Clone BO23317 Report

Search the DGRC for BO23317

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:233
Well:17
Vector:pDNR-Dual
Associated Gene/TranscriptApf-RA
Protein status:BO23317.pep: Imported from assembly
Sequenced Size:460

Clone Sequence Records

BO23317.complete Sequence

460 bp assembled on 2010-03-31

GenBank Submission: KX799053

> BO23317.complete
GAAGTTATCAGTCGACATGGAAAAGGCAGCTGGTTTTGTTATTTTTCGCC
GCCTTTGTGGGGAAATACAATACCTATTGCTGAAGGCTTCCTACGGCTCC
TTCCACTGGAGTTCTCCCAAGGGACATGTGGACCCAGGCGAGGATGATTT
TACCACTGCCCTGCGAGAAACGAAAGAGGAAGCCGGGTACGACGAGAAGG
ATCTGATCATATACAAGGACACTCCGCTGACCCTGAATTATCAGGTGCAA
GACAAGCCGAAGATTGTTATTTACTGGCTAGCGGAGCTGCGGAATCCCTG
CCAGGAGCCCATTCTCTCCGAGGAGCACACCGACCTCAAGTGGCTGCCCA
AGGAGGAGGCCAAGCAGTGCGTCGGCTTTAAGGATAACCAAGTCATGATC
GACAAGTTCCACCAAATGATTTTAGATCAAAACAAACCAATGGCAAGCTT
TCTAGACCAT

BO23317.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 07:35:38
Subject Length Description Subject Range Query Range Score Percent Strand
Apf-RA 429 CG31713-PA 1..426 17..442 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 07:35:40
Subject Length Description Subject Range Query Range Score Percent Strand
Apf-RA 555 CG31713-RA 51..478 15..442 2140 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 07:35:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9938255..9938511 442..186 1285 100 Minus
2L 23513712 2L 9938568..9938740 187..15 865 100 Minus
Blast to na_te.dros performed on 2014-11-27 07:35:37 has no hits.

BO23317.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:29 Download gff for BO23317.complete
Subject Subject Range Query Range Percent Splice Strand
Apf-RA 50..475 17..444 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 05:18:35 Download gff for BO23317.complete
Subject Subject Range Query Range Percent Splice Strand
Apf-RA 53..478 17..444 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 08:13:34 Download gff for BO23317.complete
Subject Subject Range Query Range Percent Splice Strand
Apf-RA 53..478 17..444 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 08:13:34 Download gff for BO23317.complete
Subject Subject Range Query Range Percent Splice Strand
2L 9938252..9938510 187..444 99 <- Minus
2L 9938565..9938738 17..186 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 05:18:35 Download gff for BO23317.complete
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9938252..9938510 187..444 99 <- Minus
arm_2L 9938565..9938738 17..186 97   Minus

BO23317.pep Sequence

Translation from 16 to 460

> BO23317.pep
MEKAAGFVIFRRLCGEIQYLLLKASYGSFHWSSPKGHVDPGEDDFTTALR
ETKEEAGYDEKDLIIYKDTPLTLNYQVQDKPKIVIYWLAELRNPCQEPIL
SEEHTDLKWLPKEEAKQCVGFKDNQVMIDKFHQMILDQNKPMASFLDH

BO23317.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:43:55
Subject Length Description Subject Range Query Range Score Percent Strand
Apf-PA 142 CG31713-PA 1..142 1..142 767 100 Plus