BO23335.complete Sequence
523 bp assembled on 2010-03-31
GenBank Submission: KX797694
> BO23335.complete
GAAGTTATCAGTCGACATGCTACGATTGCTAGTTTGTTTGTGGCTACTGG
TGTACAGTGGTTCCAGCTATGAGGTGCAAAACAAACCCGTCACGGAAGAT
TGCCTAGACTGTCTATGCGAAACAATGAGTGGCTGCAATGCATCCGCAAT
TTGCGTAAATGGGGCCTGCGGTATATTCCGAATCACTTGGGGCTACTGGG
TGGAGGCGGGCAAACTAACTTTGCCCACAGATACAGCTCTCTCCGAAGAC
GCTTTTACGAACTGCGTTAATCAGCCCCACTGTGCAGCGAACACGGTGCA
GAATTATATGTTCAAACATGGCCAGGATTGCAATGGAGACGAGCACATCG
ATTGCCTGGATTTCGGAGCACTCCACAAACTGGGCAATCTGAAGTGCCAG
GAAGAGTTGCCCTACATCTTTGCCAAAGTCTTCAATCGATGTCTGAAATC
CAAGGAGCGGATGGCAGAGGAAAAGATCATCAAGGAGCAGGAAACGGTTT
CAACAGCAAGCTTTCTAGACCAT
BO23335.complete Blast Records
Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:00:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6435-RA | 492 | CG6435-PA | 1..489 | 17..505 | 2445 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:00:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6435-RA | 794 | CG6435-RA | 57..545 | 17..505 | 2445 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:00:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16874474..16874728 | 251..505 | 1275 | 100 | Plus |
| 2R | 25286936 | 2R | 16874240..16874417 | 74..251 | 890 | 100 | Plus |
| 2R | 25286936 | 2R | 16873828..16873885 | 17..74 | 290 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-27 14:00:55 has no hits.
BO23335.complete Sim4 Records
Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:44 Download gff for
BO23335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6435-RA | 50..538 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:09 Download gff for
BO23335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6435-RA | 57..545 | 17..507 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:01 Download gff for
BO23335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6435-RA | 57..545 | 17..507 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:01 Download gff for
BO23335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16873828..16873885 | 17..74 | 100 | -> | Plus |
| 2R | 16874241..16874417 | 75..251 | 100 | -> | Plus |
| 2R | 16874475..16874728 | 252..507 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:09 Download gff for
BO23335.complete
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12761333..12761390 | 17..74 | 100 | -> | Plus |
| arm_2R | 12761746..12761922 | 75..251 | 100 | -> | Plus |
| arm_2R | 12761980..12762233 | 252..507 | 99 | | Plus |
BO23335.pep Sequence
Translation from 16 to 523
> BO23335.pep
MLRLLVCLWLLVYSGSSYEVQNKPVTEDCLDCLCETMSGCNASAICVNGA
CGIFRITWGYWVEAGKLTLPTDTALSEDAFTNCVNQPHCAANTVQNYMFK
HGQDCNGDEHIDCLDFGALHKLGNLKCQEELPYIFAKVFNRCLKSKERMA
EEKIIKEQETVSTASFLDH
BO23335.pep Blast Records
Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6435-PA | 163 | CG6435-PA | 1..163 | 1..163 | 896 | 100 | Plus |
| CG6429-PA | 159 | CG6429-PA | 23..151 | 19..148 | 465 | 56.9 | Plus |
| CG6426-PA | 161 | CG6426-PA | 25..155 | 19..149 | 438 | 55.7 | Plus |
| CG6421-PA | 161 | CG6421-PA | 5..156 | 4..147 | 424 | 53.3 | Plus |
| CG14823-PA | 263 | CG14823-PA | 138..258 | 29..144 | 170 | 37.1 | Plus |
