BO23316.complete Sequence
526 bp assembled on 2010-03-31
GenBank Submission: KX797578
> BO23316.complete
GAAGTTATCAGTCGACATGAAGGTTCTGTTCGTGTGCATTGGCAACACAT
GCCGGTCACCAATGGCCGAGGCCATACTGAAGCATTTGGTAGTGAAACGG
AATCTGCAGGACTGGTATGTGGACAGTGCTGGCCTCAGGAGTTGGAACGT
TGGCCTGGAGCCCCAGGCACGTGGACAACAATTGTTAAAACAGCATGGTT
TGAAAACAAACCACTTGGGTCGTATGATAAGCGCTCAAGACTTCTATGAC
TTCGATTACATATTCGCCATGGACAATAGCAACCTATTGGAGCTTGAGCA
TATGGCTGCTTCTCTTACTCCCAGTCCGACATGCAAGATTCAATTGCTGG
GTAGCTATATTGGACGCAAGGAGGATGAGATCATCGAGGATCCATACTTT
ATTCAAGGCATGGGAGGCTTTAATGCTGCATATCTGCAGATTCTGGAAAG
CTGCGAACGATTTCTGCAACATTATAAATCGGATGACAAGGAGTTATCAT
TAGGAAGTGCAAGCTTTCTAGACCAT
BO23316.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-26 15:48:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31469-RA | 495 | CG31469-PA | 1..492 | 17..508 | 2460 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-26 15:48:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31469-RA | 613 | CG31469-RA | 6..497 | 17..508 | 2460 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-26 15:48:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 13709668..13709857 | 230..41 | 935 | 99.5 | Minus |
| 3R | 32079331 | 3R | 13709441..13709615 | 400..226 | 875 | 100 | Minus |
| 3R | 32079331 | 3R | 13709275..13709382 | 508..401 | 540 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-26 15:48:25 has no hits.
BO23316.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:46 Download gff for
BO23316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31469-RA | 37..528 | 17..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-03 23:58:00 Download gff for
BO23316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31469-RA | 6..497 | 17..510 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-26 16:20:41 Download gff for
BO23316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31469-RA | 6..497 | 17..510 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-26 16:20:41 Download gff for
BO23316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 13709273..13709382 | 401..510 | 98 | <- | Minus |
| 3R | 13709441..13709614 | 227..400 | 100 | <- | Minus |
| 3R | 13709672..13709856 | 42..226 | 100 | <- | Minus |
| 3R | 13709910..13709934 | 17..41 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-03 23:58:00 Download gff for
BO23316.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 9534995..9535104 | 401..510 | 98 | <- | Minus |
| arm_3R | 9535163..9535336 | 227..400 | 100 | <- | Minus |
| arm_3R | 9535394..9535578 | 42..226 | 100 | <- | Minus |
| arm_3R | 9535632..9535656 | 17..41 | 100 | | Minus |
BO23316.pep Sequence
Translation from 16 to 526
> BO23316.pep
MKVLFVCIGNTCRSPMAEAILKHLVVKRNLQDWYVDSAGLRSWNVGLEPQ
ARGQQLLKQHGLKTNHLGRMISAQDFYDFDYIFAMDNSNLLELEHMAASL
TPSPTCKIQLLGSYIGRKEDEIIEDPYFIQGMGGFNAAYLQILESCERFL
QHYKSDDKELSLGSASFLDH
BO23316.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31469-PA | 164 | CG31469-PA | 1..164 | 1..164 | 864 | 100 | Plus |
| primo-2-PC | 164 | CG33747-PC | 10..156 | 3..151 | 324 | 42.7 | Plus |
| primo-1-PB | 155 | CG33748-PB | 4..150 | 2..151 | 318 | 41.3 | Plus |
| primo-1-PA | 155 | CG33748-PA | 4..150 | 2..151 | 318 | 41.3 | Plus |
| CG14297-PA | 250 | CG14297-PA | 5..166 | 2..164 | 305 | 40.5 | Plus |
