Length Description Subject Range Query Range Score Percent Strand
CG15172-RD 629 CG15172-RD 161..506 16..361 1730 100 Plus
CG15172-RC 574 CG15172-RC 108..453 16..361 1730 100 Plus
CG15172-RB 631 CG15172-RB 165..510 16..361 1730 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:47:20
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 19023178..19023523 16..361 1730 100 Plus
2L 23513712 2L 19075260..19075375 193..78 460 93.1 Minus
2L 23513712 2L 19075157..19075250 319..226 365 92.6 Minus
Blast to na_te.dros performed on 2014-11-26 15:47:21 has no hits.

BO23313.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:43 Download gff for BO23313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15172-RA 16..360 17..363 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:57:45 Download gff for BO23313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15172-RB 166..510 17..363 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:18 Download gff for BO23313.complete
Subject Subject Range Query Range Percent Splice Strand
CG15172-RB 166..510 17..363 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:18 Download gff for BO23313.complete
Subject Subject Range Query Range Percent Splice Strand
2L 19023179..19023523 17..363 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:57:45 Download gff for BO23313.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 19023179..19023523 17..363 99   Plus

BO23313.pep Sequence

Translation from 16 to 379

> BO23313.pep
MCFNVLGVSNLLPDCSIANRVHLFSLLQQLQNQERRPEEVSDELRDRYNV
FRQVLPNYPPPEQPDDDMLANFDELFQEQLSISIFTDTESSGEETCESSL
DSDSEQISIGMDRHHASFLDH

BO23313.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG15172-PD 115 CG15172-PD 1..115 1..115 602 100 Plus
CG15172-PC 115 CG15172-PC 1..115 1..115 602 100 Plus
CG15172-PB 115 CG15172-PB 1..115 1..115 602 100 Plus
CG15172-PA 115 CG15172-PA 1..115 1..115 602 100 Plus