Clone BO23340 Report

Search the DGRC for BO23340

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:233
Well:40
Vector:pDNR-Dual
Associated Gene/TranscriptCG10581-RA
Protein status:BO23340.pep: Imported from assembly
Sequenced Size:601

Clone Sequence Records

BO23340.complete Sequence

601 bp assembled on 2010-03-31

GenBank Submission: KX795458

> BO23340.complete
GAAGTTATCAGTCGACATGAAGAACCAAAAAAATATAACCATTATACTAA
CTGGGCCACCAGGAGTGGGTAAAACTACACTGGTCCACAAAATATGCTCG
GCTCTGCAGGATAGAGGACGCATTCTTCAAGGATTCTACACAGAGGAAAT
GCGAGGTGAGGGCACCAGCCAAAGAATCGGCTTCGACGTGGTCACGTTAG
CCGGAAAACGAGCAATCCTATCTCGCAAGAATCCCGGGGACCAGCTGCGA
CGACCCAAAGTGGGAGAGTATTCGGTGTTTGTGCAGGACTTCGACAGTCT
CGCTCTGCCAGTACTTGGCACACAGGATTCCCAACCAGAGCCGGATCTCC
TGGTCGTGGATGAAGTGGGCAAAATGGAGCTGCTTAGCAAGCGATTTGAG
TCGGCCATGGCTGATCTCCTGAAGAAAAAGCGGGCCCTATTGGTCACCAT
ACCCGAGAAATCAACATTGGCTTTGGTGGAGCAGCTGAGAAAGTCAGCAG
GATCCAAGATTTACCAGGTGACCAAATTCAATAGGAACGCCTTGGCTGGA
GAGATTACAGAAGAGATTACAAAAGCACTTCTTGCAAGCTTTCTAGACCA
T

BO23340.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-27 14:01:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG10581-RA 570 CG10581-PA 1..567 17..583 2835 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:01:58
Subject Length Description Subject Range Query Range Score Percent Strand
CG10581-RA 587 CG10581-RA 8..578 13..583 2855 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-27 14:01:55
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 21033563..21034086 583..60 2620 100 Minus
3L 28110227 3L 21034146..21034196 63..13 255 100 Minus
Blast to na_te.dros performed 2014-11-27 14:01:56
Subject Length Description Subject Range Query Range Score Percent Strand
accord 7404 accord ACCORD 7404bp 2727..2764 554..591 109 76.3 Plus

BO23340.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:27:48 Download gff for BO23340.complete
Subject Subject Range Query Range Percent Splice Strand
CG10581-RA 12..578 17..585 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 08:38:35 Download gff for BO23340.complete
Subject Subject Range Query Range Percent Splice Strand
CG10581-RA 12..578 17..585 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-27 14:32:22 Download gff for BO23340.complete
Subject Subject Range Query Range Percent Splice Strand
CG10581-RA 12..578 17..585 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-27 14:32:22 Download gff for BO23340.complete
Subject Subject Range Query Range Percent Splice Strand
3L 21033561..21034083 63..585 99 <- Minus
3L 21034147..21034192 17..62 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 08:38:35 Download gff for BO23340.complete
Subject Subject Range Query Range Percent Splice Strand
arm_3L 21026661..21027183 63..585 99 <- Minus
arm_3L 21027247..21027292 17..62 100   Minus

BO23340.pep Sequence

Translation from 16 to 601

> BO23340.pep
MKNQKNITIILTGPPGVGKTTLVHKICSALQDRGRILQGFYTEEMRGEGT
SQRIGFDVVTLAGKRAILSRKNPGDQLRRPKVGEYSVFVQDFDSLALPVL
GTQDSQPEPDLLVVDEVGKMELLSKRFESAMADLLKKKRALLVTIPEKST
LALVEQLRKSAGSKIYQVTKFNRNALAGEITEEITKALLASFLDH

BO23340.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:56:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG10581-PA 189 CG10581-PA 1..189 1..189 937 100 Plus