Clone BO23352 Report

Search the DGRC for BO23352

Clone and Library Details

Library:BO
Tissue Source:D. melanogaster
Created by:Joe Carlson
Date Registered:2004-06-03
Comments:Infusion clones with open reading frames
Original Plate Number:233
Well:52
Vector:pDNR-Dual
Associated Gene/TranscriptCG15200-RA
Protein status:BO23352.pep: Imported from assembly
Sequenced Size:373

Clone Sequence Records

BO23352.complete Sequence

373 bp assembled on 2010-03-31

GenBank Submission: KX800119

> BO23352.complete
GAAGTTATCAGTCGACATGTCGAACGGTTTTTCCTTCTGGAACGGACAGC
CAGTGAATGCGCCTATCTTTCCCCAAATGGGTGATGCCATAAACGTTGGT
AGCCAGTGGTCGTCCAGCGTGGCACCAGGATCCTGTGGACCAAGAACTCG
ACCGATGCTGCAGAGCATGGGCGATTTCCAGCCGATGAGATGTCCTCCAG
TGCCACCCAACTTCTTTGGCCAGCCGCACGCCATGGGAACTGGATTTGGA
GATGATCAGGGACCCTGCGAACCCTGCATCGATAATGGAGAAGCCTTCTG
CGCCTACAACGGCTTGGATATGAGCTGTGCCGGGAGAATTAAGGGCGATT
TCTGGGCAAGCTTTCTAGACCAT

BO23352.complete Blast Records

Blast to dmel-all-CDS-r6.02.fasta performed 2014-11-28 08:42:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG15200-RA 342 CG15200-PA 1..339 17..355 1695 100 Plus
CG1394-RB 504 CG1394-PB 403..459 269..325 210 91.2 Plus
CG1394-RA 504 CG1394-PA 403..459 269..325 210 91.2 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 08:42:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15200-RA 546 CG15200-RA 125..464 16..355 1700 100 Plus
CG1394-RB 868 CG1394-RB 572..628 269..325 210 91.2 Plus
CG1394-RA 842 CG1394-RA 572..628 269..325 210 91.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 08:42:16
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 11183055..11183394 16..355 1700 100 Plus
X 23542271 X 11170051..11170107 325..269 210 91.2 Minus
Blast to na_te.dros performed on 2014-11-28 08:42:17 has no hits.

BO23352.complete Sim4 Records

Sim4 to dmel-all-transcript-r5.12.fasta performed 2010-04-19 16:28:54 Download gff for BO23352.complete
Subject Subject Range Query Range Percent Splice Strand
CG15200-RA 126..464 17..357 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:26:22 Download gff for BO23352.complete
Subject Subject Range Query Range Percent Splice Strand
CG15200-RA 126..464 17..357 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 09:23:19 Download gff for BO23352.complete
Subject Subject Range Query Range Percent Splice Strand
CG15200-RA 126..464 17..357 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 09:23:19 Download gff for BO23352.complete
Subject Subject Range Query Range Percent Splice Strand
X 11183056..11183394 17..357 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:26:22 Download gff for BO23352.complete
Subject Subject Range Query Range Percent Splice Strand
arm_X 11077089..11077427 17..357 99   Plus

BO23352.pep Sequence

Translation from 16 to 373

> BO23352.pep
MSNGFSFWNGQPVNAPIFPQMGDAINVGSQWSSSVAPGSCGPRTRPMLQS
MGDFQPMRCPPVPPNFFGQPHAMGTGFGDDQGPCEPCIDNGEAFCAYNGL
DMSCAGRIKGDFWASFLDH

BO23352.pep Blast Records

Blast to dmel-all-translation-r6.02.fasta performed 2014-11-29 05:57:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG15200-PA 113 CG15200-PA 1..113 1..113 653 100 Plus
CG11106-PB 112 CG11106-PB 4..112 3..113 139 31.5 Plus
CG11106-PA 112 CG11106-PA 4..112 3..113 139 31.5 Plus